Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18640

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,013,845	+		DZA65_RS18635	0.58	-1.3
4,013,845	+		DZA65_RS18635	0.58	-0.8
4,013,967	-		DZA65_RS18635	0.66	-0.1
4,013,969	+		DZA65_RS18635	0.67	-0.0
4,013,970	-		DZA65_RS18635	0.67	+0.2
4,013,977	+		DZA65_RS18635	0.67	-0.2
4,013,978	-		DZA65_RS18635	0.67	+0.7
4,013,989	+		DZA65_RS18635	0.68	-0.8
4,013,989	+		DZA65_RS18635	0.68	+0.7
4,013,989	+		DZA65_RS18635	0.68	-1.1
4,013,989	+		DZA65_RS18635	0.68	-0.8
4,014,090	+		DZA65_RS18635	0.75	+1.6
4,014,096	+		DZA65_RS18635	0.76	-0.5
4,014,211	+		DZA65_RS18635	0.84	+1.0
4,014,212	-		DZA65_RS18635	0.84	+0.7
4,014,256	+		DZA65_RS18635	0.87	+0.9
4,014,327	+				+0.1
4,014,327	+				-0.5
4,014,327	+				-0.1
4,014,328	-				+0.4
4,014,328	-				+1.0
4,014,353	+				-0.1
4,014,353	+				-0.6
4,014,353	+				-0.5
4,014,354	-				-1.0
4,014,354	-				+0.1
4,014,354	-				-0.6
4,014,354	-				+0.6
4,014,374	+				+1.7
4,014,375	-				-1.6
4,014,375	-				-2.7
4,014,378	+				-0.3
4,014,378	+				-0.3
4,014,378	+				+0.5
4,014,379	-				-1.3
4,014,379	-				+0.1
4,014,379	-				-0.6
4,014,379	-				+0.3
4,014,381	+				+1.1
4,014,381	+				-0.3
4,014,381	+				+1.7
4,014,381	+				-1.1
4,014,381	+				+0.0
4,014,381	+				+0.7
4,014,381	+				-0.1
4,014,381	+				+0.6
4,014,381	+				+0.7
4,014,382	-				+0.4
4,014,382	-				+0.2
4,014,382	-				+0.1
4,014,382	-				-0.8
4,014,382	-				+0.7
4,014,382	-				-1.6
4,014,382	-				-0.4
4,014,382	-				+1.5
4,014,382	-				-0.8
4,014,382	-				+0.0
4,014,382	-				+1.3
4,014,382	-				-0.7
4,014,439	+				-0.6
4,014,440	-				-2.3
4,014,463	+				-0.4
4,014,463	+				+0.2
4,014,463	+				+1.5
4,014,464	-				-1.6
4,014,506	-				+1.2
4,014,506	-				+1.0
4,014,506	-				-0.1
4,014,621	+				-0.0
4,014,679	-				-1.6
4,014,701	-				+0.7
4,014,732	+				-1.0
4,014,732	+				+2.0
4,014,732	+				-1.8
4,014,732	+				+1.1
4,014,732	+				-0.0
4,014,732	+				+1.0
4,014,732	+				-0.0
4,014,733	-				-1.2
4,014,733	-				+0.9
4,014,733	-				-0.5
4,014,733	-				-0.3
4,014,733	-				+1.3
4,014,733	-				-2.1
4,014,733	-				+1.0
4,014,733	-				-0.8
4,014,733	-				-0.0
4,014,733	-				+0.7
4,014,735	+				+0.3
4,014,735	+				-1.3
4,014,735	+				-0.8
4,014,735	+				-0.8
4,014,735	+				-0.1
4,014,735	+				+0.2
4,014,822	+				-0.7
4,014,823	-				-0.0
4,014,823	-				+0.7
4,014,823	-				-0.1
4,014,826	+				-0.6
4,014,826	+				+1.9
4,014,826	+				-0.6
4,014,826	+				+1.0
4,014,826	+				-1.1
4,014,827	-				+0.9
4,015,022	-		DZA65_RS18640	0.20	+0.7
4,015,022	-		DZA65_RS18640	0.20	+0.7
4,015,022	-		DZA65_RS18640	0.20	+0.2
4,015,022	-		DZA65_RS18640	0.20	+0.2
4,015,022	-		DZA65_RS18640	0.20	+0.6
