Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,384,034	+		DZA65_RS20230	0.66	+1.6
4,384,034	+		DZA65_RS20230	0.66	+1.3
4,384,035	-		DZA65_RS20230	0.66	+1.9
4,384,035	-		DZA65_RS20230	0.66	-0.3
4,384,035	-		DZA65_RS20230	0.66	+1.3
4,384,110	+		DZA65_RS20230	0.71	+0.9
4,384,110	+		DZA65_RS20230	0.71	-0.8
4,384,111	-		DZA65_RS20230	0.71	+1.2
4,384,335	+		DZA65_RS20230	0.84	+0.6
4,384,335	+		DZA65_RS20230	0.84	-1.2
4,384,335	+		DZA65_RS20230	0.84	-1.4
4,384,336	-		DZA65_RS20230	0.85	-2.4
4,384,336	-		DZA65_RS20230	0.85	-0.4
4,384,461	+				+1.1
4,384,461	+				+0.9
4,384,516	-				+0.9
4,384,533	+				-0.1
4,384,533	+				+0.5
4,384,533	+				-1.0
4,384,533	+				-0.1
4,384,533	+				+1.1
4,384,533	+				-0.1
4,384,533	+				-0.4
4,384,533	+				-0.7
4,384,533	+				+1.0
4,384,534	-				-1.3
4,384,534	-				-0.8
4,384,534	-				-0.6
4,384,534	-				-1.6
4,384,534	-				+1.2
4,384,534	-				-0.6
4,384,534	-				-0.3
4,384,540	-				+0.3
4,384,567	+				-0.2
4,384,568	-				-0.7
4,384,570	+				-2.0
4,384,570	+				+0.3
4,384,570	+				-0.1
4,384,571	-				+0.2
4,384,571	-				-0.7
4,384,571	-				-0.3
4,384,571	-				-0.4
4,384,571	-				-1.1
4,384,571	-				-0.9
4,384,571	-				-0.5
4,384,571	-				-0.3
4,384,611	-				+2.8
4,384,611	-				-2.4
4,384,665	+				+3.0
4,384,665	+				+0.1
4,384,665	+				-0.1
4,384,666	-				+0.0
4,384,695	+				-1.1
4,384,696	-				-0.7
4,384,696	-				-0.1
4,384,696	-				+0.2
4,384,696	-				+0.8
4,384,716	+				-0.0
4,384,716	+				+1.2
4,384,716	+				+0.3
4,384,716	+				-2.7
4,384,716	+				+0.9
4,384,716	+				+0.7
4,384,716	+				+1.4
4,384,716	+				+0.7
4,384,716	+				-0.1
4,384,716	+				+0.6
4,384,716	+				+1.2
4,384,717	-				+0.1
4,384,735	-				+1.5
4,384,735	-				+1.3
4,384,735	-				-0.3
4,384,735	-				-0.4
4,384,735	-				-0.8
4,384,738	+				-2.6
4,384,760	-				+0.6
4,384,766	+				+0.3
4,384,766	+				-0.1
4,384,767	-				+0.1
4,384,784	+				-0.4
4,384,784	+				+1.9
4,384,785	-				+0.2
4,384,785	-				-2.3
4,384,785	-				+0.3
4,384,785	-				-1.4
4,384,785	-				+0.2
4,384,785	-				-0.1
4,384,884	+				+1.5
4,384,968	+				-0.3
4,384,968	+				+0.5
4,384,968	+				+0.3
4,384,968	+				+0.4
4,384,968	+				-0.1
4,384,968	+				+2.9
4,384,969	-				-0.4
4,384,969	-				+1.3
4,384,969	-				-1.4
4,384,969	-				+0.4
4,384,969	-				+0.2
4,384,969	-				-0.9
4,384,969	-				-0.1
4,384,969	-				+0.1
4,384,969	-				-0.6
4,384,969	-				-0.3
4,384,969	-				-1.7
4,384,969	-				-0.9
4,384,969	-				-0.7
4,384,969	-				+0.7
4,384,969	-				+0.3
4,385,013	+				-1.3
