Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18310

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,949,378	+				+0.5
3,949,378	+				+0.7
3,949,423	+				+0.6
3,949,423	+				-0.6
3,949,423	+				-2.3
3,949,423	+				+0.2
3,949,423	+				+1.0
3,949,423	+				+1.1
3,949,424	-				-0.4
3,949,424	-				+0.4
3,949,424	-				-0.5
3,949,424	-				-0.4
3,949,562	+		DZA65_RS18300	0.31	-0.5
3,949,562	+		DZA65_RS18300	0.31	+1.1
3,949,562	+		DZA65_RS18300	0.31	-0.1
3,949,562	+		DZA65_RS18300	0.31	-0.0
3,949,562	+		DZA65_RS18300	0.31	-0.5
3,949,563	-		DZA65_RS18300	0.31	-1.5
3,949,563	-		DZA65_RS18300	0.31	+0.8
3,949,563	-		DZA65_RS18300	0.31	-1.6
3,949,563	-		DZA65_RS18300	0.31	+1.8
3,949,563	-				+0.7
3,949,563	-		DZA65_RS18300	0.31	-1.0
3,949,563	-		DZA65_RS18300	0.31	-0.9
3,949,592	+		DZA65_RS18300	0.36	-0.3
3,949,611	-		DZA65_RS18300	0.39	-0.5
3,949,611	-		DZA65_RS18300	0.39	+0.1
3,949,611	-		DZA65_RS18300	0.39	+0.2
3,949,611	-		DZA65_RS18300	0.39	+0.9
3,949,620	+		DZA65_RS18300	0.40	+0.2
3,949,620	+		DZA65_RS18300	0.40	-0.0
3,949,620	+		DZA65_RS18300	0.40	+0.7
3,949,620	+		DZA65_RS18300	0.40	-0.5
3,949,620	+		DZA65_RS18300	0.40	-1.0
3,949,620	+		DZA65_RS18300	0.40	-0.3
3,949,620	+		DZA65_RS18300	0.40	+0.4
3,949,620	+		DZA65_RS18300	0.40	+0.7
3,949,621	-		DZA65_RS18300	0.40	+2.0
3,949,621	-		DZA65_RS18300	0.40	-2.9
3,949,621	-		DZA65_RS18300	0.40	+0.5
3,949,621	-		DZA65_RS18300	0.40	-0.4
3,949,621	-		DZA65_RS18300	0.40	-0.9
3,949,621	-		DZA65_RS18300	0.40	-1.0
3,949,621	-		DZA65_RS18300	0.40	+0.3
3,949,621	-		DZA65_RS18300	0.40	-0.9
3,949,621	-		DZA65_RS18300	0.40	-0.1
3,949,621	-		DZA65_RS18300	0.40	+0.3
3,949,621	-		DZA65_RS18300	0.40	-1.6
3,949,621	-		DZA65_RS18300	0.40	+0.8
3,949,621	-		DZA65_RS18300	0.40	+0.3
3,949,621	-		DZA65_RS18300	0.40	+0.7
3,949,621	-		DZA65_RS18300	0.40	-0.9
3,949,680	+		DZA65_RS18300	0.49	-0.7
3,949,680	+		DZA65_RS18300	0.49	+0.8
3,949,680	+		DZA65_RS18300	0.49	+1.1
3,949,681	-		DZA65_RS18300	0.50	+0.2
3,949,681	-		DZA65_RS18300	0.50	-0.3
3,949,681	-		DZA65_RS18300	0.50	+0.1
3,949,681	-		DZA65_RS18300	0.50	+0.8
3,949,681	-		DZA65_RS18300	0.50	-1.3
3,949,681	-		DZA65_RS18300	0.50	+1.2
3,949,685	+		DZA65_RS18300	0.50	-0.5
3,949,685	+		DZA65_RS18300	0.50	-1.1
3,949,685	+		DZA65_RS18300	0.50	-0.7
3,949,735	+		DZA65_RS18300	0.58	-0.3
3,949,735	+		DZA65_RS18300	0.58	+1.7
3,949,736	-		DZA65_RS18300	0.58	-0.1
3,949,759	+		DZA65_RS18300	0.62	-1.0
3,949,767	-		DZA65_RS18300	0.63	+0.3
3,949,767	-		DZA65_RS18300	0.63	-0.9
3,949,781	+		DZA65_RS18300	0.65	-1.6
3,949,781	+		DZA65_RS18300	0.65	+0.2
3,949,781	+		DZA65_RS18300	0.65	-0.1