4,015,048	+		DZA65_RS18640	0.22	-0.2
4,015,048	+		DZA65_RS18640	0.22	-0.7
4,015,049	-		DZA65_RS18640	0.22	-1.6
4,015,148	+		DZA65_RS18640	0.32	-0.6
4,015,148	+		DZA65_RS18640	0.32	+1.1
4,015,166	+		DZA65_RS18640	0.34	-0.0
4,015,166	+		DZA65_RS18640	0.34	+0.4
4,015,167	-		DZA65_RS18640	0.34	-0.8
4,015,167	-		DZA65_RS18640	0.34	+1.0
4,015,167	-		DZA65_RS18640	0.34	-1.4
4,015,186	+		DZA65_RS18640	0.36	-1.3
4,015,186	+		DZA65_RS18640	0.36	+0.2
4,015,186	+		DZA65_RS18640	0.36	+1.0
4,015,186	+		DZA65_RS18640	0.36	+1.1
4,015,186	+		DZA65_RS18640	0.36	-0.6
4,015,186	+		DZA65_RS18640	0.36	+1.2
4,015,186	+		DZA65_RS18640	0.36	-0.3
4,015,186	+		DZA65_RS18640	0.36	+0.6
4,015,186	+		DZA65_RS18640	0.36	+1.0
4,015,186	+		DZA65_RS18640	0.36	-0.3
4,015,187	-		DZA65_RS18640	0.36	+0.3
4,015,187	-		DZA65_RS18640	0.36	+0.4
4,015,187	-		DZA65_RS18640	0.36	-0.1
4,015,187	-		DZA65_RS18640	0.36	+0.5
4,015,187	-		DZA65_RS18640	0.36	-1.8
4,015,187	-		DZA65_RS18640	0.36	-0.3
4,015,187	-		DZA65_RS18640	0.36	+1.2
4,015,187	-		DZA65_RS18640	0.36	+0.1
4,015,252	+		DZA65_RS18640	0.43	+0.5
4,015,252	+		DZA65_RS18640	0.43	-0.3
4,015,252	+		DZA65_RS18640	0.43	-0.2
4,015,256	+		DZA65_RS18640	0.43	+1.0
4,015,256	+		DZA65_RS18640	0.43	-0.7
4,015,256	+		DZA65_RS18640	0.43	-0.3
4,015,256	+		DZA65_RS18640	0.43	+0.0
4,015,257	-		DZA65_RS18640	0.43	-1.3
4,015,257	-		DZA65_RS18640	0.43	-0.6
4,015,320	+		DZA65_RS18640	0.49	-1.1
4,015,321	-		DZA65_RS18640	0.50	+0.7
4,015,420	+		DZA65_RS18640	0.59	+0.7
4,015,420	+		DZA65_RS18640	0.59	-0.2
4,015,420	+		DZA65_RS18640	0.59	-1.6
4,015,420	+		DZA65_RS18640	0.59	+0.9
4,015,420	+		DZA65_RS18640	0.59	-1.8
4,015,420	+		DZA65_RS18640	0.59	-2.1
4,015,420	+				+0.7
4,015,420	+		DZA65_RS18640	0.59	+1.4
4,015,421	-		DZA65_RS18640	0.59	+1.0
4,015,421	-		DZA65_RS18640	0.59	-1.3
4,015,421	-		DZA65_RS18640	0.59	-0.6
4,015,421	-		DZA65_RS18640	0.59	+0.3
4,015,438	+		DZA65_RS18640	0.61	-1.6
4,015,438	+		DZA65_RS18640	0.61	-1.3
4,015,439	-		DZA65_RS18640	0.61	+1.7
4,015,439	-		DZA65_RS18640	0.61	-0.5
4,015,439	-		DZA65_RS18640	0.61	-0.3
4,015,441	+		DZA65_RS18640	0.61	+0.1
4,015,441	+		DZA65_RS18640	0.61	-0.7
4,015,441	+		DZA65_RS18640	0.61	+0.6
4,015,441	+		DZA65_RS18640	0.61	+0.1
4,015,441	+		DZA65_RS18640	0.61	-1.3
4,015,441	+		DZA65_RS18640	0.61	+1.1
4,015,441	+		DZA65_RS18640	0.61	-0.4
4,015,442	-		DZA65_RS18640	0.62	+0.1
4,015,442	-		DZA65_RS18640	0.62	+2.2
4,015,442	-		DZA65_RS18640	0.62	-0.6
4,015,442	-		DZA65_RS18640	0.62	+0.7
4,015,529	+		DZA65_RS18640	0.70	+0.1
4,015,529	+		DZA65_RS18640	0.70	+0.5
4,015,529	+		DZA65_RS18640	0.70	+1.5
4,015,567	+		DZA65_RS18640	0.74	+0.5
4,015,599	+		DZA65_RS18640	0.77	-0.8
4,015,599	+		DZA65_RS18640	0.77	+1.1
