Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,068,217	+				-0.2
4,068,363	+				+0.4
4,068,363	+				-0.7
4,068,363	+				+0.5
4,068,364	-				-0.2
4,068,364	-				-0.3
4,068,364	-				+0.1
4,068,364	-				+0.3
4,068,368	+				+0.4
4,068,368	+				-0.9
4,068,368	+				-0.2
4,068,368	+				-1.2
4,068,368	+				+1.3
4,068,369	-				-1.6
4,068,369	-				-0.5
4,068,369	-				+0.4
4,068,369	-				+0.8
4,068,370	+				-0.4
4,068,370	+				-0.2
4,068,370	+				-0.2
4,068,370	+				-0.8
4,068,370	+				-1.2
4,068,370	+				-0.8
4,068,370	+				+0.2
4,068,370	+				-0.7
4,068,371	-				+1.6
4,068,371	-				+0.1
4,068,371	-				-0.2
4,068,371	-				-0.6
4,068,371	-				-0.0
4,068,371	-				-1.2
4,068,373	+				-1.1
4,068,373	+				-0.2
4,068,373	+				+0.0
4,068,373	+				-1.6
4,068,373	+				+1.2
4,068,374	-				+1.3
4,068,374	-				-1.4
4,068,393	-				-2.6
4,068,426	+				+0.2
4,068,426	+				-0.6
4,068,426	+				+0.3
4,068,427	-				+0.8
4,068,427	-				+0.2
4,068,427	-				-1.2
4,068,427	-				+0.6
4,068,427	-				-0.2
4,068,427	-				+0.3
4,068,427	-				+1.6
4,068,444	-				+0.3
4,068,452	+				-0.2
4,068,453	-				-0.8
4,068,453	-				-0.2
4,068,456	+				+1.5
4,068,456	+				-1.0
4,068,457	-				+0.1
4,068,465	-				-1.0
4,068,467	+				-0.8
4,068,468	-				+2.0
4,068,468	-				+0.3
4,068,481	-				+0.3
4,068,502	+				-0.5
4,068,502	+				-0.2
4,068,523	+		DZA65_RS18840	0.10	+0.3
4,068,524	-		DZA65_RS18840	0.11	-0.7
4,068,662	+		DZA65_RS18840	0.36	-1.4
4,068,663	-		DZA65_RS18840	0.36	+0.0
4,068,663	-		DZA65_RS18840	0.36	+1.2
4,068,663	-		DZA65_RS18840	0.36	-0.2
4,068,663	-		DZA65_RS18840	0.36	-0.0
4,068,666	+		DZA65_RS18840	0.36	+1.0
4,068,667	-		DZA65_RS18840	0.37	-0.1
4,068,678	+		DZA65_RS18840	0.39	+0.8
4,068,679	-		DZA65_RS18840	0.39	+0.2
4,068,679	-		DZA65_RS18840	0.39	-1.4
4,068,682	+		DZA65_RS18840	0.39	-0.2
4,068,704	+		DZA65_RS18840	0.43	+0.2
4,068,835	+		DZA65_RS18840	0.67	+1.1
4,068,836	-		DZA65_RS18840	0.67	-0.6
4,068,841	+		DZA65_RS18840	0.68	+0.6
4,068,842	-		DZA65_RS18840	0.68	+0.2
4,068,902	-		DZA65_RS18840	0.79	-1.0
4,068,937	-		DZA65_RS18840	0.86	-0.6
4,069,037	+				+1.4
4,069,051	+				+0.3
4,069,051	+				+0.3
4,069,053	+				-2.6
4,069,054	-				+1.3
4,069,054	-				+0.9
4,069,063	+				+0.5
4,069,100	-				+0.4
4,069,207	+		DZA65_RS18845	0.20	-1.7
4,069,208	-				+0.0
4,069,211	+		DZA65_RS18845	0.20	+0.4
4,069,211	+		DZA65_RS18845	0.20	+0.7
4,069,212	-		DZA65_RS18845	0.20	+1.1
4,069,212	-		DZA65_RS18845	0.20	+0.0
4,069,212	-		DZA65_RS18845	0.20	-1.2
4,069,212	-		DZA65_RS18845	0.20	+0.2
4,069,263	-		DZA65_RS18845	0.25	+0.2
4,069,281	+		DZA65_RS18845	0.27	+0.8
4,069,293	-		DZA65_RS18845	0.28	+1.3
4,069,293	-		DZA65_RS18845	0.28	+1.8
4,069,325	+		DZA65_RS18845	0.31	+1.1
4,069,328	+		DZA65_RS18845	0.32	+0.2
4,069,379	+		DZA65_RS18845	0.37	-0.1
4,069,421	+		DZA65_RS18845	0.41	+0.6
4,069,432	-		DZA65_RS18845	0.42	+0.3
4,069,557	-		DZA65_RS18845	0.55	+0.9
