Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19520

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,222,945	-		DZA65_RS19510	0.41	+1.1
4,222,983	+		DZA65_RS19510	0.46	+0.8
4,222,983	+		DZA65_RS19510	0.46	+1.1
4,222,984	-		DZA65_RS19510	0.47	+0.1
4,222,984	-		DZA65_RS19510	0.47	+0.1
4,223,176	-		DZA65_RS19510	0.76	-0.0
4,223,187	+		DZA65_RS19510	0.78	+0.4
4,223,188	-		DZA65_RS19510	0.78	+0.2
4,223,318	+				-0.5
4,223,318	+				+1.4
4,223,318	+				-0.0
4,223,318	+				-0.5
4,223,319	-				+0.8
4,223,319	-				+0.1
4,223,319	-				+1.0
4,223,319	-				+0.2
4,223,319	-				+1.0
4,223,319	-				-2.5
4,223,319	-				-0.2
4,223,319	-				+0.7
4,223,319	-				+1.2
4,223,319	-				+0.3
4,223,319	-				+0.8
4,223,320	+				+1.0
4,223,320	+				+0.8
4,223,320	+				-0.7
4,223,320	+				-0.9
4,223,320	+				+2.9
4,223,320	+				+0.3
4,223,320	+				+0.0
4,223,320	+				+0.3
4,223,321	-				+0.2
4,223,321	-				-0.9
4,223,321	-				-0.0
4,223,321	-				+0.9
4,223,321	-				+1.0
4,223,321	-				+0.0
4,223,326	+				-1.3
4,223,326	+				-1.5
4,223,327	-				+0.0
4,223,347	+				-0.8
4,223,347	+				+0.3
4,223,348	-				-0.2
4,223,348	-				+2.2
4,223,348	-				+0.1
4,223,348	-				+0.8
4,223,348	-				-2.2
4,223,348	-				+1.0
4,223,348	-				-0.5
4,223,361	-				+0.2
4,223,364	+				+0.4
4,223,364	+				+0.7
4,223,364	+				+0.8
4,223,364	+				+0.6
4,223,364	+				-1.3
4,223,365	-				+0.0
4,223,365	-				+0.6
4,223,365	-				-1.0
4,223,365	-				-0.7
4,223,372	-				+0.3
4,223,372	-				+0.1
4,223,372	-				-1.6
4,223,382	+				+0.7
4,223,382	+				-0.5
4,223,382	+				-0.0
4,223,382	+				+1.2
4,223,382	+				+0.3
4,223,383	-				+1.0
4,223,383	-				-0.0
4,223,383	-				+1.5
4,223,383	-				+0.8
4,223,383	-				-0.8
4,223,383	-				-0.2
4,223,383	-				-1.2
4,223,383	-				+0.2
4,223,383	-				+0.5
4,223,383	-				+0.3
4,223,383	-				-0.9
4,223,386	+				+1.5
4,223,386	+				+0.1
4,223,386	+				+1.4
4,223,386	+				-1.2
4,223,386	+				-1.0
4,223,386	+				+0.5
4,223,386	+				-0.2
4,223,387	-				-0.2
4,223,387	-				-0.3
4,223,387	-				+1.5
4,223,387	-				-0.9
4,223,387	-				+0.6
4,223,387	-				+0.8
4,223,403	+				+0.2
4,223,404	-				-0.1
4,223,404	-				-1.3
4,223,425	-				-0.4
4,223,438	+		DZA65_RS19515	0.10	+0.6
4,223,438	+		DZA65_RS19515	0.10	+1.3
4,223,438	+		DZA65_RS19515	0.10	+0.1
4,223,466	+		DZA65_RS19515	0.15	-2.2
4,223,466	+		DZA65_RS19515	0.15	+0.4
4,223,467	-		DZA65_RS19515	0.16	-0.7