4,015,599	+		DZA65_RS18640	0.77	-1.8
4,015,599	+		DZA65_RS18640	0.77	-0.1
4,015,600	-				-0.3
4,015,600	-		DZA65_RS18640	0.77	-0.5
4,015,600	-		DZA65_RS18640	0.77	-2.1
4,015,600	-		DZA65_RS18640	0.77	+0.9
4,015,600	-		DZA65_RS18640	0.77	+0.7
4,015,672	+				+0.4
4,015,690	+		DZA65_RS18640	0.86	-1.3
4,015,690	+		DZA65_RS18640	0.86	-0.1
4,015,690	+		DZA65_RS18640	0.86	+0.6
4,015,690	+		DZA65_RS18640	0.86	+0.7
4,015,690	+		DZA65_RS18640	0.86	+1.5
4,015,690	+		DZA65_RS18640	0.86	+1.2
4,015,691	-		DZA65_RS18640	0.86	-2.6
4,015,691	-		DZA65_RS18640	0.86	+1.2
4,015,691	-		DZA65_RS18640	0.86	-0.6
4,015,691	-		DZA65_RS18640	0.86	+1.4
4,015,691	-		DZA65_RS18640	0.86	+3.3
4,015,691	-		DZA65_RS18640	0.86	+0.1
4,015,743	-				+0.7
4,015,765	+				+0.0
4,015,765	+				+0.7
4,015,765	+				+0.0
4,015,766	-				+0.7
4,015,766	-				+0.9
4,015,766	-				-0.2
4,015,766	-				-0.1
4,015,774	+				-0.4
4,015,774	+				+1.1
4,015,775	-				+0.6
4,015,775	-				-0.6
4,015,814	+				-0.0
4,015,815	-				-0.5
4,015,815	-				+0.0
4,015,841	+				+0.7
4,015,842	-				+1.6
4,015,873	+				+0.2
4,015,873	+				-0.8
4,015,873	+				+1.3
4,015,873	+				-2.8
4,015,873	+				-0.6
4,015,873	+				+0.8
4,015,873	+				+0.5
4,015,873	+				+1.9
4,015,874	-				+0.3
4,015,874	-				-0.1
4,015,874	-				+1.3
4,015,874	-				+2.3
4,015,874	-				+0.3
4,015,874	-				+0.0
4,015,874	-				-0.1
4,015,874	-				-0.1
4,015,874	-				-0.7
4,015,874	-				+0.0
4,015,887	-				+0.7
4,015,887	-				-0.1
4,015,887	-				-0.3
4,015,887	-				-1.3
4,015,890	+				-0.4
4,015,890	+				-0.2
4,015,890	+				+0.6
4,015,890	+				-0.1
4,015,891	-				+0.3
4,015,891	-				-0.2
4,015,891	-				-0.3
4,015,891	-				+0.2
4,015,891	-				+0.9
4,015,891	-				+0.1
4,015,891	-				+0.7
4,015,891	-				+1.6
4,015,891	-				+0.1
4,015,891	-				+0.3
4,015,891	-				+0.7
4,015,891	-				+0.9
4,015,895	+				+0.9
4,015,897	+				+0.5
4,015,897	+				-0.6
4,015,897	+				-0.6
4,015,897	+				-2.1
4,015,897	+				-1.8
4,015,897	+				+1.7
4,015,897	+				-0.3
4,015,897	+				+1.3
4,015,897	+				+0.0
4,015,897	+				-0.1
4,015,897	+				-0.6
4,015,897	+				+2.3
4,015,897	+				+0.2
4,015,897	+				-0.6
4,015,897	+				+0.3
4,015,897	+				-1.1
4,015,897	+				-1.3
4,015,897	+				-0.3
4,015,897	+				-0.3
4,015,898	-				+0.6
4,015,898	-				+0.0
4,015,898	-				+0.4
4,015,898	-				+1.1
4,015,898	-				-0.3
4,015,898	-				+0.5
4,015,898	-				-0.6
4,015,898	-				+0.5
4,015,898	-				-2.1
4,015,898	-				-0.5
4,015,898	-				+1.3
4,015,898	-				-0.8
4,015,898	-				-0.7
4,015,898	-				+0.7
4,015,898	-				-0.3
4,015,898	-				-0.7
4,015,898	-				+0.6
4,015,898	-				-0.8
4,015,915	+				-0.6
4,015,920	+				-1.6
4,015,920	+				+0.4
4,015,920	+				+0.4
4,015,932	+				-0.0