Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20130

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,361,240	+				-1.4
4,361,240	+				-1.1
4,361,241	-				-0.1
4,361,346	+		DZA65_RS20125	0.16	+0.6
4,361,347	-		DZA65_RS20125	0.16	+0.0
4,361,347	-		DZA65_RS20125	0.16	-1.1
4,361,347	-		DZA65_RS20125	0.16	-1.0
4,361,411	-		DZA65_RS20125	0.23	+0.7
4,361,417	+		DZA65_RS20125	0.24	+1.1
4,361,417	+		DZA65_RS20125	0.24	+0.5
4,361,418	-		DZA65_RS20125	0.24	+0.5
4,361,418	-		DZA65_RS20125	0.24	+0.0
4,361,418	-		DZA65_RS20125	0.24	+0.7
4,361,436	-		DZA65_RS20125	0.26	+0.0
4,361,441	+		DZA65_RS20125	0.26	+0.0
4,361,441	+		DZA65_RS20125	0.26	+1.7
4,361,442	-		DZA65_RS20125	0.26	+0.9
4,361,442	-		DZA65_RS20125	0.26	+0.9
4,361,442	-		DZA65_RS20125	0.26	-1.7
4,361,442	-		DZA65_RS20125	0.26	+1.0
4,361,442	-		DZA65_RS20125	0.26	-0.8
4,361,442	-		DZA65_RS20125	0.26	+1.8
4,361,480	+		DZA65_RS20125	0.30	-1.1
4,361,480	+		DZA65_RS20125	0.30	+2.3
4,361,480	+		DZA65_RS20125	0.30	+1.2
4,361,480	+		DZA65_RS20125	0.30	-0.7
4,361,480	+		DZA65_RS20125	0.30	+0.3
4,361,480	+		DZA65_RS20125	0.30	-0.7
4,361,480	+		DZA65_RS20125	0.30	+0.6
4,361,480	+		DZA65_RS20125	0.30	-1.4
4,361,480	+		DZA65_RS20125	0.30	+0.3
4,361,480	+		DZA65_RS20125	0.30	+0.4
4,361,481	-		DZA65_RS20125	0.30	+0.3
4,361,481	-		DZA65_RS20125	0.30	-1.6
4,361,481	-		DZA65_RS20125	0.30	+0.5
4,361,481	-		DZA65_RS20125	0.30	+0.9
4,361,481	-		DZA65_RS20125	0.30	+0.1
4,361,481	-		DZA65_RS20125	0.30	+0.7
4,361,481	-		DZA65_RS20125	0.30	+1.0
4,361,481	-		DZA65_RS20125	0.30	+1.5
4,361,481	-		DZA65_RS20125	0.30	+0.4
4,361,481	-		DZA65_RS20125	0.30	-1.4
4,361,483	+		DZA65_RS20125	0.31	+0.9
4,361,483	+		DZA65_RS20125	0.31	+1.3
4,361,483	+		DZA65_RS20125	0.31	-2.4
4,361,484	-		DZA65_RS20125	0.31	-2.1
4,361,484	-		DZA65_RS20125	0.31	+0.2
4,361,484	-		DZA65_RS20125	0.31	-0.0
4,361,484	-		DZA65_RS20125	0.31	+0.4
4,361,486	-		DZA65_RS20125	0.31	-0.0
4,361,516	-		DZA65_RS20125	0.34	+0.9
4,361,516	-		DZA65_RS20125	0.34	+0.7
4,361,577	+		DZA65_RS20125	0.41	+0.5
4,361,578	-		DZA65_RS20125	0.41	+1.4
4,361,578	-		DZA65_RS20125	0.41	-1.3
4,361,596	+		DZA65_RS20125	0.43	-0.3
4,361,597	-		DZA65_RS20125	0.43	+1.5
4,361,598	+		DZA65_RS20125	0.43	-0.5
4,361,598	+		DZA65_RS20125	0.43	+2.0
4,361,599	-		DZA65_RS20125	0.43	+0.7
4,361,599	-		DZA65_RS20125	0.43	-0.1
4,361,599	-		DZA65_RS20125	0.43	-0.4
4,361,624	+		DZA65_RS20125	0.46	+2.2
4,361,624	+		DZA65_RS20125	0.46	+0.9
4,361,624	+		DZA65_RS20125	0.46	-0.1
4,361,624	+		DZA65_RS20125	0.46	+0.2
4,361,624	+		DZA65_RS20125	0.46	-0.1
4,361,624	+		DZA65_RS20125	0.46	+2.2
4,361,624	+		DZA65_RS20125	0.46	-0.8
4,361,625	-		DZA65_RS20125	0.46	-2.1
4,361,628	+		DZA65_RS20125	0.46	+0.6
4,361,628	+		DZA65_RS20125	0.46	-0.7
4,361,629	-		DZA65_RS20125	0.46	+0.3
4,361,629	-		DZA65_RS20125	0.46	-0.1
4,361,629	-		DZA65_RS20125	0.46	-1.0
4,361,629	-		DZA65_RS20125	0.46	+0.9
