Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20215

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,377,973	-		DZA65_RS20210	0.31	-2.1
4,378,494	+		DZA65_RS20210	0.81	+0.9
4,378,687	+				-0.2
4,378,691	+				-0.4
4,378,691	+				-0.7
4,378,691	+				-2.4
4,378,691	+				-0.7
4,378,691	+				-0.8
4,378,691	+				-1.1
4,378,691	+				-0.9
4,378,692	-				+0.9
4,378,692	-				-0.3
4,378,751	+				+0.2
4,378,751	+				+1.0
4,378,751	+				+1.0
4,378,751	+				-1.9
4,378,751	+				-0.4
4,378,751	+				+0.1
4,378,751	+				+0.3
4,378,751	+				+1.9
4,378,752	-				+0.7
4,378,752	-				+1.1
4,378,752	-				-0.3
4,378,752	-				-0.0
4,378,752	-				+0.5
4,378,752	-				-0.9
4,378,752	-				+0.5
4,378,752	-				+0.1
4,378,752	-				-0.0
4,378,752	-				+1.2
4,378,752	-				+0.0
4,378,753	+				-0.1
4,378,753	+				-0.1
4,378,753	+				+0.4
4,378,753	+				-1.4
4,378,753	+				+0.5
4,378,753	+				-0.6
4,378,753	+				+0.7
4,378,753	+				-0.6
4,378,754	-				+1.3
4,378,754	-				+2.2
4,378,754	-				-0.1
4,378,754	-				-1.4
4,378,798	-		DZA65_RS20215	0.17	-0.5
4,378,798	-		DZA65_RS20215	0.17	-0.1
4,378,833	+		DZA65_RS20215	0.27	+1.3
4,378,833	+		DZA65_RS20215	0.27	-0.1
4,378,833	+		DZA65_RS20215	0.27	+1.1
4,378,833	+		DZA65_RS20215	0.27	-0.7
4,378,833	+		DZA65_RS20215	0.27	+0.4
4,378,833	+		DZA65_RS20215	0.27	-0.0
4,378,833	+		DZA65_RS20215	0.27	+1.2
4,378,833	+		DZA65_RS20215	0.27	-0.0
4,378,834	-		DZA65_RS20215	0.27	+0.7
4,378,834	-		DZA65_RS20215	0.27	+2.6
4,378,834	-		DZA65_RS20215	0.27	-0.3
4,378,834	-		DZA65_RS20215	0.27	+0.1
4,378,834	-		DZA65_RS20215	0.27	+0.3
4,378,834	-		DZA65_RS20215	0.27	+0.5
4,378,834	-		DZA65_RS20215	0.27	-1.2
4,378,976	+		DZA65_RS20215	0.68	-1.1
4,378,976	+		DZA65_RS20215	0.68	-1.0
4,378,977	-		DZA65_RS20215	0.69	-0.1
4,378,985	+		DZA65_RS20215	0.71	+0.4
4,378,986	-		DZA65_RS20215	0.71	+2.3
4,379,021	+		DZA65_RS20215	0.81	-0.3
4,379,027	+		DZA65_RS20215	0.83	-1.1
4,379,027	+		DZA65_RS20215	0.83	-0.2
4,379,070	+				-0.9
4,379,071	-				-0.7
4,379,071	-				+0.6
4,379,072	+				-0.9
4,379,072	+				-1.4
4,379,072	+				-0.1
4,379,072	+				+0.4
4,379,072	+				+0.6
4,379,072	+				+0.3
4,379,072	+				+1.3
4,379,072	+				-2.1
4,379,072	+				+0.7
4,379,072	+				-1.2
4,379,073	-				+0.9
4,379,073	-				-3.4
4,379,073	-				-0.7
4,379,073	-				-0.7
4,379,073	-				-0.1
4,379,100	-				+0.5
4,379,106	+				+0.5
4,379,106	+				+0.1
4,379,107	-				+0.5
4,379,107	-				+0.1
4,379,151	+				-0.3
4,379,151	+				+0.7
4,379,152	-				-0.7
4,379,173	-				-0.1
4,379,211	+				-1.6
4,379,211	+				+0.7
4,379,211	+				-0.8
4,379,211	+				-1.4
4,379,211	+				-0.5
4,379,211	+				+0.3
4,379,211	+				-0.4
4,379,211	+				-0.1
4,379,211	+				+0.3
4,379,211	+				+0.3
4,379,211	+				+0.2
4,379,211	+				-1.6
4,379,211	+				+0.1
4,379,211	+				-1.7