4,223,467	-		DZA65_RS19515	0.16	+0.2
4,223,467	-		DZA65_RS19515	0.16	-0.2
4,223,467	-		DZA65_RS19515	0.16	-0.7
4,223,467	-		DZA65_RS19515	0.16	-0.0
4,223,492	+		DZA65_RS19515	0.20	+0.6
4,223,492	+		DZA65_RS19515	0.20	+1.2
4,223,493	-		DZA65_RS19515	0.20	+0.1
4,223,493	-		DZA65_RS19515	0.20	+0.5
4,223,519	+		DZA65_RS19515	0.25	-0.0
4,223,519	+		DZA65_RS19515	0.25	+0.2
4,223,519	+		DZA65_RS19515	0.25	-0.2
4,223,520	-		DZA65_RS19515	0.25	-1.2
4,223,520	-		DZA65_RS19515	0.25	+0.1
4,223,520	-		DZA65_RS19515	0.25	-0.7
4,223,520	-		DZA65_RS19515	0.25	-1.3
4,223,520	-		DZA65_RS19515	0.25	-1.9
4,223,600	+		DZA65_RS19515	0.40	+0.1
4,223,696	+		DZA65_RS19515	0.58	-2.5
4,223,808	-		DZA65_RS19515	0.79	-0.2
4,223,842	+		DZA65_RS19515	0.85	+0.4
4,223,842	+		DZA65_RS19515	0.85	-0.3
4,223,842	+		DZA65_RS19515	0.85	+1.0
4,223,842	+		DZA65_RS19515	0.85	+0.0
4,223,842	+		DZA65_RS19515	0.85	+0.8
4,223,842	+		DZA65_RS19515	0.85	-0.9
4,223,843	-		DZA65_RS19515	0.85	+0.1
4,223,843	-		DZA65_RS19515	0.85	+1.0
4,223,843	-		DZA65_RS19515	0.85	+0.2
4,223,843	-		DZA65_RS19515	0.85	+1.1
4,223,843	-		DZA65_RS19515	0.85	+0.8
4,223,843	-		DZA65_RS19515	0.85	+0.2
4,223,843	-		DZA65_RS19515	0.85	+0.2
4,223,843	-		DZA65_RS19515	0.85	-0.2
4,223,843	-		DZA65_RS19515	0.85	+1.2
4,223,843	-		DZA65_RS19515	0.85	-0.5
4,223,843	-				-0.2
4,223,843	-		DZA65_RS19515	0.85	+0.6
4,223,843	-		DZA65_RS19515	0.85	+0.4
4,223,846	-		DZA65_RS19515	0.86	+2.4
4,223,846	-		DZA65_RS19515	0.86	-0.1
4,223,880	+				+0.2
4,223,890	+				+0.6
4,223,908	-				+0.8
4,223,945	+				-0.2
4,223,945	+				-0.4
4,223,956	-				+1.6
4,224,099	-		DZA65_RS19520	0.49	-0.5
4,224,101	+		DZA65_RS19520	0.49	+0.0
4,224,101	+		DZA65_RS19520	0.49	-0.2
4,224,102	-		DZA65_RS19520	0.50	-1.0
4,224,102	-		DZA65_RS19520	0.50	+0.1
4,224,102	-		DZA65_RS19520	0.50	-0.7
4,224,102	-		DZA65_RS19520	0.50	-1.0
4,224,102	-		DZA65_RS19520	0.50	-0.6
4,224,102	-		DZA65_RS19520	0.50	-1.2
4,224,240	+				-1.3
4,224,269	+				-0.8
4,224,309	+				-0.8
4,224,309	+				-0.5
4,224,309	+				+0.8
4,224,309	+				-0.2
4,224,310	-				-0.1
4,224,310	-				-0.4
4,224,312	+				-0.5
4,224,312	+				+1.5
4,224,358	+				-0.8
4,224,372	+				-0.3
4,224,372	+				+0.5
4,224,373	-				+0.3
4,224,373	-				-2.2
4,224,373	-				-0.3
4,224,432	+				-0.4
4,224,432	+				-0.7
4,224,432	+				+0.8
4,224,432	+				-1.3
4,224,432	+				+0.6