4,069,561	+		DZA65_RS18845	0.55	+1.5
4,069,589	-		DZA65_RS18845	0.58	+1.0
4,069,668	-		DZA65_RS18845	0.66	-0.9
4,069,724	+		DZA65_RS18845	0.71	+0.4
4,069,753	-		DZA65_RS18845	0.74	-2.6
4,069,846	-		DZA65_RS18845	0.84	+0.6
4,069,882	+		DZA65_RS18845	0.87	+1.0
4,069,884	+		DZA65_RS18845	0.87	+0.1
4,069,884	+		DZA65_RS18845	0.87	+1.1
4,069,884	+		DZA65_RS18845	0.87	-0.5
4,069,885	-		DZA65_RS18845	0.87	+0.3
4,069,885	-		DZA65_RS18845	0.87	-0.7
4,070,010	-				-0.1
4,070,012	+				-0.6
4,070,012	+				+0.4
4,070,013	-				-0.7
4,070,014	+				+0.6
4,070,014	+				-0.5
4,070,014	+				-0.4
4,070,014	+				-0.8
4,070,014	+				+0.5
4,070,014	+				-0.5
4,070,015	-				+1.3
4,070,015	-				+2.9
4,070,015	-				-0.0
4,070,021	-				-0.2
4,070,028	+				+0.5
4,070,028	+				+0.8
4,070,032	-				+0.3
4,070,048	+				+0.8
4,070,049	-				+1.8
4,070,049	-				-0.5
4,070,049	-				+1.2
4,070,072	+				-2.4
4,070,084	+				-0.2
4,070,084	+				+0.1
4,070,085	-				-2.0
4,070,085	-				+1.9
4,070,113	+				+0.5
4,070,114	-				-0.6
4,070,117	-				+2.6
4,070,133	+				-0.1
4,070,150	+				-2.4
4,070,150	+				-0.7
4,070,151	-				+0.1
4,070,151	-				-0.0
4,070,178	+				-0.6
4,070,179	-				-2.2
4,070,179	-				+0.7
4,070,233	-				+0.9
4,070,396	+		DZA65_RS18850	0.20	+0.4
4,070,396	+		DZA65_RS18850	0.20	+1.1
4,070,396	+		DZA65_RS18850	0.20	+0.0
4,070,397	-		DZA65_RS18850	0.20	-0.2
4,070,397	-		DZA65_RS18850	0.20	+1.0
4,070,688	+		DZA65_RS18850	0.48	+0.4
4,070,689	-		DZA65_RS18850	0.48	+0.4
4,070,696	-		DZA65_RS18850	0.49	-0.8
4,070,696	-		DZA65_RS18850	0.49	+1.2
4,070,719	+		DZA65_RS18850	0.51	-0.3
4,070,719	+		DZA65_RS18850	0.51	-0.2
4,070,719	+		DZA65_RS18850	0.51	+1.0
4,070,719	+		DZA65_RS18850	0.51	-0.6
4,070,719	+		DZA65_RS18850	0.51	-0.8
4,070,719	+		DZA65_RS18850	0.51	+1.8
4,070,720	-		DZA65_RS18850	0.51	+1.3
4,070,720	-		DZA65_RS18850	0.51	-0.2
4,070,720	-		DZA65_RS18850	0.51	-2.7
4,070,722	+		DZA65_RS18850	0.52	-0.6
4,070,722	+		DZA65_RS18850	0.52	-0.6
4,070,722	+		DZA65_RS18850	0.52	-0.4
4,070,722	+		DZA65_RS18850	0.52	-0.5
4,070,722	+		DZA65_RS18850	0.52	+0.2
4,070,722	+		DZA65_RS18850	0.52	+1.8
4,070,723	-		DZA65_RS18850	0.52	-0.8
4,070,723	-		DZA65_RS18850	0.52	-0.2
4,070,723	-		DZA65_RS18850	0.52	+1.3
4,070,723	-		DZA65_RS18850	0.52	-1.0
4,070,723	-		DZA65_RS18850	0.52	+0.2
4,070,723	-		DZA65_RS18850	0.52	-0.6
4,070,723	-		DZA65_RS18850	0.52	+1.6
4,070,723	-		DZA65_RS18850	0.52	-2.4
4,070,723	-		DZA65_RS18850	0.52	-1.4
4,070,723	-		DZA65_RS18850	0.52	-1.6
4,070,723	-		DZA65_RS18850	0.52	+0.4
4,070,723	-		DZA65_RS18850	0.52	+1.5
4,070,723	-		DZA65_RS18850	0.52	-0.2
4,070,744	+		DZA65_RS18850	0.54	+0.6
4,070,745	-		DZA65_RS18850	0.54	+1.8
4,070,788	-		DZA65_RS18850	0.58	-0.5
4,070,990	+		DZA65_RS18850	0.78	-0.5
4,070,990	+		DZA65_RS18850	0.78	-0.0
4,070,991	-		DZA65_RS18850	0.78	+0.5
4,070,991	-		DZA65_RS18850	0.78	+0.1
4,070,991	-		DZA65_RS18850	0.78	-1.1