3,949,781	+		DZA65_RS18300	0.65	-2.1
3,949,781	+		DZA65_RS18300	0.65	-0.3
3,949,781	+		DZA65_RS18300	0.65	+1.7
3,949,781	+		DZA65_RS18300	0.65	+1.3
3,949,781	+		DZA65_RS18300	0.65	-2.5
3,949,781	+		DZA65_RS18300	0.65	-1.3
3,949,781	+		DZA65_RS18300	0.65	+0.0
3,949,781	+		DZA65_RS18300	0.65	-0.4
3,949,781	+		DZA65_RS18300	0.65	-0.1
3,949,782	-		DZA65_RS18300	0.65	-1.1
3,949,782	-		DZA65_RS18300	0.65	-0.2
3,949,782	-		DZA65_RS18300	0.65	+0.9
3,949,782	-		DZA65_RS18300	0.65	+1.8
3,949,782	-		DZA65_RS18300	0.65	+0.9
3,949,782	-		DZA65_RS18300	0.65	-0.3
3,949,782	-		DZA65_RS18300	0.65	+0.3
3,949,782	-		DZA65_RS18300	0.65	-0.6
3,949,782	-		DZA65_RS18300	0.65	-1.9
3,949,782	-		DZA65_RS18300	0.65	-2.3
3,949,782	-		DZA65_RS18300	0.65	+0.7
3,949,782	-		DZA65_RS18300	0.65	-0.5
3,949,782	-		DZA65_RS18300	0.65	+0.2
3,949,782	-		DZA65_RS18300	0.65	+2.0
3,949,782	-		DZA65_RS18300	0.65	+0.1
3,949,782	-		DZA65_RS18300	0.65	+2.5
3,949,782	-		DZA65_RS18300	0.65	-1.9
3,949,782	-		DZA65_RS18300	0.65	+0.4
3,949,823	+		DZA65_RS18300	0.72	+1.2
3,949,823	+		DZA65_RS18300	0.72	-0.3
3,949,824	-		DZA65_RS18300	0.72	-0.9
3,949,824	-		DZA65_RS18300	0.72	-0.4
3,949,824	-		DZA65_RS18300	0.72	+0.2
3,949,824	-		DZA65_RS18300	0.72	-0.9
3,949,824	-		DZA65_RS18300	0.72	-0.9
3,949,904	+		DZA65_RS18300	0.85	-0.1
3,949,905	-		DZA65_RS18300	0.85	-0.5
3,949,932	-		DZA65_RS18300	0.89	+0.5
3,949,932	-		DZA65_RS18300	0.89	+0.8
3,949,932	-		DZA65_RS18300	0.89	+0.4
3,949,955	+				+0.3
3,949,955	+				-0.3
3,949,955	+				+0.3
3,949,956	-				-0.2
3,950,016	+				-1.5
3,950,078	+				+0.5
3,950,078	+				+0.3
3,950,078	+				+0.6
3,950,078	+				-0.3
3,950,079	-				+0.7
3,950,091	-				+0.1
3,950,091	-				+0.4
3,950,244	+				+0.7
3,950,244	+				-0.6
3,950,244	+				-0.2
3,950,244	+				+0.3
3,950,244	+				+1.1
3,950,244	+				-0.0
3,950,244	+				+0.1
3,950,245	-				-1.0
3,950,245	-				-1.3
3,950,245	-				-1.0
3,950,245	-				-0.3
3,950,245	-				+0.2
3,950,245	-				-1.8
3,950,245	-				-0.9
3,950,246	+				-0.1
3,950,246	+				+1.0
3,950,246	+				+1.7
3,950,246	+				+0.5
3,950,247	-				-0.9
3,950,249	+				-0.2
3,950,249	+				+1.5
3,950,249	+				-1.3
3,950,250	-				-1.6
3,950,250	-				-0.9
3,950,306	+				-1.9
3,950,307	-				-1.1
3,950,307	-				-2.6
3,950,307	-				-0.6
3,950,601	-		DZA65_RS18310	0.19	-1.9
3,950,659	+		DZA65_RS18310	0.23	-1.6
3,950,728	+		DZA65_RS18310	0.28	-2.1
3,950,728	+		DZA65_RS18310	0.28	+0.1
3,950,728	+		DZA65_RS18310	0.28	-0.9
3,950,787	+		DZA65_RS18310	0.33	-0.3
3,950,890	+		DZA65_RS18310	0.41	+1.1
3,950,891	-		DZA65_RS18310	0.41	+0.3
3,950,891	-		DZA65_RS18310	0.41	-1.9
3,950,894	+		DZA65_RS18310	0.41	-0.9
