Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19285 and DZA65_RS19290 are separated by 6 nucleotides DZA65_RS19290 and DZA65_RS19295 are separated by 1 nucleotides DZA65_RS19295 and DZA65_RS19300 are separated by 66 nucleotides
DZA65_RS19285: DZA65_RS19285 - DUF3380 domain-containing protein, at 4,168,451 to 4,169,302
_RS19285
DZA65_RS19290: DZA65_RS19290 - hypothetical protein, at 4,169,309 to 4,169,875
_RS19290
DZA65_RS19295: DZA65_RS19295 - hypothetical protein, at 4,169,877 to 4,170,644
_RS19295
DZA65_RS19300: DZA65_RS19300 - Hcp family type VI secretion system effector, at 4,170,711 to 4,171,190
_RS19300
Position (kb) 4169
4170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4168.342 kb on - strand at 4168.401 kb on + strand at 4168.412 kb on + strand at 4168.412 kb on + strand at 4168.413 kb on - strand at 4168.414 kb on + strand at 4168.415 kb on - strand at 4168.415 kb on - strand at 4168.415 kb on - strand at 4168.428 kb on + strand at 4168.428 kb on + strand at 4168.437 kb on - strand at 4168.530 kb on + strand at 4168.531 kb on - strand at 4168.531 kb on - strand at 4168.537 kb on + strand, within DZA65_RS19285 at 4168.570 kb on + strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.620 kb on + strand, within DZA65_RS19285 at 4168.620 kb on + strand, within DZA65_RS19285 at 4168.623 kb on + strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.667 kb on - strand, within DZA65_RS19285 at 4168.680 kb on + strand, within DZA65_RS19285 at 4168.681 kb on - strand, within DZA65_RS19285 at 4168.681 kb on - strand, within DZA65_RS19285 at 4168.763 kb on + strand, within DZA65_RS19285 at 4168.820 kb on - strand, within DZA65_RS19285 at 4168.840 kb on + strand, within DZA65_RS19285 at 4168.840 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.877 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.917 kb on - strand, within DZA65_RS19285 at 4168.917 kb on - strand, within DZA65_RS19285 at 4168.937 kb on - strand, within DZA65_RS19285 at 4168.954 kb on + strand, within DZA65_RS19285 at 4168.955 kb on - strand, within DZA65_RS19285 at 4168.961 kb on + strand, within DZA65_RS19285 at 4169.072 kb on + strand, within DZA65_RS19285 at 4169.072 kb on + strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.075 kb on - strand, within DZA65_RS19285 at 4169.075 kb on - strand, within DZA65_RS19285 at 4169.126 kb on - strand, within DZA65_RS19285 at 4169.153 kb on - strand, within DZA65_RS19285 at 4169.225 kb on + strand at 4169.226 kb on - strand at 4169.227 kb on + strand at 4169.227 kb on + strand at 4169.228 kb on - strand at 4169.256 kb on - strand at 4169.304 kb on - strand at 4169.306 kb on + strand at 4169.383 kb on - strand, within DZA65_RS19290 at 4169.419 kb on - strand, within DZA65_RS19290 at 4169.709 kb on + strand, within DZA65_RS19290 at 4169.775 kb on + strand, within DZA65_RS19290 at 4169.776 kb on - strand, within DZA65_RS19290 at 4169.887 kb on + strand at 4169.923 kb on + strand at 4169.924 kb on - strand at 4169.924 kb on - strand at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.968 kb on + strand, within DZA65_RS19295 at 4169.969 kb on - strand, within DZA65_RS19295 at 4169.971 kb on + strand, within DZA65_RS19295 at 4169.972 kb on - strand, within DZA65_RS19295 at 4170.005 kb on - strand, within DZA65_RS19295 at 4170.060 kb on + strand, within DZA65_RS19295 at 4170.073 kb on + strand, within DZA65_RS19295 at 4170.094 kb on - strand, within DZA65_RS19295 at 4170.168 kb on - strand, within DZA65_RS19295 at 4170.262 kb on - strand, within DZA65_RS19295 at 4170.292 kb on - strand, within DZA65_RS19295 at 4170.303 kb on - strand, within DZA65_RS19295 at 4170.359 kb on - strand, within DZA65_RS19295 at 4170.435 kb on - strand, within DZA65_RS19295 at 4170.465 kb on - strand, within DZA65_RS19295 at 4170.692 kb on + strand at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.788 