Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20035

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,332,863	+		DZA65_RS20030	0.37	-0.1
4,332,863	+		DZA65_RS20030	0.37	+0.6
4,332,863	+		DZA65_RS20030	0.37	-0.1
4,332,864	-		DZA65_RS20030	0.37	+1.7
4,332,864	-		DZA65_RS20030	0.37	+1.2
4,332,905	-		DZA65_RS20030	0.42	-0.8
4,332,905	-		DZA65_RS20030	0.42	+1.1
4,332,926	+		DZA65_RS20030	0.44	-0.6
4,332,926	+		DZA65_RS20030	0.44	+1.4
4,332,927	-		DZA65_RS20030	0.44	+1.1
4,332,927	-		DZA65_RS20030	0.44	-0.4
4,332,927	-		DZA65_RS20030	0.44	-1.9
4,332,927	-		DZA65_RS20030	0.44	+0.5
4,332,927	-		DZA65_RS20030	0.44	+2.3
4,332,940	+		DZA65_RS20030	0.46	+0.9
4,332,941	-		DZA65_RS20030	0.46	+1.2
4,332,941	-		DZA65_RS20030	0.46	-0.4
4,332,941	-		DZA65_RS20030	0.46	-0.3
4,332,941	-				+1.1
4,332,941	-		DZA65_RS20030	0.46	+1.3
4,332,973	+		DZA65_RS20030	0.49	+0.7
4,332,973	+		DZA65_RS20030	0.49	-0.4
4,332,974	-		DZA65_RS20030	0.50	-0.3
4,332,974	-		DZA65_RS20030	0.50	-0.9
4,332,974	-		DZA65_RS20030	0.50	+0.8
4,332,974	-		DZA65_RS20030	0.50	+0.7
4,332,974	-		DZA65_RS20030	0.50	-0.4
4,333,023	+		DZA65_RS20030	0.55	-0.3
4,333,024	-		DZA65_RS20030	0.55	-1.7
4,333,045	+		DZA65_RS20030	0.58	+0.5
4,333,045	+		DZA65_RS20030	0.58	+0.0
4,333,045	+		DZA65_RS20030	0.58	-0.7
4,333,046	-		DZA65_RS20030	0.58	+0.5
4,333,046	-		DZA65_RS20030	0.58	-1.1
4,333,046	-		DZA65_RS20030	0.58	+0.4
4,333,046	-		DZA65_RS20030	0.58	-1.6
4,333,072	+		DZA65_RS20030	0.61	-1.4
4,333,072	+		DZA65_RS20030	0.61	+1.4
4,333,072	+		DZA65_RS20030	0.61	-0.6
4,333,373	+				-0.3
4,333,393	+				+2.3
4,333,393	+				+1.9
4,333,393	+				+0.1
4,333,393	+				-1.4
4,333,393	+				+0.5
4,333,393	+				+0.4
4,333,393	+				+0.3
4,333,393	+				+1.1
4,333,394	-				-0.1
4,333,394	-				-0.1
4,333,394	-				+0.9
4,333,394	-				-1.4
4,333,394	-				+0.1
4,333,394	-				-1.0
4,333,394	-				-0.2
4,333,394	-				-0.1
4,333,394	-				+0.4
4,333,394	-				+0.0
4,333,480	+				+1.1
4,333,480	+				+0.4
4,333,480	+				-0.1
4,333,480	+				+1.0
4,333,480	+				+3.0
4,333,481	-				+0.6
4,333,681	+				+1.0
4,333,682	-				-1.0
4,333,686	+				+0.9
4,333,686	+				-0.4
4,333,686	+				+3.2
4,333,686	+				-0.6
4,333,687	-				-0.7
4,333,687	-				+1.6
4,333,687	-				-0.3
4,333,687	-				+0.7
4,333,687	-				+0.4
4,333,697	-				+0.4
4,333,715	+				+0.0
4,333,797	+				-0.2
4,333,815	-				-0.7
4,333,832	-				-0.2
4,333,877	+				+0.6
4,333,943	-		DZA65_RS20035	0.12	-0.5
4,333,955	+				+1.3
4,333,956	-		DZA65_RS20035	0.14	-0.0
4,333,957	+		DZA65_RS20035	0.14	-1.3
4,333,958	-		DZA65_RS20035	0.14	+0.6
4,334,037	+		DZA65_RS20035	0.24	-1.3
4,334,038	-		DZA65_RS20035	0.25	-1.3
4,334,064	-		DZA65_RS20035	0.28	+0.7
4,334,084	+		DZA65_RS20035	0.31	+2.1
4,334,084	+				+0.9
4,334,085	-		DZA65_RS20035	0.31	+2.4
4,334,101	+		DZA65_RS20035	0.33	+2.9
4,334,102	-		DZA65_RS20035	0.33	+0.5
4,334,146	+		DZA65_RS20035	0.39	+0.6
4,334,147	-		DZA65_RS20035	0.39	+0.9
4,334,147	-		DZA65_RS20035	0.39	-1.4
4,334,170	+		DZA65_RS20035	0.42	-0.7
4,334,170	+		DZA65_RS20035	0.42	+0.1
4,334,170	+		DZA65_RS20035	0.42	-0.9