4,361,629	-		DZA65_RS20125	0.46	-0.3
4,361,632	+		DZA65_RS20125	0.47	+0.9
4,361,632	+		DZA65_RS20125	0.47	-0.7
4,361,632	+		DZA65_RS20125	0.47	+0.6
4,361,632	+		DZA65_RS20125	0.47	+1.4
4,361,632	+		DZA65_RS20125	0.47	-0.1
4,361,632	+		DZA65_RS20125	0.47	-0.1
4,361,632	+		DZA65_RS20125	0.47	-0.6
4,361,633	-		DZA65_RS20125	0.47	+0.2
4,361,633	-		DZA65_RS20125	0.47	-1.1
4,361,633	-		DZA65_RS20125	0.47	-0.6
4,361,633	-		DZA65_RS20125	0.47	+0.3
4,361,633	-		DZA65_RS20125	0.47	-1.4
4,361,633	-		DZA65_RS20125	0.47	-0.9
4,361,757	+		DZA65_RS20125	0.60	-0.7
4,361,757	+		DZA65_RS20125	0.60	+0.2
4,361,758	-		DZA65_RS20125	0.60	-0.4
4,361,758	-		DZA65_RS20125	0.60	+1.0
4,361,758	-		DZA65_RS20125	0.60	+0.0
4,361,771	+		DZA65_RS20125	0.62	+1.3
4,361,772	-		DZA65_RS20125	0.62	-0.1
4,361,772	-		DZA65_RS20125	0.62	+1.3
4,361,878	+		DZA65_RS20125	0.73	-0.0
4,361,879	-		DZA65_RS20125	0.73	-0.5
4,361,879	-		DZA65_RS20125	0.73	+0.7
4,361,961	+		DZA65_RS20125	0.82	-1.1
4,361,962	-		DZA65_RS20125	0.82	-1.4
4,362,007	+		DZA65_RS20125	0.87	+0.3
4,362,008	-		DZA65_RS20125	0.87	+0.2
4,362,010	+		DZA65_RS20125	0.87	+0.4
4,362,010	+		DZA65_RS20125	0.87	+1.4
4,362,010	+		DZA65_RS20125	0.87	-0.6
4,362,010	+		DZA65_RS20125	0.87	+0.5
4,362,011	-		DZA65_RS20125	0.87	+2.1
4,362,011	-		DZA65_RS20125	0.87	+0.4
4,362,011	-		DZA65_RS20125	0.87	+0.7
4,362,011	-		DZA65_RS20125	0.87	+0.3
4,362,011	-		DZA65_RS20125	0.87	-0.0
4,362,016	-		DZA65_RS20125	0.88	-0.2
4,362,071	+				-0.5
4,362,074	+				-0.1
4,362,127	+				-0.2
4,362,128	-				+0.9
4,362,128	-				+1.0
4,362,128	-				-0.5
4,362,132	+				+2.9
4,362,132	+				+1.1
4,362,213	+				-0.7
4,362,218	-				-0.3
4,362,242	-				-0.5
4,362,244	-				-0.9
4,362,276	-				-0.4
4,362,276	-				+0.1
4,362,346	+		DZA65_RS20130	0.14	+0.1
4,362,347	-		DZA65_RS20130	0.14	-0.9
4,362,710	-		DZA65_RS20130	0.57	+0.6
4,362,765	+		DZA65_RS20130	0.63	-1.7
4,362,800	-		DZA65_RS20130	0.67	-1.1
4,362,868	+		DZA65_RS20130	0.75	+0.7
4,362,869	-		DZA65_RS20130	0.75	-0.6
4,362,878	-		DZA65_RS20130	0.76	-1.1
4,362,936	+		DZA65_RS20130	0.83	-1.8
4,362,983	+		DZA65_RS20130	0.89	-0.8
4,362,983	+		DZA65_RS20130	0.89	+0.1
4,362,983	+		DZA65_RS20130	0.89	-1.1
4,362,983	+		DZA65_RS20130	0.89	+1.3
4,363,015	-				-0.9
4,363,041	-				-0.1
4,363,041	-				+0.9
4,363,048	+				+1.0
4,363,057	+				-0.4
4,363,081	+				-0.6
4,363,081	+				+0.9
4,363,081	+				+1.5
4,363,082	-				-0.4
4,363,082	-				+0.1
4,363,089	-				+0.9
4,363,096	-				-0.3
4,363,203	-		DZA65_RS20135	0.15	+1.3
4,363,288	-		DZA65_RS20135	0.25	-0.4
4,363,306	+		DZA65_RS20135	0.28	+0.2
4,363,306	+		DZA65_RS20135	0.28	-0.0
4,363,306	+		DZA65_RS20135	0.28	+2.2
4,363,306	+		DZA65_RS20135	0.28	-0.0
4,363,306	+		DZA65_RS20135	0.28	-1.7
4,363,306	+		DZA65_RS20135	0.28	+0.9
4,363,306	+		DZA65_RS20135	0.28	+1.2
4,363,306	+		DZA65_RS20135	0.28	+0.2
4,363,306	+		DZA65_RS20135	0.28	+1.3