4,224,432	+				+0.4
4,224,432	+				+3.3
4,224,433	-				+0.8
4,224,433	-				-0.8
4,224,433	-				-0.3
4,224,433	-				-0.3
4,224,433	-				+0.4
4,224,433	-				+1.5
4,224,433	-				+0.1
4,224,436	+				-1.8
4,224,436	+				-2.0
4,224,436	+				+0.2
4,224,436	+				-2.5
4,224,436	+				-0.8
4,224,436	+				-0.5
4,224,436	+				-1.5
4,224,436	+				-1.2
4,224,436	+				+0.1
4,224,436	+				+0.4
4,224,436	+				-0.6
4,224,436	+				+0.5
4,224,436	+				+0.3
4,224,437	-				+0.8
4,224,437	-				-1.5
4,224,437	-				-0.2
4,224,437	-				+0.6
4,224,437	-				+0.4
4,224,437	-				-2.0
4,224,439	+				+0.0
4,224,439	+				+1.8
4,224,440	-				+1.1
4,224,440	-				+0.8
4,224,440	-				+2.4
4,224,539	+				+0.2
4,224,540	-				-2.3
4,224,556	+				-2.0
4,224,556	+				+1.4
4,224,556	+				+0.5
4,224,556	+				-0.0
4,224,556	+				+1.0
4,224,556	+				+0.1
4,224,557	-				-1.6
4,224,557	-				+1.4
4,224,557	-				-0.5
4,224,557	-				+1.2
4,224,557	-				+0.8
4,224,557	-				-1.7
4,224,557	-				+0.1
4,224,557	-				-0.8
4,224,557	-				+0.5
4,224,557	-				-0.2
4,224,557	-				-1.8
4,224,557	-				-2.8
4,224,557	-				+0.4
4,224,557	-				-0.8
4,224,557	-				-0.5
4,224,557	-				-0.2
4,224,564	+				+0.3
4,224,565	-				+0.2
4,224,565	-				-0.1
4,224,577	+				+0.6
4,224,577	+				+0.4
4,224,577	+				-0.8
4,224,577	+				+0.3
4,224,578	-				+2.1
4,224,578	-				+0.1
4,224,656	+				+0.2
4,224,656	+				-0.6
4,224,656	+				-2.2
4,224,656	+				+1.2
4,224,657	-				-0.7
4,224,657	-				-1.1
4,224,657	-				-0.1
4,224,657	-				-2.2
4,224,682	+		DZA65_RS19525	0.11	+0.4
4,224,724	+		DZA65_RS19525	0.13	-1.8
4,224,724	+		DZA65_RS19525	0.13	+1.7
4,224,730	+		DZA65_RS19525	0.13	+0.8
4,224,730	+		DZA65_RS19525	0.13	+2.1
4,224,730	+		DZA65_RS19525	0.13	+0.2
4,224,730	+		DZA65_RS19525	0.13	+0.5
4,224,730	+		DZA65_RS19525	0.13	+1.3
4,224,730	+				-0.2
4,224,730	+		DZA65_RS19525	0.13	-0.2
4,224,731	-		DZA65_RS19525	0.13	+1.2
4,224,731	-		DZA65_RS19525	0.13	+1.7
4,224,731	-		DZA65_RS19525	0.13	+0.3
4,224,731	-		DZA65_RS19525	0.13	-1.8
4,224,731	-		DZA65_RS19525	0.13	+0.2
4,224,731	-		DZA65_RS19525	0.13	+1.8
4,224,731	-		DZA65_RS19525	0.13	-0.8
4,224,731	-		DZA65_RS19525	0.13	+0.4
4,224,731	-		DZA65_RS19525	0.13	-0.4
4,224,740	-		DZA65_RS19525	0.14	-1.1
4,224,740	-		DZA65_RS19525	0.14	+0.8
4,224,740	-		DZA65_RS19525	0.14	-0.4
4,224,740	-		DZA65_RS19525	0.14	+0.5
4,224,740	-		DZA65_RS19525	0.14	+1.8