4,334,170	+		DZA65_RS20035	0.42	-0.0
4,334,171	-		DZA65_RS20035	0.42	-0.3
4,334,171	-		DZA65_RS20035	0.42	-0.4
4,334,171	-				+3.5
4,334,171	-		DZA65_RS20035	0.42	+0.3
4,334,171	-		DZA65_RS20035	0.42	-1.0
4,334,171	-		DZA65_RS20035	0.42	+0.1
4,334,171	-		DZA65_RS20035	0.42	+0.2
4,334,183	-		DZA65_RS20035	0.44	-0.0
4,334,201	+		DZA65_RS20035	0.46	+0.6
4,334,202	-		DZA65_RS20035	0.47	-0.9
4,334,237	+		DZA65_RS20035	0.51	-1.4
4,334,251	+		DZA65_RS20035	0.53	+0.3
4,334,251	+		DZA65_RS20035	0.53	+0.9
4,334,252	-		DZA65_RS20035	0.53	+0.4
4,334,252	-		DZA65_RS20035	0.53	+0.5
4,334,266	+		DZA65_RS20035	0.55	-0.6
4,334,267	-		DZA65_RS20035	0.55	+0.1
4,334,267	-		DZA65_RS20035	0.55	-0.1
4,334,353	+		DZA65_RS20035	0.67	-1.9
4,334,353	+		DZA65_RS20035	0.67	+0.5
4,334,353	+		DZA65_RS20035	0.67	-0.3
4,334,354	-		DZA65_RS20035	0.67	+2.1
4,334,354	-		DZA65_RS20035	0.67	-1.1
4,334,354	-		DZA65_RS20035	0.67	+0.1
4,334,354	-		DZA65_RS20035	0.67	+0.9
4,334,423	+		DZA65_RS20035	0.76	+1.0
4,334,425	+		DZA65_RS20035	0.76	-0.1
4,334,426	-		DZA65_RS20035	0.77	-1.8
4,334,426	-		DZA65_RS20035	0.77	-0.1
4,334,435	+		DZA65_RS20035	0.78	-1.2
4,334,435	+				-0.7
4,334,436	-		DZA65_RS20035	0.78	+1.2
4,334,448	-		DZA65_RS20035	0.80	+0.3
4,334,463	-		DZA65_RS20035	0.82	-0.0
4,334,464	+		DZA65_RS20035	0.82	+1.6
4,334,464	+		DZA65_RS20035	0.82	+0.2
4,334,489	+				+0.9
4,334,489	+		DZA65_RS20035	0.85	+0.3
4,334,490	-		DZA65_RS20035	0.85	+0.3
4,334,490	-		DZA65_RS20035	0.85	+1.6
4,334,526	+				-1.9
4,334,526	+				-0.1
4,334,526	+				+1.4
4,334,527	-				+0.9
4,334,552	+				+0.2
4,334,553	-				-1.0
4,334,621	+				+1.1
4,334,624	+				-0.2
4,334,625	-				+0.5
4,334,625	-				+0.6
4,334,625	-				-0.7
4,334,627	-				+0.2
4,334,669	-				-0.4
4,334,724	-				-0.1
4,334,782	-				+0.4
4,334,783	+				+0.3
4,334,783	+				-0.3
4,334,784	-				+0.1
4,334,812	+				+1.4
4,334,813	-				+0.2
4,334,813	-				-0.9
4,334,813	-				-0.7
4,334,919	+				-0.7
4,335,099	+				+0.6
4,335,100	-				-0.0
4,335,100	-				+0.6
4,335,100	-				+0.3
4,335,100	-				-1.4
4,335,172	+				-0.1
4,335,172	+				+0.2
4,335,173	-				-0.0
4,335,173	-				-0.3
4,335,173	-				-1.0
4,335,173	-				-0.1
4,335,220	+				-1.7
4,335,220	+				+1.1
4,335,220	+				-1.1
4,335,220	+				-0.1
4,335,220	+				-0.4
4,335,221	-				-1.1
4,335,221	-				+0.8
4,335,221	-				+0.9
4,335,221	-				-0.6
4,335,221	-				-1.1
4,335,221	-				+0.9
4,335,221	-				+0.5
4,335,221	-				-0.1
4,335,229	+				+1.7
4,335,256	+				+0.9
4,335,256	+				-1.3
4,335,256	+				-1.6
4,335,256	+				+1.2
4,335,256	+				-0.4
4,335,257	-				-0.1
4,335,257	-				+0.9
4,335,257	-				+0.7
4,335,257	-				-0.4
4,335,257	-				-0.9
4,335,257	-				+2.3
4,335,257	-				+0.5
4,335,424	+				+0.1
4,335,424	+				+0.7
4,335,424	+				-0.1
4,335,425	-				+0.9
4,335,425	-				-0.3
4,335,425	-				-1.4
4,335,425	-				+1.1
4,335,425	-				+0.4
4,335,425	-				+1.0
4,335,425	-				-0.8
4,335,425	-				+1.4
4,335,425	-				+0.1
4,335,426	+				+1.6
4,335,466	+				+0.7
4,335,466	+				-0.3
4,335,485	+				+0.2
4,335,486	-				-0.8
4,335,486	-				+1.6
4,335,540	+		DZA65_RS20040	0.10	-0.7