4,385,013	+				+0.2
4,385,032	+				-2.8
4,385,086	+		DZA65_RS20235	0.14	+1.5
4,385,086	+		DZA65_RS20235	0.14	-0.1
4,385,087	-		DZA65_RS20235	0.14	-0.9
4,385,105	+		DZA65_RS20235	0.15	+1.2
4,385,106	-		DZA65_RS20235	0.15	+0.3
4,385,164	+		DZA65_RS20235	0.19	-2.3
4,385,164	+		DZA65_RS20235	0.19	-0.8
4,385,165	-		DZA65_RS20235	0.19	-1.0
4,385,187	+		DZA65_RS20235	0.20	+0.5
4,385,187	+		DZA65_RS20235	0.20	-0.1
4,385,187	+		DZA65_RS20235	0.20	-0.7
4,385,188	-		DZA65_RS20235	0.21	-1.9
4,385,216	-		DZA65_RS20235	0.22	+0.5
4,385,280	+		DZA65_RS20235	0.27	-1.1
4,385,280	+		DZA65_RS20235	0.27	-0.1
4,385,281	-		DZA65_RS20235	0.27	+1.6
4,385,281	-		DZA65_RS20235	0.27	-0.1
4,385,281	-		DZA65_RS20235	0.27	-1.1
4,385,281	-		DZA65_RS20235	0.27	-0.1
4,385,361	+		DZA65_RS20235	0.32	-0.9
4,385,501	+		DZA65_RS20235	0.42	+0.5
4,385,501	+		DZA65_RS20235	0.42	-1.3
4,385,502	-		DZA65_RS20235	0.42	-1.1
4,385,502	-		DZA65_RS20235	0.42	-1.9
4,385,587	-		DZA65_RS20235	0.48	+0.9
4,385,587	-		DZA65_RS20235	0.48	-0.4
4,385,627	+		DZA65_RS20235	0.51	-0.1
4,385,627	+		DZA65_RS20235	0.51	-1.1
4,385,627	+		DZA65_RS20235	0.51	-2.8
4,385,627	+		DZA65_RS20235	0.51	-0.4
4,385,627	+		DZA65_RS20235	0.51	+0.5
4,385,627	+		DZA65_RS20235	0.51	+1.2
4,385,627	+		DZA65_RS20235	0.51	-0.4
4,385,628	-		DZA65_RS20235	0.51	+0.3
4,385,628	-		DZA65_RS20235	0.51	+1.3
4,385,628	-		DZA65_RS20235	0.51	+1.2
4,385,628	-		DZA65_RS20235	0.51	-1.4
4,385,628	-		DZA65_RS20235	0.51	+0.4
4,385,628	-		DZA65_RS20235	0.51	-0.1
4,385,628	-		DZA65_RS20235	0.51	+0.4
4,385,656	+		DZA65_RS20235	0.53	-1.1
4,385,757	+		DZA65_RS20235	0.60	+0.5
4,385,884	+		DZA65_RS20235	0.68	+2.3
4,385,884	+		DZA65_RS20235	0.68	-0.7
4,385,884	+		DZA65_RS20235	0.68	+0.4
4,385,885	-		DZA65_RS20235	0.68	-0.6
4,386,038	+		DZA65_RS20235	0.79	-0.9
4,386,038	+		DZA65_RS20235	0.79	-0.8
4,386,038	+		DZA65_RS20235	0.79	-1.2
4,386,044	+		DZA65_RS20235	0.79	+0.3
4,386,044	+		DZA65_RS20235	0.79	-0.3
4,386,044	+		DZA65_RS20235	0.79	-0.6
4,386,044	+		DZA65_RS20235	0.79	-1.4
4,386,045	-		DZA65_RS20235	0.79	-1.9
4,386,045	-		DZA65_RS20235	0.79	-1.2
4,386,045	-		DZA65_RS20235	0.79	-1.1
4,386,045	-		DZA65_RS20235	0.79	-0.2
4,386,045	-		DZA65_RS20235	0.79	-0.8
4,386,045	-		DZA65_RS20235	0.79	-2.7
4,386,045	-		DZA65_RS20235	0.79	-2.4
4,386,045	-		DZA65_RS20235	0.79	+1.2
4,386,045	-		DZA65_RS20235	0.79	+0.3
4,386,045	-		DZA65_RS20235	0.79	-0.6
4,386,053	+		DZA65_RS20235	0.80	-0.5
4,386,053	+		DZA65_RS20235	0.80	+0.9
4,386,053	+		DZA65_RS20235	0.80	-0.1