3,950,894	+		DZA65_RS18310	0.41	-2.3
3,950,895	-		DZA65_RS18310	0.41	-1.9
3,950,895	-				-0.3
3,951,023	+		DZA65_RS18310	0.51	+2.7
3,951,024	-		DZA65_RS18310	0.51	-2.1
3,951,024	-		DZA65_RS18310	0.51	+1.0
3,951,024	-		DZA65_RS18310	0.51	-1.9
3,951,319	+				+0.7
3,951,320	-		DZA65_RS18310	0.73	-1.1
3,951,485	-		DZA65_RS18310	0.86	-1.3
3,951,489	-		DZA65_RS18310	0.86	-0.7
3,951,515	+		DZA65_RS18310	0.88	-0.5
3,951,515	+		DZA65_RS18310	0.88	+0.1
3,951,516	-		DZA65_RS18310	0.88	-2.9
3,951,516	-		DZA65_RS18310	0.88	-2.1
3,951,516	-		DZA65_RS18310	0.88	-1.9
3,951,516	-		DZA65_RS18310	0.88	+0.1
3,951,516	-		DZA65_RS18310	0.88	-1.1
3,951,568	+				-1.3
3,951,568	+				-1.9
3,951,569	-				-1.1
3,951,695	+				-0.9
3,951,695	+				-0.5
3,951,695	+				-0.3
3,951,695	+				+0.6
3,951,695	+				+1.7
3,951,696	-				-2.2
3,951,696	-				-0.4
3,951,710	+				-0.5
3,951,711	-				-0.9
3,951,717	-				-0.4
3,951,717	-				-0.8
3,951,717	-				-0.3
3,951,729	+				-0.9
3,951,748	+				+0.7
3,951,748	+				+1.1
3,951,748	+				-0.2
3,951,749	-				-1.4
3,951,749	-				+0.3
3,951,749	-				-0.7
3,951,749	-				+0.1
3,951,751	+				-1.2
3,951,751	+				-0.8
3,951,752	-				+0.2
3,951,754	+				+0.2
3,951,767	+				-0.5
3,951,767	+				+0.1
3,951,767	+				-0.0
3,951,767	+				+0.1
3,951,768	-				-0.6
3,951,768	-				-0.5
3,951,768	-				-0.5
3,951,770	+				-0.4
3,951,771	-				+1.1
3,951,773	+				+0.1
3,951,774	-				-0.7
3,951,774	-				-0.1
3,951,786	+				-0.3
3,951,787	-				+0.7
3,951,787	-				-0.8
3,951,787	-				-0.5
3,951,803	-				+0.3
3,951,803	-				+2.1
3,951,865	-		DZA65_RS18315	0.14	+0.4
3,951,865	-		DZA65_RS18315	0.14	-0.5
3,951,905	+		DZA65_RS18315	0.33	-1.6
3,951,905	+		DZA65_RS18315	0.33	+0.7
3,951,905	+		DZA65_RS18315	0.33	+1.2
3,951,905	+		DZA65_RS18315	0.33	+1.7
3,951,906	-		DZA65_RS18315	0.33	+1.5
3,951,906	-		DZA65_RS18315	0.33	+0.1
3,951,965	+		DZA65_RS18315	0.62	+2.4
3,951,966	-		DZA65_RS18315	0.62	+1.5
3,951,970	+		DZA65_RS18315	0.64	-0.2
3,951,970	+		DZA65_RS18315	0.64	-2.8
3,951,970	+		DZA65_RS18315	0.64	+2.1
3,951,970	+		DZA65_RS18315	0.64	-0.2
3,951,970	+		DZA65_RS18315	0.64	-1.0
3,951,970	+		DZA65_RS18315	0.64	-0.0
3,951,970	+		DZA65_RS18315	0.64	-0.5
3,951,971	-		DZA65_RS18315	0.65	+0.7
3,951,971	-		DZA65_RS18315	0.65	-0.1
3,951,971	-		DZA65_RS18315	0.65	+1.4
3,951,971	-		DZA65_RS18315	0.65	-0.1
3,951,971	-		DZA65_RS18315	0.65	-0.0
3,951,971	-		DZA65_RS18315	0.65	-0.0
3,951,971	-		DZA65_RS18315	0.65	+0.5
3,951,971	-		DZA65_RS18315	0.65	+0.2
3,951,971	-		DZA65_RS18315	0.65	+0.1
3,951,971	-		DZA65_RS18315	0.65	-1.6
3,951,971	-				+0.3
3,951,971	-		DZA65_RS18315	0.65	-0.5
3,952,000	+		DZA65_RS18315	0.79	-0.4
