Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19455

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,208,350	-				+0.1
4,208,350	-				-0.2
4,208,350	-				+0.2
4,208,350	-				+0.1
4,208,350	-				+0.4
4,208,350	-				-0.4
4,208,353	-				-0.6
4,208,353	-				-0.5
4,208,353	-				-1.5
4,208,353	-				-1.3
4,208,353	-				-0.0
4,208,425	+				+1.0
4,208,425	+				+1.8
4,208,425	+				-0.9
4,208,425	+				+0.8
4,208,426	-				-1.9
4,208,426	-				+1.0
4,208,500	+				-0.1
4,208,501	-				+0.8
4,208,511	+				+0.0
4,208,521	+				-0.2
4,208,521	+				+0.3
4,208,541	+				-0.6
4,208,541	+				-0.6
4,208,541	+				+1.1
4,208,541	+				+0.1
4,208,541	+				+1.4
4,208,541	+				+0.2
4,208,542	-				+0.3
4,208,610	+				+0.6
4,208,610	+				+0.1
4,208,611	-				+0.3
4,208,642	+				+0.8
4,208,643	-				+1.4
4,208,659	+				-0.8
4,208,660	-				-1.5
4,208,673	+				-0.8
4,208,673	+				-1.2
4,208,673	+				+0.2
4,208,673	+				-1.8
4,208,673	+				+0.4
4,208,673	+				+0.3
4,208,673	+				-0.0
4,208,673	+				+0.5
4,208,673	+				+0.2
4,208,673	+				+1.2
4,208,673	+				-1.2
4,208,673	+				+0.1
4,208,673	+				+1.3
4,208,673	+				-0.2
4,208,673	+				-0.2
4,208,673	+				+0.7
4,208,673	+				+1.1
4,208,673	+				-0.3
4,208,673	+				+1.6
4,208,673	+				+0.5
4,208,673	+				-0.2
4,208,673	+				-0.4
4,208,673	+				-0.6
4,208,673	+				+2.8
4,208,673	+				+1.8
4,208,673	+				-1.8
4,208,673	+				+0.5
4,208,673	+				+0.2
4,208,673	+				-0.2
4,208,673	+				+0.2
4,208,673	+				-1.2
4,208,673	+				+0.7
4,208,673	+				-1.1
4,208,674	-				-0.8
4,208,674	-				-1.2
4,208,674	-				-0.7
4,208,674	-				-0.4
4,208,674	-				+1.1
4,208,674	-				+0.5
4,208,674	-				+0.2
4,208,674	-				-0.2
4,208,674	-				-0.7
4,208,674	-				+1.8
4,208,674	-				-0.4
4,208,674	-				+2.1
4,208,674	-				+0.9
4,208,674	-				-1.8
4,208,674	-				-0.6
4,208,674	-				-1.5
4,208,674	-				+0.5
4,208,674	-				-0.8
4,208,674	-				+0.4
4,208,674	-				+0.1
4,208,674	-				-1.5
4,208,784	+		DZA65_RS19450	0.19	+0.4
4,208,785	-		DZA65_RS19450	0.19	+0.0
4,208,806	+		DZA65_RS19450	0.23	-1.8
4,208,807	-		DZA65_RS19450	0.23	+0.5
4,208,807	-		DZA65_RS19450	0.23	+0.2
4,208,845	+		DZA65_RS19450	0.30	-0.6
4,208,845	+		DZA65_RS19450	0.30	+0.1
4,208,845	+		DZA65_RS19450	0.30	-0.7
4,208,845	+		DZA65_RS19450	0.30	+0.2
4,208,846	-		DZA65_RS19450	0.30	-2.4