kb on + strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,168,342 - +1.0 4,168,401 + +1.1 4,168,412 + -0.0 4,168,412 + +1.0 4,168,413 - +0.7 4,168,414 + +0.4 4,168,415 - +1.7 4,168,415 - -1.5 4,168,415 - +0.5 4,168,428 + +0.1 4,168,428 + +0.9 4,168,437 - +0.4 4,168,530 + +0.5 4,168,531 - +0.3 4,168,531 - +0.0 4,168,537 + DZA65_RS19285 0.10 -0.4 4,168,570 + DZA65_RS19285 0.14 +0.2 4,168,571 - DZA65_RS19285 0.14 +3.1 4,168,571 - DZA65_RS19285 0.14 -0.2 4,168,571 - DZA65_RS19285 0.14 +2.4 4,168,571 - DZA65_RS19285 0.14 +0.3 4,168,620 + DZA65_RS19285 0.20 +0.2 4,168,620 + DZA65_RS19285 0.20 -0.3 4,168,623 + DZA65_RS19285 0.20 +0.3 4,168,624 - DZA65_RS19285 0.20 -0.5 4,168,624 - DZA65_RS19285 0.20 -0.4 4,168,624 - DZA65_RS19285 0.20 -0.9 4,168,645 + DZA65_RS19285 0.23 +0.5 4,168,645 + DZA65_RS19285 0.23 -1.1 4,168,645 + DZA65_RS19285 0.23 +0.1 4,168,666 + DZA65_RS19285 0.25 +0.9 4,168,666 + DZA65_RS19285 0.25 -1.4 4,168,666 + DZA65_RS19285 0.25 -0.4 4,168,666 + DZA65_RS19285 0.25 +1.2 4,168,666 + DZA65_RS19285 0.25 +0.4 4,168,667 - DZA65_RS19285 0.25 -0.6 4,168,680 + DZA65_RS19285 0.27 -0.4 4,168,681 - DZA65_RS19285 0.27 -0.2 4,168,681 - DZA65_RS19285 0.27 +0.2 4,168,763 + DZA65_RS19285 0.37 -0.8 4,168,820 - DZA65_RS19285 0.43 +0.4 4,168,840 + DZA65_RS19285 0.46 -0.2 4,168,840 + DZA65_RS19285 0.46 +0.6 4,168,872 + DZA65_RS19285 0.49 +1.4 4,168,872 + DZA65_RS19285 0.49 +0.3 4,168,872 + DZA65_RS19285 0.49 +1.1 4,168,872 + DZA65_RS19285 0.49 -0.0 4,168,872 + DZA65_RS19285 0.49 -1.4 4,168,877 + DZA65_RS19285 0.50 +0.4 4,168,912 + DZA65_RS19285 0.54 +0.1 4,168,912 + DZA65_RS19285 0.54 +0.8 4,168,912 + DZA65_RS19285 0.54 -0.8 4,168,912 + DZA65_RS19285 0.54 +1.2 4,168,913 - DZA65_RS19285 0.54 -0.2 4,168,913 - DZA65_RS19285 0.54 +0.4 4,168,913 - DZA65_RS19285 0.54 +0.3 4,168,913 - DZA65_RS19285 0.54 -1.6 4,168,913 - DZA65_RS19285 0.54 +1.2 4,168,913 - DZA65_RS19285 0.54 +0.8 4,168,916 + DZA65_RS19285 0.55 -0.8 4,168,916 + DZA65_RS19285 0.55 +0.6 4,168,916 + DZA65_RS19285 0.55 -0.2 4,168,917 - DZA65_RS19285 0.55 -1.2 4,168,917 - DZA65_RS19285 0.55 -0.1 4,168,937 - DZA65_RS19285 0.57 +1.2 4,168,954 + DZA65_RS19285 0.59 +0.9 4,168,955 - DZA65_RS19285 0.59 +1.2 4,168,961 + DZA65_RS19285 0.60 +0.4 4,169,072 + DZA65_RS19285 0.73 -0.4 4,169,072 + DZA65_RS19285 0.73 +0.6 4,169,073 - DZA65_RS19285 0.73 -0.2 4,169,073 - DZA65_RS19285 0.73 -0.3 4,169,073 - DZA65_RS19285 0.73 +0.6 4,169,073 - DZA65_RS19285 0.73 -0.4 4,169,075 - DZA65_RS19285 0.73 +0.3 4,169,075 - DZA65_RS19285 0.73 +0.5 4,169,126 - DZA65_RS19285 0.79 +2.3 4,169,153 - DZA65_RS19285 0.82 -0.3 4,169,225 + +0.5 4,169,226 - +0.0 4,169,227 + -0.1 4,169,227 + -0.5 4,169,228 - +0.3 4,169,256 - +1.6 4,169,304 - -0.2 4,169,306 + -2.7 4,169,383 - DZA65_RS19290 0.13 -2.0 4,169,419 - DZA65_RS19290 0.19 -0.5 4,169,709 + DZA65_RS19290 0.71 -0.7 4,169,775 + DZA65_RS19290 0.82 -3.3 4,169,776 - DZA65_RS19290 0.82 -2.9 4,169,887 + +0.2 4,169,923 + +0.2 4,169,924 - -0.4 4,169,924 - +0.6 4,169,966 - DZA65_RS19295 0.12 +1.1 4,169,966 - DZA65_RS19295 0.12 -0.1 4,169,968 + DZA65_RS19295 0.12 +0.3 4,169,969 - DZA65_RS19295 0.12 -0.8 4,169,971 + DZA65_RS19295 0.12 +0.9 4,169,972 - DZA65_RS19295 0.12 +0.3 4,170,005 - DZA65_RS19295 0.17 +0.2 4,170,060 + DZA65_RS19295 0.24 +0.1 4,170,073 + DZA65_RS19295 0.26 -0.5 4,170,094 - DZA65_RS19295 0.28 -0.5 4,170,168 - DZA65_RS19295 0.38 -1.7 4,170,262 - DZA65_RS19295 0.50 +0.2 4,170,292 - DZA65_RS19295 0.54 -1.7 4,170,303 - DZA65_RS19295 0.55 +0.1 4,170,359 - DZA65_RS19295 0.63 +1.1 4,170,435 - DZA65_RS19295 0.73 +0.5 4,170,465 - DZA65_RS19295 0.77 -1.0 4,170,692 + -3.2 4,170,783 - DZA65_RS19300 0.15 +0.8 4,170,783 - DZA65_RS19300 0.15 -0.2 4,170,788 + DZA65_RS19300 0.16 -0.2 4,170,815 - DZA65_RS19300 0.22 +0.5 4,170,815 - DZA65_RS19300 0.22 -0.2 4,170,815 - DZA65_RS19300 0.22 +0.2
Or see this region's nucleotide sequence