Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,968,047	+				+0.1
3,968,047	+				+0.0
3,968,047	+				-0.7
3,968,047	+				-0.0
3,968,047	+				+0.2
3,968,048	-				+0.0
3,968,048	-				-1.2
3,968,048	-				-1.3
3,968,048	-				+0.5
3,968,048	-				-1.3
3,968,074	+				-0.9
3,968,156	+				-0.9
3,968,156	+				-0.1
3,968,156	+				-1.3
3,968,157	-				-0.7
3,968,157	-				-1.9
3,968,170	+				-0.3
3,968,170	+				-0.2
3,968,170	+				-2.1
3,968,171	-				+0.3
3,968,171	-				+1.1
3,968,171	-				+0.3
3,968,171	-				-0.4
3,968,175	+				-0.0
3,968,175	+				-0.2
3,968,175	+				+0.4
3,968,176	-				+0.7
3,968,176	-				-1.3
3,968,176	-				-1.6
3,968,176	-				-1.3
3,968,178	-				-0.0
3,968,202	+		DZA65_RS18410	0.11	+0.5
3,968,216	+		DZA65_RS18410	0.14	+0.3
3,968,216	+		DZA65_RS18410	0.14	+3.7
3,968,216	+		DZA65_RS18410	0.14	+0.7
3,968,216	+		DZA65_RS18410	0.14	-0.6
3,968,216	+		DZA65_RS18410	0.14	-0.9
3,968,216	+		DZA65_RS18410	0.14	-1.6
3,968,220	+		DZA65_RS18410	0.15	-0.3
3,968,220	+		DZA65_RS18410	0.15	-2.1
3,968,220	+		DZA65_RS18410	0.15	-0.5
3,968,245	+		DZA65_RS18410	0.21	-1.3
3,968,246	-		DZA65_RS18410	0.21	-2.1
3,968,260	+		DZA65_RS18410	0.25	-2.5
3,968,260	+		DZA65_RS18410	0.25	+0.5
3,968,289	+		DZA65_RS18410	0.31	+0.7
3,968,289	+		DZA65_RS18410	0.31	-1.9
3,968,289	+		DZA65_RS18410	0.31	-1.9
3,968,289	+		DZA65_RS18410	0.31	-0.9
3,968,289	+		DZA65_RS18410	0.31	+0.4
3,968,289	+		DZA65_RS18410	0.31	-0.1
3,968,289	+		DZA65_RS18410	0.31	-1.0
3,968,289	+		DZA65_RS18410	0.31	-0.6
3,968,290	-		DZA65_RS18410	0.32	+0.7
3,968,290	-		DZA65_RS18410	0.32	+0.7
3,968,290	-		DZA65_RS18410	0.32	-1.9
3,968,290	-		DZA65_RS18410	0.32	+1.6
3,968,290	-		DZA65_RS18410	0.32	+1.4
3,968,313	+		DZA65_RS18410	0.37	+0.4
3,968,458	-		DZA65_RS18410	0.71	-0.9
3,968,534	+		DZA65_RS18410	0.89	-0.5
3,968,534	+		DZA65_RS18410	0.89	-1.6
3,968,534	+		DZA65_RS18410	0.89	-0.3
3,968,534	+		DZA65_RS18410	0.89	-0.7
3,968,534	+		DZA65_RS18410	0.89	-0.9
3,968,534	+		DZA65_RS18410	0.89	-0.6
3,968,534	+		DZA65_RS18410	0.89	-1.5
3,968,534	+		DZA65_RS18410	0.89	-1.6
3,968,535	-		DZA65_RS18410	0.89	+0.3
3,968,535	-		DZA65_RS18410	0.89	-1.6
3,968,535	-		DZA65_RS18410	0.89	+0.8
3,968,535	-		DZA65_RS18410	0.89	+0.5
3,968,556	-				+0.1
3,968,556	-				-1.9
3,968,573	-				-0.5
3,968,573	-				-0.9
3,968,595	-				-0.9
3,968,659	+				-1.2
3,968,660	-				-1.3
3,968,706	-				-0.4
3,968,733	+				+0.3
3,968,734	-				+0.2
3,968,734	-				+0.2
3,968,734	-				+0.5
3,968,737	+				+1.0
3,968,737	+				-0.0
3,968,738	-				+0.4
3,968,801	+				-0.6
3,968,801	+				+0.7
3,968,819	+				-0.0