4,208,846	-		DZA65_RS19450	0.30	-0.3
4,208,847	+		DZA65_RS19450	0.30	+0.5
4,208,847	+		DZA65_RS19450	0.30	+0.5
4,208,847	+		DZA65_RS19450	0.30	-2.0
4,208,847	+		DZA65_RS19450	0.30	+0.5
4,208,847	+		DZA65_RS19450	0.30	-0.4
4,208,847	+		DZA65_RS19450	0.30	+0.1
4,208,847	+		DZA65_RS19450	0.30	-2.4
4,208,847	+		DZA65_RS19450	0.30	+1.6
4,208,847	+		DZA65_RS19450	0.30	+0.3
4,208,847	+		DZA65_RS19450	0.30	-0.2
4,208,848	-		DZA65_RS19450	0.30	+0.5
4,208,848	-		DZA65_RS19450	0.30	+0.5
4,208,848	-		DZA65_RS19450	0.30	-0.7
4,208,848	-		DZA65_RS19450	0.30	-0.5
4,208,848	-		DZA65_RS19450	0.30	-0.4
4,208,848	-		DZA65_RS19450	0.30	+0.5
4,208,848	-		DZA65_RS19450	0.30	+1.0
4,208,880	+		DZA65_RS19450	0.36	-0.2
4,208,880	+		DZA65_RS19450	0.36	+0.3
4,208,880	+		DZA65_RS19450	0.36	+1.2
4,208,880	+				+0.8
4,208,880	+		DZA65_RS19450	0.36	+0.7
4,208,880	+		DZA65_RS19450	0.36	+0.5
4,208,880	+		DZA65_RS19450	0.36	-1.1
4,208,880	+		DZA65_RS19450	0.36	+0.3
4,208,881	-		DZA65_RS19450	0.36	-0.2
4,208,881	-		DZA65_RS19450	0.36	+0.9
4,208,887	+		DZA65_RS19450	0.37	-0.8
4,209,136	+		DZA65_RS19450	0.81	-1.5
4,209,137	-		DZA65_RS19450	0.81	+0.2
4,209,147	+		DZA65_RS19450	0.83	-0.4
4,209,147	+		DZA65_RS19450	0.83	-0.5
4,209,147	+		DZA65_RS19450	0.83	-2.0
4,209,148	-		DZA65_RS19450	0.83	-0.2
4,209,148	-		DZA65_RS19450	0.83	-0.3
4,209,165	+		DZA65_RS19450	0.86	-0.2
4,209,165	+		DZA65_RS19450	0.86	+0.2
4,209,169	+		DZA65_RS19450	0.86	-0.4
4,209,169	+		DZA65_RS19450	0.86	-0.3
4,209,169	+		DZA65_RS19450	0.86	+0.4
4,209,169	+		DZA65_RS19450	0.86	-0.7
4,209,169	+		DZA65_RS19450	0.86	+0.9
4,209,169	+		DZA65_RS19450	0.86	-0.8
4,209,169	+		DZA65_RS19450	0.86	-0.4
4,209,169	+		DZA65_RS19450	0.86	+0.8
4,209,169	+		DZA65_RS19450	0.86	-0.0
4,209,169	+		DZA65_RS19450	0.86	-1.0
4,209,169	+		DZA65_RS19450	0.86	+1.2
4,209,169	+		DZA65_RS19450	0.86	-0.5
4,209,169	+		DZA65_RS19450	0.86	-0.6
4,209,169	+		DZA65_RS19450	0.86	+0.3
4,209,169	+		DZA65_RS19450	0.86	-0.8
4,209,169	+		DZA65_RS19450	0.86	+0.5
4,209,170	-		DZA65_RS19450	0.87	-1.2
4,209,170	-		DZA65_RS19450	0.87	-0.4
4,209,170	-		DZA65_RS19450	0.87	+0.5
4,209,170	-		DZA65_RS19450	0.87	-1.0
4,209,170	-		DZA65_RS19450	0.87	+2.4
4,209,170	-		DZA65_RS19450	0.87	-1.3
4,209,170	-		DZA65_RS19450	0.87	-0.4
4,209,170	-		DZA65_RS19450	0.87	-0.4