4,386,054	-		DZA65_RS20235	0.80	-0.4
4,386,119	-		DZA65_RS20235	0.85	-1.4
4,386,177	-		DZA65_RS20235	0.89	+0.7
4,386,177	-		DZA65_RS20235	0.89	-1.4
4,386,177	-				-0.1
4,386,195	-		DZA65_RS20235	0.90	+1.5
4,386,338	+				+0.3
4,386,346	+				+0.1
4,386,346	+				+1.0
4,386,347	-				-0.7
4,386,397	+				+4.5
4,386,405	+				-0.5
4,386,405	+				-0.2
4,386,406	-				+0.2
4,386,430	-				-1.9
4,386,469	+				+1.5
4,386,482	+				-1.4
4,386,482	+				+0.5
4,386,484	+				+0.1
4,386,485	-				-0.9
4,386,485	-				-0.0
4,386,485	-				-1.4
4,386,485	-				+0.4
4,386,485	-				-0.7
4,386,529	+				-0.5
4,386,529	+				-1.4
4,386,530	-				-1.8
4,386,530	-				+0.5
4,386,530	-				-0.7
4,386,530	-				+0.3
4,386,564	+				-0.2
4,386,564	+				+0.2
4,386,564	+				+0.3
4,386,564	+				+1.6
4,386,564	+				-0.8
4,386,564	+				-1.4
4,386,564	+				-0.3
4,386,564	+				-0.5
4,386,565	-				+0.5
4,386,565	-				+0.8
4,386,565	-				+0.9
4,386,565	-				-0.7
4,386,565	-				-1.1
4,386,565	-				-0.3
4,386,565	-				-0.9
4,386,565	-				+0.7
4,386,598	+				-1.4
4,386,598	+				-0.1
4,386,610	+				-1.4
4,386,610	+				+0.7
4,386,611	-				+0.2
4,386,611	-				-0.9
4,386,641	+				+0.9
4,386,641	+				-0.1
4,386,641	+				+0.2
4,386,641	+				-1.4
4,386,642	-				-0.1
4,386,642	-				+2.0
4,386,642	-				+2.2
4,386,642	-				-1.7
4,386,642	-				+0.3
4,386,643	+				+0.7
4,386,643	+				-0.5
4,386,643	+				+0.4
4,386,643	+				-0.3
4,386,644	-				-1.9
4,386,644	-				+3.1
4,386,644	-				-2.4
4,386,644	-				-0.1
4,386,644	-				+0.0
4,386,650	+				+1.6
4,386,650	+				+1.5
4,386,651	-				-1.7
4,386,651	-				-0.4
4,386,651	-				+0.5
4,386,651	-				+2.7
4,386,651	-				-0.2
4,386,651	-				+0.2
4,386,651	-				-0.3
4,386,651	-				-0.3
4,386,651	-				-0.1
4,386,654	+				-0.5
4,386,654	+				-0.3
4,386,654	+				+0.9
4,386,655	-				-0.8
4,386,655	-				-0.9
4,386,655	-				+0.2
4,386,660	+				+0.9
4,386,661	-				-0.8
4,386,682	-				+0.9
4,386,685	+				-0.2
4,386,686	-				-0.2
4,386,686	-				-0.7
4,386,686	-				+0.5
4,386,686	-				-1.3
4,386,766	+				-0.2
4,386,766	+				-2.6
4,386,766	+				+0.8
4,386,767	-				-0.8
4,386,767	-				+1.5
4,386,767	-				+0.0
4,386,773	+				+0.5
4,386,774	-				-1.4
4,386,777	+				+0.3
4,386,777	+				-2.1
4,386,777	+				+0.9
4,386,777	+				+1.2
4,386,778	-				-1.4
4,386,778	-				-0.1
4,386,778	-				-0.5
4,386,778	-				-2.3
4,386,778	-				+1.0
4,386,778	-				+0.3
4,386,778	-				+0.3
4,386,778	-				-0.5
4,386,788	+				-0.1
4,386,789	-				-0.8
4,386,789	-				+0.5
4,386,789	-				-0.7
4,386,814	-				+0.4
