Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19690 and DZA65_RS19695 are separated by 27 nucleotides DZA65_RS19695 and DZA65_RS19700 overlap by 4 nucleotides DZA65_RS19700 and DZA65_RS19705 overlap by 4 nucleotides
DZA65_RS19690: DZA65_RS19690 - DNA mismatch repair endonuclease MutL, at 4,262,596 to 4,264,524
_RS19690
DZA65_RS19695: DZA65_RS19695 - N-acetylmuramoyl-L-alanine amidase AmiB, at 4,264,552 to 4,266,225
_RS19695
DZA65_RS19700: DZA65_RS19700 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 4,266,222 to 4,266,704
_RS19700
DZA65_RS19705: DZA65_RS19705 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 4,266,701 to 4,268,242
_RS19705
Position (kb) 4264
4265
4266
4267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4263.560 kb on + strand, within DZA65_RS19690 at 4263.561 kb on - strand, within DZA65_RS19690 at 4263.561 kb on - strand, within DZA65_RS19690 at 4263.561 kb on - strand, within DZA65_RS19690 at 4263.561 kb on - strand, within DZA65_RS19690 at 4263.564 kb on + strand, within DZA65_RS19690 at 4263.565 kb on - strand, within DZA65_RS19690 at 4263.565 kb on - strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.619 kb on + strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.620 kb on - strand, within DZA65_RS19690 at 4263.656 kb on + strand, within DZA65_RS19690 at 4263.656 kb on + strand, within DZA65_RS19690 at 4263.657 kb on - strand, within DZA65_RS19690 at 4263.657 kb on - strand, within DZA65_RS19690 at 4263.657 kb on - strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.665 kb on + strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.666 kb on - strand, within DZA65_RS19690 at 4263.702 kb on - strand, within DZA65_RS19690 at 4263.702 kb on - strand, within DZA65_RS19690 at 4263.758 kb on + strand, within DZA65_RS19690 at 4263.758 kb on + strand, within DZA65_RS19690 at 4263.758 kb on + strand, within DZA65_RS19690 at 4263.758 kb on + strand, within DZA65_RS19690 at 4263.758 kb on + strand, within DZA65_RS19690 at 4263.759 kb on - strand, within DZA65_RS19690 at 4263.759 kb on - strand, within DZA65_RS19690 at 4263.759 kb on - strand, within DZA65_RS19690 at 4263.764 kb on + strand, within DZA65_RS19690 at 4263.764 kb on + strand, within DZA65_RS19690 at 4263.764 kb on + strand, within DZA65_RS19690 at 4263.764 kb on + strand, within DZA65_RS19690 at 4263.764 kb on + strand, within DZA65_RS19690 at 4263.765 kb on - strand, within DZA65_RS19690 at 4263.765 kb on - strand, within DZA65_RS19690 at 4263.765 kb on - strand, within DZA65_RS19690 at 4263.945 kb on + strand, within DZA65_RS19690 at 4263.946 kb on - strand, within DZA65_RS19690 at 4263.946 kb on - strand, within DZA65_RS19690 at 4264.070 kb on + strand, within DZA65_RS19690 at 4264.070 kb on + strand, within DZA65_RS19690 at 