3,968,819	+				-1.3
3,968,820	-				-1.3
3,968,820	-				+0.4
3,968,820	-				+0.7
3,968,840	-				-0.5
3,968,862	+				+0.9
3,968,862	+				-0.0
3,968,862	+				+0.3
3,968,863	-				+0.7
3,968,863	-				+0.1
3,968,863	-				+0.3
3,968,863	-				+0.3
3,968,877	+				+0.1
3,968,877	+				-1.3
3,968,883	+				+1.3
3,968,888	+				+0.2
3,968,888	+				+0.7
3,968,889	-				+0.3
3,968,889	-				+1.0
3,968,940	+				+0.2
3,968,941	-				-0.5
3,968,941	-				+0.5
3,969,014	+				-0.0
3,969,014	+				-0.1
3,969,015	-				-0.7
3,969,015	-				-1.3
3,969,015	-				+1.3
3,969,015	-				+1.0
3,969,020	+				-0.3
3,969,020	+				+0.3
3,969,127	+		DZA65_RS18415	0.11	-0.4
3,969,127	+		DZA65_RS18415	0.11	+0.1
3,969,127	+		DZA65_RS18415	0.11	-0.8
3,969,127	+		DZA65_RS18415	0.11	-3.4
3,969,127	+		DZA65_RS18415	0.11	+0.2
3,969,127	+		DZA65_RS18415	0.11	+0.1
3,969,128	-		DZA65_RS18415	0.11	+0.6
3,969,128	-		DZA65_RS18415	0.11	+1.2
3,969,128	-		DZA65_RS18415	0.11	-1.3
3,969,130	-		DZA65_RS18415	0.11	+0.9
3,969,141	-		DZA65_RS18415	0.12	-0.2
3,969,192	-		DZA65_RS18415	0.15	+1.2
3,969,232	+		DZA65_RS18415	0.18	-1.0
3,969,232	+		DZA65_RS18415	0.18	-0.3
3,969,233	-		DZA65_RS18415	0.18	+1.5
3,969,233	-		DZA65_RS18415	0.18	-0.0
3,969,233	-		DZA65_RS18415	0.18	-0.1
3,969,255	+		DZA65_RS18415	0.19	-2.3
3,969,255	+		DZA65_RS18415	0.19	+0.7
3,969,255	+		DZA65_RS18415	0.19	+0.7
3,969,256	-		DZA65_RS18415	0.19	-1.1
3,969,256	-		DZA65_RS18415	0.19	+0.4
3,969,256	-		DZA65_RS18415	0.19	+0.7
3,969,256	-		DZA65_RS18415	0.19	+0.4
3,969,256	-		DZA65_RS18415	0.19	-0.9
3,969,275	+		DZA65_RS18415	0.20	+0.1
3,969,275	+		DZA65_RS18415	0.20	-0.7
3,969,275	+		DZA65_RS18415	0.20	+1.7
3,969,275	+		DZA65_RS18415	0.20	-1.6
3,969,275	+		DZA65_RS18415	0.20	-0.7
3,969,275	+				+3.0
3,969,275	+		DZA65_RS18415	0.20	+0.8
3,969,275	+		DZA65_RS18415	0.20	-1.3
3,969,276	-		DZA65_RS18415	0.20	-0.3
3,969,276	-		DZA65_RS18415	0.20	-0.1
3,969,276	-		DZA65_RS18415	0.20	-0.2
3,969,276	-		DZA65_RS18415	0.20	+0.3
3,969,276	-		DZA65_RS18415	0.20	-0.4
3,969,276	-		DZA65_RS18415	0.20	+1.9
3,969,276	-		DZA65_RS18415	0.20	-0.7
3,969,276	-		DZA65_RS18415	0.20	-0.6
3,969,276	-		DZA65_RS18415	0.20	-0.4
3,969,276	-		DZA65_RS18415	0.20	-1.0
3,969,276	-		DZA65_RS18415	0.20	-0.9
3,969,276	-		DZA65_RS18415	0.20	-0.1
3,969,276	-		DZA65_RS18415	0.20	+1.6
3,969,276	-		DZA65_RS18415	0.20	+1.2
3,969,276	-		DZA65_RS18415	0.20	+0.2
3,969,279	+		DZA65_RS18415	0.21	+0.1
3,969,279	+		DZA65_RS18415	0.21	+0.7
3,969,280	-		DZA65_RS18415	0.21	+1.6
3,969,280	-		DZA65_RS18415	0.21	-0.1
3,969,385	+		DZA65_RS18415	0.27	-0.6