4,379,212	-				-0.3
4,379,212	-				+0.5
4,379,212	-				+0.5
4,379,212	-				-0.7
4,379,212	-				-0.1
4,379,212	-				-0.5
4,379,212	-				-2.0
4,379,212	-				+0.9
4,379,212	-				-1.7
4,379,212	-				-0.1
4,379,212	-				+0.6
4,379,212	-				+0.4
4,379,212	-				+0.7
4,379,212	-				+0.6
4,379,283	+				-0.3
4,379,283	+				-0.8
4,379,283	+				+0.6
4,379,286	+				+0.5
4,379,286	+				+1.5
4,379,286	+				-0.4
4,379,286	+				+0.6
4,379,286	+				-0.5
4,379,286	+				-0.7
4,379,286	+				-0.1
4,379,286	+				+2.3
4,379,286	+				+1.7
4,379,287	-				-1.1
4,379,287	-				-0.3
4,379,287	-				-2.3
4,379,287	-				-0.1
4,379,305	+				-0.1
4,379,345	+				+0.9
4,379,346	-				-0.7
4,379,346	-				+0.9
4,379,546	+		DZA65_RS20220	0.15	-0.7
4,379,569	-		DZA65_RS20220	0.16	-2.7
4,379,569	-		DZA65_RS20220	0.16	+1.9
4,379,569	-		DZA65_RS20220	0.16	-0.7
4,379,788	+		DZA65_RS20220	0.29	+0.9
4,379,788	+		DZA65_RS20220	0.29	+0.9
4,379,789	-		DZA65_RS20220	0.29	+0.1
4,379,845	+		DZA65_RS20220	0.33	+0.6
4,379,875	+		DZA65_RS20220	0.35	-1.7
4,379,875	+		DZA65_RS20220	0.35	-0.9
4,379,876	-		DZA65_RS20220	0.35	-0.1
4,379,876	-		DZA65_RS20220	0.35	-2.7
4,379,876	-		DZA65_RS20220	0.35	-0.1
4,379,876	-		DZA65_RS20220	0.35	-1.7
4,379,930	+		DZA65_RS20220	0.38	-1.7
4,379,930	+		DZA65_RS20220	0.38	-3.5
4,379,930	+		DZA65_RS20220	0.38	-0.1
4,379,930	+		DZA65_RS20220	0.38	-0.1
4,379,930	+		DZA65_RS20220	0.38	-0.3
4,379,930	+		DZA65_RS20220	0.38	-1.4
4,379,930	+		DZA65_RS20220	0.38	-0.3
4,379,930	+		DZA65_RS20220	0.38	-0.2
4,379,930	+		DZA65_RS20220	0.38	-0.4
4,379,930	+		DZA65_RS20220	0.38	+0.0
4,379,930	+		DZA65_RS20220	0.38	-0.4
4,379,930	+		DZA65_RS20220	0.38	-1.1
4,379,930	+		DZA65_RS20220	0.38	+0.9
4,379,930	+		DZA65_RS20220	0.38	-1.4
4,379,930	+		DZA65_RS20220	0.38	-1.7
4,379,930	+		DZA65_RS20220	0.38	-0.7
4,379,930	+		DZA65_RS20220	0.38	+0.0
4,379,930	+		DZA65_RS20220	0.38	-0.7
4,379,931	-		DZA65_RS20220	0.38	-0.3
4,379,931	-		DZA65_RS20220	0.38	-0.7
4,379,931	-		DZA65_RS20220	0.38	-1.3
4,379,931	-		DZA65_RS20220	0.38	-0.9
4,379,931	-		DZA65_RS20220	0.38	-1.1
4,379,931	-		DZA65_RS20220	0.38	-0.7
4,379,931	-		DZA65_RS20220	0.38	-1.7
4,379,931	-		DZA65_RS20220	0.38	-4.3
4,379,931	-				+1.3
4,379,931	-		DZA65_RS20220	0.38	-3.1
4,379,931	-		DZA65_RS20220	0.38	+0.9
4,379,931	-		DZA65_RS20220	0.38	+0.9
4,379,931	-		DZA65_RS20220	0.38	-0.8
4,379,931	-		DZA65_RS20220	0.38	-2.3
4,379,932	+		DZA65_RS20220	0.38	-1.4
4,379,932	+		DZA65_RS20220	0.38	-1.3
4,379,933	-		DZA65_RS20220	0.38	-2.1
4,379,933	-		DZA65_RS20220	0.38	+0.4
4,379,933	-		DZA65_RS20220	0.38	+2.6
4,379,933	-		DZA65_RS20220	0.38	-0.7
4,379,933	-		DZA65_RS20220	0.38	-0.1
4,379,983	+		DZA65_RS20220	0.41	-0.5
4,379,983	+		DZA65_RS20220	0.41	-0.9
4,379,983	+		DZA65_RS20220	0.41	-1.7
4,379,984	-		DZA65_RS20220	0.41	-1.1