4264.070 kb on + strand, within DZA65_RS19690 at 4264.071 kb on - strand, within DZA65_RS19690 at 4264.154 kb on + strand, within DZA65_RS19690 at 4264.154 kb on + strand, within DZA65_RS19690 at 4264.154 kb on + strand, within DZA65_RS19690 at 4264.154 kb on + strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.155 kb on - strand, within DZA65_RS19690 at 4264.199 kb on - strand, within DZA65_RS19690 at 4264.228 kb on + strand, within DZA65_RS19690 at 4264.624 kb on - strand at 4264.624 kb on - strand at 4264.636 kb on + strand at 4264.636 kb on + strand at 4264.636 kb on + strand at 4264.637 kb on - strand at 4264.643 kb on + strand at 4264.644 kb on - strand at 4264.644 kb on - strand at 4264.694 kb on - strand at 4264.694 kb on - strand at 4264.694 kb on - strand at 4264.780 kb on + strand, within DZA65_RS19695 at 4264.863 kb on + strand, within DZA65_RS19695 at 4264.875 kb on - strand at 4264.875 kb on - strand, within DZA65_RS19695 at 4264.875 kb on - strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.917 kb on + strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.918 kb on - strand, within DZA65_RS19695 at 4264.924 kb on + strand, within DZA65_RS19695 at 4264.924 kb on + strand, within DZA65_RS19695 at 4264.924 kb on + strand, within DZA65_RS19695 at 4264.925 kb on - strand, within DZA65_RS19695 at 4265.016 kb on + strand, within DZA65_RS19695 at 4265.023 kb on + strand, within DZA65_RS19695 at 4265.042 kb on + strand, within DZA65_RS19695 at 4265.042 kb on + strand, within DZA65_RS19695 at 4265.042 kb on + strand, within DZA65_RS19695 at 4266.688 kb on - strand at 4266.737 kb on + strand at 4266.738 kb on - strand at 4266.738 kb on - strand at 4266.738 kb on - strand at 4266.738 kb on - strand at 4266.738 kb on - strand at 4266.738 kb on - strand at 4266.741 kb on + strand at 4266.741 kb on + strand at 4266.742 kb on - strand at 4266.742 kb on - strand at 4266.742 kb on - strand at 4266.753 kb on - strand at 4266.856 kb on - strand, within DZA65_RS19705 at 4266.998 kb on + strand, within DZA65_RS19705 at 4266.999 kb on - strand, within DZA65_RS19705 at 4266.999 kb on - strand, within DZA65_RS19705 at 4266.999 kb on - strand, within DZA65_RS19705 at 4267.017 kb on + strand, within DZA65_RS19705 at 4267.046 kb on + strand, within DZA65_RS19705 at 4267.046 kb on + strand, within DZA65_RS19705 at 4267.046 kb on + strand, within DZA65_RS19705 at 4267.046 kb on + strand, within DZA65_RS19705 at 4267.047 kb on - strand, within DZA65_RS19705 at 4267.047 kb on - strand, within DZA65_RS19705 at 4267.135 kb on + strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.136 kb on - strand, within DZA65_RS19705 at 4267.179 kb on - strand, within DZA65_RS19705