3,969,386	-		DZA65_RS18415	0.27	+0.7
3,969,386	-		DZA65_RS18415	0.27	-0.8
3,969,386	-		DZA65_RS18415	0.27	+1.3
3,969,397	+		DZA65_RS18415	0.28	+0.7
3,969,397	+		DZA65_RS18415	0.28	+0.7
3,969,397	+		DZA65_RS18415	0.28	-1.3
3,969,397	+		DZA65_RS18415	0.28	-1.3
3,969,397	+		DZA65_RS18415	0.28	-0.1
3,969,397	+		DZA65_RS18415	0.28	+0.3
3,969,397	+		DZA65_RS18415	0.28	+0.3
3,969,398	-		DZA65_RS18415	0.28	-0.3
3,969,398	-		DZA65_RS18415	0.28	-0.2
3,969,398	-		DZA65_RS18415	0.28	+0.4
3,969,398	-		DZA65_RS18415	0.28	-0.3
3,969,400	+		DZA65_RS18415	0.28	+0.2
3,969,400	+		DZA65_RS18415	0.28	-1.3
3,969,400	+		DZA65_RS18415	0.28	+0.9
3,969,400	+		DZA65_RS18415	0.28	-0.9
3,969,400	+		DZA65_RS18415	0.28	+2.4
3,969,400	+		DZA65_RS18415	0.28	+0.4
3,969,400	+		DZA65_RS18415	0.28	+0.4
3,969,400	+		DZA65_RS18415	0.28	-2.3
3,969,400	+		DZA65_RS18415	0.28	-0.0
3,969,400	+		DZA65_RS18415	0.28	-1.9
3,969,400	+		DZA65_RS18415	0.28	+1.1
3,969,400	+		DZA65_RS18415	0.28	-0.1
3,969,400	+		DZA65_RS18415	0.28	-0.6
3,969,401	-		DZA65_RS18415	0.28	-0.6
3,969,401	-		DZA65_RS18415	0.28	-2.8
3,969,401	-		DZA65_RS18415	0.28	-0.3
3,969,401	-		DZA65_RS18415	0.28	+0.3
3,969,401	-		DZA65_RS18415	0.28	+0.3
3,969,401	-		DZA65_RS18415	0.28	-0.4
3,969,401	-		DZA65_RS18415	0.28	+0.4
3,969,401	-		DZA65_RS18415	0.28	-0.3
3,969,401	-		DZA65_RS18415	0.28	+0.7
3,969,401	-		DZA65_RS18415	0.28	+0.5
3,969,401	-		DZA65_RS18415	0.28	+0.1
3,969,447	+		DZA65_RS18415	0.31	+0.1
3,969,472	+		DZA65_RS18415	0.33	+0.9
3,969,473	-		DZA65_RS18415	0.33	-0.9
3,969,473	-		DZA65_RS18415	0.33	-0.9
3,969,498	+		DZA65_RS18415	0.34	-1.6
3,969,498	+		DZA65_RS18415	0.34	-0.6
3,969,498	+		DZA65_RS18415	0.34	+0.9
3,969,498	+		DZA65_RS18415	0.34	-0.0
3,969,498	+		DZA65_RS18415	0.34	+0.7
3,969,499	-		DZA65_RS18415	0.34	-0.6
3,969,499	-		DZA65_RS18415	0.34	-0.0
3,969,499	-		DZA65_RS18415	0.34	+0.4
3,969,514	-		DZA65_RS18415	0.35	+0.4
3,969,625	+		DZA65_RS18415	0.42	-0.9
3,969,678	+		DZA65_RS18415	0.46	-0.3
3,969,679	-		DZA65_RS18415	0.46	+3.7
3,969,991	+		DZA65_RS18415	0.65	+1.9
3,969,991	+		DZA65_RS18415	0.65	+0.7
3,969,991	+		DZA65_RS18415	0.65	-1.1
3,969,991	+		DZA65_RS18415	0.65	-0.0
3,969,991	+		DZA65_RS18415	0.65	-1.5
3,969,991	+		DZA65_RS18415	0.65	+0.1
3,969,991	+		DZA65_RS18415	0.65	+0.4
3,969,991	+		DZA65_RS18415	0.65	+0.3
3,969,992	-		DZA65_RS18415	0.65	+1.7
3,969,992	-		DZA65_RS18415	0.65	+0.9
3,969,992	-		DZA65_RS18415	0.65	+0.3
3,969,992	-		DZA65_RS18415	0.65	-0.3
3,969,992	-		DZA65_RS18415	0.65	+0.5
3,969,992	-		DZA65_RS18415	0.65	+0.9
3,969,992	-		DZA65_RS18415	0.65	+0.2