4,363,306	+		DZA65_RS20135	0.28	-0.6
4,363,306	+		DZA65_RS20135	0.28	-1.1
4,363,307	-		DZA65_RS20135	0.28	+1.6
4,363,307	-		DZA65_RS20135	0.28	-0.6
4,363,307	-		DZA65_RS20135	0.28	-1.1
4,363,307	-		DZA65_RS20135	0.28	+0.6
4,363,307	-		DZA65_RS20135	0.28	-0.5
4,363,311	+		DZA65_RS20135	0.28	-1.2
4,363,311	+		DZA65_RS20135	0.28	+0.5
4,363,311	+		DZA65_RS20135	0.28	+0.0
4,363,311	+		DZA65_RS20135	0.28	+0.0
4,363,311	+		DZA65_RS20135	0.28	-0.1
4,363,311	+		DZA65_RS20135	0.28	+1.1
4,363,311	+		DZA65_RS20135	0.28	-0.3
4,363,311	+		DZA65_RS20135	0.28	+2.0
4,363,312	-		DZA65_RS20135	0.28	-0.9
4,363,312	-				+0.3
4,363,315	+		DZA65_RS20135	0.29	+0.1
4,363,315	+		DZA65_RS20135	0.29	+0.2
4,363,315	+		DZA65_RS20135	0.29	+0.1
4,363,316	-		DZA65_RS20135	0.29	-0.1
4,363,316	-		DZA65_RS20135	0.29	+0.1
4,363,356	+		DZA65_RS20135	0.34	-0.2
4,363,356	+		DZA65_RS20135	0.34	+0.5
4,363,357	-		DZA65_RS20135	0.34	+0.3
4,363,357	-		DZA65_RS20135	0.34	-0.2
4,363,357	-		DZA65_RS20135	0.34	+0.6
4,363,357	-		DZA65_RS20135	0.34	+0.0
4,363,357	-		DZA65_RS20135	0.34	+0.4
4,363,357	-		DZA65_RS20135	0.34	-0.1
4,363,461	+		DZA65_RS20135	0.46	-0.3
4,363,461	+		DZA65_RS20135	0.46	+0.1
4,363,462	-		DZA65_RS20135	0.46	-0.7
4,363,462	-		DZA65_RS20135	0.46	-0.4
4,363,486	+		DZA65_RS20135	0.49	-0.0
4,363,487	-		DZA65_RS20135	0.49	-0.1
4,363,487	-		DZA65_RS20135	0.49	+0.4
4,363,542	+		DZA65_RS20135	0.56	-2.1
4,363,641	+		DZA65_RS20135	0.68	+0.9
4,363,716	+		DZA65_RS20135	0.77	+0.7
4,363,716	+		DZA65_RS20135	0.77	-1.1
4,363,716	+		DZA65_RS20135	0.77	-0.7
4,363,716	+		DZA65_RS20135	0.77	-0.3
4,363,716	+		DZA65_RS20135	0.77	-0.3
4,363,716	+		DZA65_RS20135	0.77	-1.7
4,363,716	+		DZA65_RS20135	0.77	+1.5
4,363,716	+		DZA65_RS20135	0.77	+0.7
4,363,716	+		DZA65_RS20135	0.77	-0.0
4,363,716	+		DZA65_RS20135	0.77	-0.1
4,363,716	+		DZA65_RS20135	0.77	-1.4
4,363,716	+		DZA65_RS20135	0.77	+0.4
4,363,716	+		DZA65_RS20135	0.77	+0.6
4,363,717	-		DZA65_RS20135	0.77	-0.6
4,363,717	-		DZA65_RS20135	0.77	-0.7
4,363,717	-		DZA65_RS20135	0.77	-0.4
4,363,717	-		DZA65_RS20135	0.77	+0.4
4,363,717	-		DZA65_RS20135	0.77	+0.1
4,363,717	-		DZA65_RS20135	0.77	-1.1
4,363,717	-		DZA65_RS20135	0.77	+0.5
4,363,939	+				-0.3
4,363,939	+				-2.6
4,363,950	+				-0.1
4,363,950	+				-0.3
4,363,950	+				-1.1
4,363,950	+				+0.1
4,363,950	+				-0.1
4,363,950	+				+0.2
4,363,950	+				-1.0
4,363,950	+				+1.1
4,363,950	+				+3.9
4,363,950	+				+0.2
4,363,950	+				-0.6
4,363,950	+				-0.1
4,363,950	+				+0.9
4,363,950	+				+0.5
4,363,950	+				+0.3
4,363,951	-				-0.7
4,363,951	-				-0.1
4,363,951	-				+0.5
4,363,951	-				-0.7
4,363,951	-				-1.1
4,363,951	-				-1.6
4,363,951	-				+0.9
4,363,951	-				+1.6
4,363,951	-				-0.8
4,363,951	-				-0.9
4,363,951	-				+0.1
4,363,951	-				+0.9
4,363,987	-				-0.1
4,363,987	-				-0.6
4,364,002	-				+0.1
4,364,047	+				-0.2
4,364,058	-				+2.2