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,263,560 + DZA65_RS19690 0.50 +0.9 4,263,561 - DZA65_RS19690 0.50 +0.0 4,263,561 - DZA65_RS19690 0.50 -1.5 4,263,561 - DZA65_RS19690 0.50 -0.4 4,263,561 - DZA65_RS19690 0.50 +1.3 4,263,564 + DZA65_RS19690 0.50 +1.9 4,263,565 - DZA65_RS19690 0.50 +0.9 4,263,565 - DZA65_RS19690 0.50 -0.5 4,263,619 + DZA65_RS19690 0.53 -0.2 4,263,619 + DZA65_RS19690 0.53 +0.3 4,263,619 + DZA65_RS19690 0.53 -0.7 4,263,619 + DZA65_RS19690 0.53 -1.1 4,263,619 + DZA65_RS19690 0.53 -0.8 4,263,619 + DZA65_RS19690 0.53 -0.4 4,263,619 + DZA65_RS19690 0.53 -0.3 4,263,619 + DZA65_RS19690 0.53 +0.2 4,263,619 + DZA65_RS19690 0.53 +0.1 4,263,619 + DZA65_RS19690 0.53 -0.5 4,263,619 + DZA65_RS19690 0.53 -2.8 4,263,619 + DZA65_RS19690 0.53 -1.5 4,263,620 - DZA65_RS19690 0.53 -0.3 4,263,620 - DZA65_RS19690 0.53 +0.9 4,263,620 - DZA65_RS19690 0.53 -0.0 4,263,620 - DZA65_RS19690 0.53 -1.5 4,263,620 - DZA65_RS19690 0.53 -0.6 4,263,620 - DZA65_RS19690 0.53 -0.1 4,263,620 - DZA65_RS19690 0.53 -0.3 4,263,656 + DZA65_RS19690 0.55 -1.7 4,263,656 + DZA65_RS19690 0.55 +0.9 4,263,657 - DZA65_RS19690 0.55 +0.4 4,263,657 - DZA65_RS19690 0.55 +1.9 4,263,657 - DZA65_RS19690 0.55 +0.2 4,263,665 + DZA65_RS19690 0.55 +0.1 4,263,665 + DZA65_RS19690 0.55 +0.0 4,263,665 + DZA65_RS19690 0.55 +2.1 4,263,665 + DZA65_RS19690 0.55 -1.4 4,263,665 + DZA65_RS19690 0.55 -0.1 4,263,665 + DZA65_RS19690 0.55 +1.0 4,263,665 + DZA65_RS19690 0.55 -1.1 4,263,665 + DZA65_RS19690 0.55 +1.4 4,263,665 + DZA65_RS19690 0.55 -0.5 4,263,665 + DZA65_RS19690 0.55 -0.5 4,263,665 + DZA65_RS19690 0.55 -1.9 4,263,666 - DZA65_RS19690 0.55 +0.6 4,263,666 - DZA65_RS19690 0.55 +0.2 4,263,666 - DZA65_RS19690 0.55 -0.1 4,263,666 - DZA65_RS19690 0.55 +0.3 4,263,666 - DZA65_RS19690 0.55 +0.2 4,263,666 - DZA65_RS19690 0.55 +0.0 4,263,666 - DZA65_RS19690 0.55 +0.6 4,263,666 - DZA65_RS19690 0.55 -1.7 4,263,666 - DZA65_RS19690 0.55 -0.2 4,263,666 - DZA65_RS19690 0.55 +0.2 4,263,666 - DZA65_RS19690 0.55 +0.3 4,263,702 - DZA65_RS19690 0.57 -0.1 4,263,702 - DZA65_RS19690 0.57 +0.9 4,263,758 + DZA65_RS19690 0.60 +0.1 4,263,758 + DZA65_RS19690 0.60 -0.6 4,263,758 + DZA65_RS19690 0.60 -2.8 4,263,758 + DZA65_RS19690 0.60 -0.4 4,263,758 + DZA65_RS19690 0.60 +0.6 4,263,759 - DZA65_RS19690 0.60 +0.7 4,263,759 - DZA65_RS19690 0.60 -1.3 4,263,759 - DZA65_RS19690 0.60 +1.4 4,263,764 + DZA65_RS19690 0.61 -0.5 4,263,764 + DZA65_RS19690 0.61 +0.6 4,263,764 + DZA65_RS19690 0.61 +0.9 4,263,764 + DZA65_RS19690 0.61 +1.3 4,263,764 + DZA65_RS19690 0.61 +0.9 4,263,765 - DZA65_RS19690 0.61 -0.4 4,263,765 - DZA65_RS19690 0.61 +1.0 4,263,765 - DZA65_RS19690 0.61 +1.3 4,263,945 + DZA65_RS19690 0.70 -1.0 4,263,946 - DZA65_RS19690 0.70 -0.4 4,263,946 - DZA65_RS19690 0.70 -1.1 4,264,070 + DZA65_RS19690 0.76 +0.7 4,264,070 + DZA65_RS19690 0.76 +0.3 4,264,070 + DZA65_RS19690 0.76 -0.9 4,264,071 - DZA65_RS19690 0.76 -0.3 4,264,154 + DZA65_RS19690 0.81 -1.0 4,264,154 + DZA65_RS19690 0.81 +1.1 4,264,154 + DZA65_RS19690 0.81 +1.4 4,264,154 + DZA65_RS19690 0.81 -1.0 4,264,155 - DZA65_RS19690 0.81 +0.9 4,264,155 - DZA65_RS19690 0.81 +1.1 4,264,155 - DZA65_RS19690 0.81 -0.7 4,264,155 - DZA65_RS19690 0.81 -0.4 4,264,155 - DZA65_RS19690 0.81 +2.2 4,264,155 - DZA65_RS19690 0.81 +0.4 4,264,199 - DZA65_RS19690 0.83 +2.0 4,264,228 + DZA65_RS19690 0.85 -1.5 4,264,624 - -1.2 4,264,624 - +0.0 4,264,636 + +0.1 4,264,636 + -1.1 4,264,636 + -0.1 4,264,637 - +0.0 4,264,643 + -1.1 4,264,644 - +1.3 4,264,644 - +0.3 4,264,694 - -0.1 4,264,694 - +0.7 4,264,694 - -2.1 4,264,780 + DZA65_RS19695 0.14 -1.6 4,264,863 + DZA65_RS19695 0.19 +0.0 4,264,875 - +0.3 4,264,875 - DZA65_RS19695 0.19 -0.1 4,264,875 - DZA65_RS19695 0.19 -1.5 4,264,917 + DZA65_RS19695 0.22 -0.1 4,264,917 + DZA65_RS19695 0.22 -1.7 4,264,917 + DZA65_RS19695 0.22 -0.3 4,264,917 + DZA65_RS19695 0.22 -0.5 4,264,917 + DZA65_RS19695 0.22 -0.5 4,264,917 + DZA65_RS19695 0.22 +0.9 4,264,918 - DZA65_RS19695 0.22 -0.2 4,264,918 - DZA65_RS19695 0.22 -0.1 4,264,918 - DZA65_RS19695 0.22 +0.3 4,264,918 - DZA65_RS19695 0.22 -0.9 4,264,918 - DZA65_RS19695 0.22 -0.1 4,264,918 - DZA65_RS19695 0.22 -0.9 4,264,918 - DZA65_RS19695 0.22 +0.4 4,264,918 - DZA65_RS19695 0.22 -2.0 4,264,918 - DZA65_RS19695 0.22 -1.2 4,264,918 - DZA65_RS19695 0.22 -0.9 4,264,924 + DZA65_RS19695 0.22 +0.6 4,264,924 + DZA65_RS19695 0.22 -1.0 4,264,924 + DZA65_RS19695 0.22 -0.5 4,264,925 - DZA65_RS19695 0.22 -0.7 4,265,016 + DZA65_RS19695 0.28 -1.3 4,265,023 + DZA65_RS19695 0.28 +0.6 4,265,042 + DZA65_RS19695 0.29 +1.0 4,265,042 + DZA65_RS19695 0.29 -1.7 4,265,042 + DZA65_RS19695 0.29 +1.6 4,266,688 - +0.9 4,266,737 + -2.5 4,266,738 - +0.4 4,266,738 - +1.0 4,266,738 - -0.4 4,266,738 - -1.0 4,266,738 - -0.5 4,266,738 - -1.7 4,266,741 + -0.7 4,266,741 + -0.7 4,266,742 - +0.3 4,266,742 - -0.3 4,266,742 - -1.1 4,266,753 - -0.7 4,266,856 - DZA65_RS19705 0.10 -1.4 4,266,998 + DZA65_RS19705 0.19 +0.5 4,266,999 - DZA65_RS19705 0.19 +1.3 4,266,999 - DZA65_RS19705 0.19 -0.5 4,266,999 - DZA65_RS19705 0.19 -0.1 4,267,017 + DZA65_RS19705 0.20 -0.7 4,267,046 + DZA65_RS19705 0.22 +0.4 4,267,046 + DZA65_RS19705 0.22 -1.7 4,267,046 + DZA65_RS19705 0.22 +0.5 4,267,046 + DZA65_RS19705 0.22 +0.1 4,267,047 - DZA65_RS19705 0.22 +1.2 4,267,047 - DZA65_RS19705 0.22 -0.6 4,267,135 + DZA65_RS19705 0.28 -0.5 4,267,136 - DZA65_RS19705 0.28 +0.4 4,267,136 - DZA65_RS19705 0.28 +0.3 4,267,136 - DZA65_RS19705 0.28 +1.1 4,267,136 - DZA65_RS19705 0.28 +0.9 4,267,136 - DZA65_RS19705 0.28 -0.7 4,267,136 - DZA65_RS19705 0.28 -0.6 4,267,136 - DZA65_RS19705 0.28 -1.5 4,267,136 - DZA65_RS19705 0.28 -0.9 4,267,179 - DZA65_RS19705 0.31 +0.2
Or see this region's nucleotide sequence