3,969,992	-		DZA65_RS18415	0.65	-2.0
3,969,992	-		DZA65_RS18415	0.65	-0.8
3,969,992	-		DZA65_RS18415	0.65	-1.0
3,969,992	-		DZA65_RS18415	0.65	+0.0
3,969,992	-		DZA65_RS18415	0.65	-0.5
3,969,992	-		DZA65_RS18415	0.65	-1.2
3,969,992	-		DZA65_RS18415	0.65	-0.2
3,969,992	-		DZA65_RS18415	0.65	-1.6
3,969,992	-		DZA65_RS18415	0.65	+0.4
3,969,992	-		DZA65_RS18415	0.65	-0.2
3,969,992	-				-1.3
3,969,992	-		DZA65_RS18415	0.65	+0.1
3,969,995	+		DZA65_RS18415	0.66	-0.5
3,969,995	+		DZA65_RS18415	0.66	+0.3
3,969,995	+		DZA65_RS18415	0.66	+1.0
3,969,995	+		DZA65_RS18415	0.66	-0.3
3,969,995	+		DZA65_RS18415	0.66	+0.8
3,969,995	+		DZA65_RS18415	0.66	+0.1
3,969,996	-		DZA65_RS18415	0.66	+1.3
3,969,996	-		DZA65_RS18415	0.66	+0.4
3,969,996	-				+0.7
3,969,996	-		DZA65_RS18415	0.66	+0.5
3,969,996	-		DZA65_RS18415	0.66	-0.4
3,970,044	+		DZA65_RS18415	0.69	-0.6
3,970,045	-		DZA65_RS18415	0.69	-0.5
3,970,083	+		DZA65_RS18415	0.71	-0.7
3,970,083	+		DZA65_RS18415	0.71	-0.6
3,970,197	+		DZA65_RS18415	0.78	-1.4
3,970,197	+		DZA65_RS18415	0.78	+1.0
3,970,197	+		DZA65_RS18415	0.78	+0.3
3,970,197	+		DZA65_RS18415	0.78	-0.6
3,970,197	+		DZA65_RS18415	0.78	+1.0
3,970,198	-		DZA65_RS18415	0.78	+1.3
3,970,198	-		DZA65_RS18415	0.78	+0.1
3,970,198	-		DZA65_RS18415	0.78	-1.2
3,970,198	-		DZA65_RS18415	0.78	-1.3
3,970,198	-		DZA65_RS18415	0.78	+0.0
3,970,336	+		DZA65_RS18415	0.87	-1.0
3,970,337	-		DZA65_RS18415	0.87	+0.7
3,970,337	-		DZA65_RS18415	0.87	-0.5
3,970,394	+				-2.3
3,970,394	+				-1.0
3,970,648	-				-0.7
3,970,826	+				-0.4
3,970,851	+				+0.7
3,970,919	+				+0.1
3,970,919	+				-0.3
3,970,920	-				-1.1
3,970,920	-				-1.5
3,970,928	+				+1.3
3,970,928	+				-1.0
3,970,928	+				+0.7
3,970,929	-				+2.3
3,970,929	-				-0.9
3,970,929	-				-1.3
3,970,929	-				+1.7
3,971,046	-		DZA65_RS18420	0.19	-0.4
3,971,164	+		DZA65_RS18420	0.32	+0.7
3,971,164	+		DZA65_RS18420	0.32	+0.9
3,971,164	+		DZA65_RS18420	0.32	-0.3
3,971,165	-		DZA65_RS18420	0.32	-1.0
3,971,165	-		DZA65_RS18420	0.32	+0.6
3,971,165	-		DZA65_RS18420	0.32	-0.2
3,971,245	+		DZA65_RS18420	0.41	+1.4
3,971,275	+		DZA65_RS18420	0.45	-1.6
3,971,275	+		DZA65_RS18420	0.45	+0.2
3,971,276	-		DZA65_RS18420	0.45	+0.3
3,971,288	+		DZA65_RS18420	0.46	-0.8
3,971,358	+		DZA65_RS18420	0.54	-0.0
3,971,358	+		DZA65_RS18420	0.54	+0.6
3,971,359	-				-0.9
3,971,436	+		DZA65_RS18420	0.63	+1.3
3,971,437	-		DZA65_RS18420	0.63	+1.1
3,971,501	+		DZA65_RS18420	0.70	-0.2
3,971,501	+		DZA65_RS18420	0.70	-1.5
3,971,501	+		DZA65_RS18420	0.70	+0.1
3,971,501	+		DZA65_RS18420	0.70	-0.0
3,971,502	-		DZA65_RS18420	0.70	+0.4