4,209,170	-		DZA65_RS19450	0.87	-0.2
4,209,170	-		DZA65_RS19450	0.87	-0.0
4,209,170	-		DZA65_RS19450	0.87	-0.5
4,209,202	+				-0.4
4,209,203	-				-0.4
4,209,203	-				+1.2
4,209,203	-				-0.2
4,209,215	+				-0.8
4,209,216	-				-0.8
4,209,300	-				-0.2
4,209,343	+				+0.3
4,209,343	+				-0.2
4,209,343	+				+1.1
4,209,343	+				-0.7
4,209,343	+				-0.2
4,209,343	+				-0.7
4,209,343	+				-0.0
4,209,343	+				-1.3
4,209,343	+				-0.8
4,209,344	-				+0.6
4,209,344	-				+1.0
4,209,344	-				-1.8
4,209,344	-				-0.2
4,209,344	-				-0.2
4,209,344	-				-1.7
4,209,344	-				-0.2
4,209,344	-				+0.6
4,209,344	-				-0.1
4,209,344	-				+0.8
4,209,344	-				-0.1
4,209,398	+				+0.3
4,209,399	-				+0.1
4,209,399	-				-1.4
4,209,412	+				-1.4
4,209,413	-				+0.4
4,209,413	-				-0.5
4,209,454	+				-0.4
4,209,454	+				+0.9
4,209,454	+				-0.3
4,209,454	+				-0.8
4,209,454	+				-0.4
4,209,454	+				+2.0
4,209,454	+				-0.4
4,209,454	+				-0.3
4,209,454	+				-0.3
4,209,454	+				+1.4
4,209,454	+				+1.4
4,209,454	+				+1.1
4,209,454	+				+0.8
4,209,454	+				+0.4
4,209,454	+				+0.3
4,209,454	+				-0.5
4,209,454	+				+0.4
4,209,454	+				-0.2
4,209,454	+				-0.9
4,209,455	-				+0.3
4,209,455	-				+0.4
4,209,455	-				-0.1
4,209,455	-				-0.2
4,209,455	-				-1.5
4,209,455	-				+0.8
4,209,455	-				-1.5
4,209,455	-				-0.2
4,209,455	-				-0.8
4,209,455	-				-1.3
4,209,455	-				-1.8
4,209,529	+		DZA65_RS19455	0.14	-0.5
4,209,530	-		DZA65_RS19455	0.14	+0.8
4,209,530	-		DZA65_RS19455	0.14	+0.4
4,209,530	-		DZA65_RS19455	0.14	-0.5
4,209,530	-		DZA65_RS19455	0.14	-0.7
4,209,541	+		DZA65_RS19455	0.15	+0.1
4,209,541	+		DZA65_RS19455	0.15	-0.7
4,209,541	+		DZA65_RS19455	0.15	-0.0
4,209,541	+		DZA65_RS19455	0.15	-1.0
4,209,541	+		DZA65_RS19455	0.15	-1.5
4,209,541	+		DZA65_RS19455	0.15	-0.5
4,209,541	+		DZA65_RS19455	0.15	+0.1
4,209,542	-		DZA65_RS19455	0.15	-0.8
4,209,542	-		DZA65_RS19455	0.15	+1.1
4,209,542	-		DZA65_RS19455	0.15	-0.0
4,209,542	-		DZA65_RS19455	0.15	-0.9
4,209,598	+		DZA65_RS19455	0.19	+1.6
4,209,598	+		DZA65_RS19455	0.19	+0.1
4,209,598	+		DZA65_RS19455	0.19	-0.3
4,209,598	+		DZA65_RS19455	0.19	-0.3
4,209,643	+		DZA65_RS19455	0.23	-0.9
4,209,643	+		DZA65_RS19455	0.23	+0.4
4,209,643	+		DZA65_RS19455	0.23	-1.4
4,209,644	-		DZA65_RS19455	0.23	+0.3
4,209,644	-		DZA65_RS19455	0.23	-0.6