4,386,890	+				+0.6
4,386,890	+				-1.0
4,386,891	-				+1.1
4,386,919	+				-1.4
4,386,919	+				+0.3
4,386,919	+				+0.7
4,386,919	+				-1.2
4,386,919	+				+0.7
4,386,919	+				-0.3
4,386,919	+				-1.1
4,386,919	+				+0.8
4,386,920	-				-0.7
4,386,920	-				-0.9
4,386,920	-				+1.2
4,386,920	-				-0.7
4,386,920	-				-0.7
4,386,920	-				+1.6
4,386,920	-				+0.9
4,386,920	-				-0.0
4,386,920	-				+0.9
4,386,956	+				-0.3
4,386,956	+				-0.4
4,386,994	+		DZA65_RS20245	0.11	-1.0
4,386,994	+		DZA65_RS20245	0.11	-0.7
4,386,994	+		DZA65_RS20245	0.11	+0.4
4,386,994	+		DZA65_RS20245	0.11	+0.8
4,386,995	-		DZA65_RS20245	0.12	-0.2
4,386,995	-		DZA65_RS20245	0.12	-0.6
4,386,995	-		DZA65_RS20245	0.12	-1.7
4,386,995	-		DZA65_RS20245	0.12	+1.6
4,387,017	+		DZA65_RS20245	0.13	-0.3
4,387,102	-		DZA65_RS20245	0.20	+0.3
4,387,102	-		DZA65_RS20245	0.20	-0.1
4,387,143	+		DZA65_RS20245	0.23	-1.9
4,387,143	+		DZA65_RS20245	0.23	+1.1
4,387,144	-		DZA65_RS20245	0.23	+0.4
4,387,152	+		DZA65_RS20245	0.24	-0.1
4,387,153	-		DZA65_RS20245	0.24	+0.0
4,387,153	-		DZA65_RS20245	0.24	-1.1
4,387,153	-		DZA65_RS20245	0.24	-0.1
4,387,153	-		DZA65_RS20245	0.24	+0.6
4,387,153	-		DZA65_RS20245	0.24	-0.7
4,387,153	-		DZA65_RS20245	0.24	+0.1
4,387,184	+		DZA65_RS20245	0.26	+0.6
4,387,184	+		DZA65_RS20245	0.26	+0.1
4,387,185	-		DZA65_RS20245	0.26	+1.0
4,387,185	-		DZA65_RS20245	0.26	+0.9
4,387,197	+		DZA65_RS20245	0.27	-0.4
4,387,197	+		DZA65_RS20245	0.27	-1.2
4,387,197	+		DZA65_RS20245	0.27	+1.5
4,387,197	+		DZA65_RS20245	0.27	+1.4
4,387,197	+		DZA65_RS20245	0.27	+1.0
4,387,198	-		DZA65_RS20245	0.27	+0.3
4,387,198	-		DZA65_RS20245	0.27	-1.1
4,387,198	-		DZA65_RS20245	0.27	-0.2
4,387,198	-		DZA65_RS20245	0.27	+2.0
4,387,198	-		DZA65_RS20245	0.27	+0.7
4,387,198	-		DZA65_RS20245	0.27	-0.3
4,387,250	+		DZA65_RS20245	0.31	-1.6
4,387,250	+		DZA65_RS20245	0.31	+0.3
4,387,250	+		DZA65_RS20245	0.31	+0.1
4,387,250	+		DZA65_RS20245	0.31	+0.2
4,387,250	+		DZA65_RS20245	0.31	+0.9
4,387,250	+		DZA65_RS20245	0.31	-0.6
4,387,250	+		DZA65_RS20245	0.31	+2.9
4,387,250	+		DZA65_RS20245	0.31	+0.2
4,387,251	-		DZA65_RS20245	0.31	-1.1
4,387,251	-		DZA65_RS20245	0.31	+0.8
4,387,251	-		DZA65_RS20245	0.31	+0.9
4,387,251	-		DZA65_RS20245	0.31	-0.3
4,387,251	-		DZA65_RS20245	0.31	+0.6
4,387,251	-		DZA65_RS20245	0.31	+0.0
4,387,251	-		DZA65_RS20245	0.31	-0.1
4,387,251	-		DZA65_RS20245	0.31	+0.3
4,387,304	+		DZA65_RS20245	0.36	+0.2
4,387,304	+		DZA65_RS20245	0.36	-0.8
4,387,305	-		DZA65_RS20245	0.36	-0.7