4,224,740	-		DZA65_RS19525	0.14	+0.8
4,224,740	-		DZA65_RS19525	0.14	+0.5
4,224,758	+		DZA65_RS19525	0.15	+0.1
4,224,759	-		DZA65_RS19525	0.15	-0.4
4,224,759	-		DZA65_RS19525	0.15	-0.6
4,224,759	-		DZA65_RS19525	0.15	-1.3
4,224,794	+		DZA65_RS19525	0.16	+0.6
4,224,794	+		DZA65_RS19525	0.16	+0.8
4,224,794	+		DZA65_RS19525	0.16	-0.3
4,224,794	+		DZA65_RS19525	0.16	+1.3
4,224,794	+		DZA65_RS19525	0.16	-0.2
4,224,794	+		DZA65_RS19525	0.16	-1.0
4,224,794	+		DZA65_RS19525	0.16	-0.1
4,224,795	-		DZA65_RS19525	0.16	-1.0
4,224,795	-		DZA65_RS19525	0.16	+0.9
4,224,795	-		DZA65_RS19525	0.16	-0.2
4,224,795	-		DZA65_RS19525	0.16	+0.8
4,224,796	+		DZA65_RS19525	0.17	+1.2
4,224,796	+		DZA65_RS19525	0.17	-1.5
4,224,796	+		DZA65_RS19525	0.17	-0.3
4,224,796	+		DZA65_RS19525	0.17	-0.8
4,224,796	+		DZA65_RS19525	0.17	+0.4
4,224,797	-		DZA65_RS19525	0.17	-0.4
4,224,797	-		DZA65_RS19525	0.17	-0.1
4,224,797	-		DZA65_RS19525	0.17	-0.5
4,224,797	-		DZA65_RS19525	0.17	+1.0
4,224,809	+		DZA65_RS19525	0.17	-0.2
4,224,809	+		DZA65_RS19525	0.17	-1.4
4,224,810	-		DZA65_RS19525	0.17	+0.1
4,224,810	-		DZA65_RS19525	0.17	-1.3
4,224,810	-		DZA65_RS19525	0.17	+0.2
4,224,810	-		DZA65_RS19525	0.17	-0.6
4,224,923	+		DZA65_RS19525	0.23	-1.3
4,224,924	-		DZA65_RS19525	0.23	+1.4
4,224,928	+		DZA65_RS19525	0.23	-0.3
4,224,928	+		DZA65_RS19525	0.23	-0.4
4,224,928	+		DZA65_RS19525	0.23	+0.2
4,224,928	+		DZA65_RS19525	0.23	-0.1
4,224,928	+		DZA65_RS19525	0.23	-0.2
4,224,928	+		DZA65_RS19525	0.23	+0.0
4,224,928	+		DZA65_RS19525	0.23	-1.2
4,224,928	+		DZA65_RS19525	0.23	-1.8
4,224,928	+		DZA65_RS19525	0.23	-0.1
4,224,929	-		DZA65_RS19525	0.23	-0.4
4,224,929	-		DZA65_RS19525	0.23	+1.3
4,224,929	-		DZA65_RS19525	0.23	-0.5
4,224,929	-		DZA65_RS19525	0.23	-0.2
4,224,929	-		DZA65_RS19525	0.23	+0.3
4,224,929	-		DZA65_RS19525	0.23	-0.5
4,224,929	-		DZA65_RS19525	0.23	+0.8
4,224,929	-		DZA65_RS19525	0.23	-1.4
4,224,929	-		DZA65_RS19525	0.23	+1.4
4,224,938	+		DZA65_RS19525	0.24	+0.7
4,224,938	+		DZA65_RS19525	0.24	-0.8
4,225,051	+		DZA65_RS19525	0.30	+1.8
4,225,051	+		DZA65_RS19525	0.30	-0.0
4,225,051	+		DZA65_RS19525	0.30	-0.8
4,225,052	-		DZA65_RS19525	0.30	-0.6
4,225,229	+		DZA65_RS19525	0.39	+1.4
4,225,229	+		DZA65_RS19525	0.39	-1.8
4,225,230	-		DZA65_RS19525	0.39	-1.6
4,225,230	-				-0.2
4,225,243	+		DZA65_RS19525	0.40	-1.9
4,225,244	-		DZA65_RS19525	0.40	-1.6