4,209,644	-		DZA65_RS19455	0.23	-0.1
4,209,644	-		DZA65_RS19455	0.23	+0.8
4,209,644	-		DZA65_RS19455	0.23	-0.1
4,209,651	-		DZA65_RS19455	0.23	-2.5
4,209,685	+		DZA65_RS19455	0.26	-0.2
4,209,685	+		DZA65_RS19455	0.26	+1.7
4,209,686	-		DZA65_RS19455	0.26	+0.5
4,209,776	+		DZA65_RS19455	0.33	-0.0
4,209,776	+		DZA65_RS19455	0.33	-0.4
4,209,776	+		DZA65_RS19455	0.33	+0.3
4,209,777	-		DZA65_RS19455	0.33	-0.5
4,209,777	-		DZA65_RS19455	0.33	-0.1
4,209,819	+		DZA65_RS19455	0.36	+2.3
4,209,819	+		DZA65_RS19455	0.36	-0.6
4,209,820	-		DZA65_RS19455	0.36	-0.9
4,209,820	-		DZA65_RS19455	0.36	-1.8
4,209,859	+		DZA65_RS19455	0.39	-1.4
4,209,859	+		DZA65_RS19455	0.39	+0.6
4,209,860	-		DZA65_RS19455	0.39	+1.2
4,209,860	-		DZA65_RS19455	0.39	-0.9
4,209,860	-		DZA65_RS19455	0.39	-0.3
4,209,860	-		DZA65_RS19455	0.39	-0.0
4,209,941	+		DZA65_RS19455	0.45	-0.1
4,209,941	+		DZA65_RS19455	0.45	+0.7
4,209,941	+		DZA65_RS19455	0.45	-0.7
4,209,948	+		DZA65_RS19455	0.46	+0.3
4,209,948	+		DZA65_RS19455	0.46	-0.5
4,209,948	+		DZA65_RS19455	0.46	-1.3
4,209,948	+		DZA65_RS19455	0.46	+0.9
4,209,948	+		DZA65_RS19455	0.46	+1.4
4,209,948	+		DZA65_RS19455	0.46	-0.9
4,209,948	+		DZA65_RS19455	0.46	-0.6
4,209,948	+		DZA65_RS19455	0.46	-0.8
4,209,948	+		DZA65_RS19455	0.46	+0.1
4,209,949	-		DZA65_RS19455	0.46	-0.0
4,209,949	-		DZA65_RS19455	0.46	-1.1
4,209,949	-		DZA65_RS19455	0.46	-1.2
4,209,962	+		DZA65_RS19455	0.47	+0.4
4,210,042	+		DZA65_RS19455	0.53	-0.1
4,210,042	+		DZA65_RS19455	0.53	+1.1
4,210,043	-		DZA65_RS19455	0.53	+1.4
4,210,043	-		DZA65_RS19455	0.53	+0.2
4,210,043	-		DZA65_RS19455	0.53	-0.2
4,210,064	+		DZA65_RS19455	0.55	+0.0
4,210,065	-		DZA65_RS19455	0.55	-0.3
4,210,065	-		DZA65_RS19455	0.55	+0.3
4,210,065	-		DZA65_RS19455	0.55	+1.0
4,210,065	-		DZA65_RS19455	0.55	-0.4
4,210,127	+		DZA65_RS19455	0.59	-0.1
4,210,127	+		DZA65_RS19455	0.59	+1.9
4,210,127	+		DZA65_RS19455	0.59	-0.8
4,210,127	+		DZA65_RS19455	0.59	+0.6
4,210,127	+		DZA65_RS19455	0.59	+1.8
4,210,128	-		DZA65_RS19455	0.60	-1.1
4,210,128	-		DZA65_RS19455	0.60	-2.2
4,210,144	-		DZA65_RS19455	0.61	-0.5
4,210,164	-		DZA65_RS19455	0.62	-1.2
4,210,164	-		DZA65_RS19455	0.62	-3.4
4,210,333	+		DZA65_RS19455	0.75	-1.2
4,210,333	+		DZA65_RS19455	0.75	-0.6
4,210,333	+		DZA65_RS19455	0.75	-1.3
4,210,333	+		DZA65_RS19455	0.75	+0.5
4,210,333	+		DZA65_RS19455	0.75	+0.3
4,210,333	+		DZA65_RS19455	0.75	-0.7
4,210,333	+		DZA65_RS19455	0.75	+0.1
4,210,333	+		DZA65_RS19455	0.75	-0.8
4,210,333	+		DZA65_RS19455	0.75	-0.5
4,210,334	-		DZA65_RS19455	0.75	+0.4
4,210,334	-		DZA65_RS19455	0.75	+0.6
4,210,334	-		DZA65_RS19455	0.75	-1.5
4,210,334	-		DZA65_RS19455	0.75	-0.8
4,210,334	-		DZA65_RS19455	0.75	+0.6
4,210,334	-		DZA65_RS19455	0.75	+1.0
4,210,334	-		DZA65_RS19455	0.75	-1.0
4,210,334	-		DZA65_RS19455	0.75	-1.2
4,210,382	+		DZA65_RS19455	0.79	-1.4
4,210,382	+		DZA65_RS19455	0.79	-0.2
4,210,382	+		DZA65_RS19455	0.79	+1.0
4,210,514	+		DZA65_RS19455	0.89	-0.1
4,210,565	+				-0.7
4,210,565	+				-0.5
4,210,565	+				-0.1
4,210,566	-				-1.5
4,210,566	-				-0.4
4,210,566	-				-0.9
4,210,566	-				+0.4
4,210,662	-				+0.2
4,210,662	-				-0.0
4,210,662	-				+0.8
4,210,682	+				+0.2
4,210,713	+				+0.4
4,210,730	+				-1.0
4,210,799	+				+0.0
4,210,800	-				-0.4
4,210,801	+				+0.2
4,210,802	-				-1.5
4,210,808	+				-2.9
4,210,836	-				+0.4
4,210,838	+				-1.5
4,210,838	+				-0.8
4,210,838	+				-1.8
4,210,838	+				+0.8
4,210,838	+				-1.8
4,210,838	+				+0.3
4,210,838	+				-2.9
4,210,839	-				-1.2
4,210,839	-				+1.2
4,210,839	-				+0.3
4,210,839	-				-0.5
4,210,839	-				-0.1
4,210,839	-				+0.4
4,210,839	-				+0.1
4,210,839	-				+0.9
4,210,849	+		DZA65_RS19460	0.10	-0.2
4,210,850	-		DZA65_RS19460	0.10	-0.4
4,210,850	-		DZA65_RS19460	0.10	-0.7
4,210,858	+		DZA65_RS19460	0.12	-1.8
4,210,860	+		DZA65_RS19460	0.12	-0.2
4,210,860	+		DZA65_RS19460	0.12	+0.8
4,210,860	+		DZA65_RS19460	0.12	+0.5
4,210,860	+		DZA65_RS19460	0.12	-1.2
4,210,860	+				+0.8
4,210,860	+		DZA65_RS19460	0.12	-1.8
4,210,860	+		DZA65_RS19460	0.12	-1.5
4,210,860	+		DZA65_RS19460	0.12	+0.8
4,210,860	+		DZA65_RS19460	0.12	+0.3
4,210,860	+		DZA65_RS19460	0.12	+0.2
4,210,860	+		DZA65_RS19460	0.12	+1.0
4,210,861	-				+2.4
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4,210,861	-		DZA65_RS19460	0.12	-0.4
4,211,006	-		DZA65_RS19460	0.37	-1.4
4,211,204	+		DZA65_RS19460	0.70	-0.2
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4,211,348	-				-1.4
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4,211,352	-				+0.7
4,211,352	-				-1.1
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