3,952,000	+		DZA65_RS18315	0.79	-0.1
3,952,000	+		DZA65_RS18315	0.79	+0.5
3,952,000	+		DZA65_RS18315	0.79	-1.0
3,952,000	+		DZA65_RS18315	0.79	-0.7
3,952,000	+		DZA65_RS18315	0.79	-2.4
3,952,001	-		DZA65_RS18315	0.79	-0.9
3,952,001	-		DZA65_RS18315	0.79	+0.4
3,952,001	-		DZA65_RS18315	0.79	+2.6
3,952,001	-		DZA65_RS18315	0.79	+1.0
3,952,001	-		DZA65_RS18315	0.79	+1.1
3,952,001	-		DZA65_RS18315	0.79	-0.1
3,952,024	+				+0.3
3,952,024	+				-0.7
3,952,024	+				+0.7
3,952,025	-				+0.1
3,952,025	-				+1.3
3,952,025	-				-2.2
3,952,025	-				+0.1
3,952,025	-				+0.8
3,952,125	+				-1.0
3,952,126	-				-0.2
3,952,126	-				-0.1
3,952,126	-				-1.2
3,952,131	+				+0.9
3,952,131	+				+1.7
3,952,131	+				+1.1
3,952,132	-				+0.7
3,952,132	-				+0.6
3,952,132	-				+0.3
3,952,144	+				+0.1
3,952,144	+				-0.9
3,952,144	+				+1.6
3,952,144	+				+0.4
3,952,144	+				-1.1
3,952,144	+				-0.3
3,952,144	+				+1.4
3,952,144	+				+0.3
3,952,144	+				+1.0
3,952,145	-				+0.5
3,952,145	-				+1.4
3,952,145	-				+0.3
3,952,145	-				-0.1
3,952,145	-				+0.1
3,952,145	-				+0.4
3,952,145	-				-1.5
3,952,145	-				+1.3
3,952,145	-				+0.0
3,952,147	+				+1.0
3,952,147	+				-0.2
3,952,147	+				+0.2
3,952,147	+				+0.3
3,952,148	-				-0.0
3,952,148	-				+0.1
3,952,148	-				+0.4
3,952,148	-				+0.6
3,952,148	-				+1.3
3,952,148	-				+0.5
3,952,148	-				-0.7
3,952,148	-				-1.2
3,952,148	-				+0.4
3,952,148	-				+0.1
3,952,162	+				-1.6
3,952,162	+				+0.4
3,952,162	+				+0.9
3,952,162	+				-0.1
3,952,162	+				-0.0
3,952,162	+				+0.1
3,952,163	-				-0.1
3,952,163	-				+0.0
3,952,163	-				+0.4
3,952,166	-				+0.5
3,952,166	-				-0.9
3,952,180	+				+0.2
3,952,180	+				-0.9
3,952,180	+				+0.8
3,952,180	+				-0.7
3,952,180	+				-0.6
3,952,180	+				+0.7
3,952,181	-				-0.4
3,952,181	-				+0.0
3,952,181	-				-2.1
3,952,183	+				+2.1
3,952,183	+				-0.0
3,952,183	+				+0.3
3,952,184	-				-0.5
3,952,198	+				+0.0
3,952,198	+				-0.7
3,952,198	+				+1.3
3,952,198	+				+0.9
3,952,199	-				+0.1
3,952,250	-				-0.1
3,952,253	+				+0.4
3,952,263	-				+0.3
3,952,284	+				-0.4
3,952,285	-				+0.2
3,952,310	-				+0.7
3,952,323	-				-0.6
3,952,341	+				+1.5
3,952,341	+				+0.2
3,952,341	+				+0.7
3,952,341	+				+0.9
3,952,342	-				-0.6
3,952,342	-				+0.4
3,952,342	-				-0.7
3,952,348	+				-0.3
3,952,348	+				+0.4
3,952,348	+				-0.3
3,952,348	+				-0.2
3,952,371	+				+0.1
3,952,371	+				-0.8
3,952,372	-				-2.4
3,952,372	-				-0.3
3,952,372	-				-0.5
3,952,403	-				+0.7
3,952,444	+				-0.0
3,952,444	+				+0.2
3,952,444	+				+0.7
3,952,444	+				+0.7
3,952,444	+				+1.3
3,952,444	+				+1.5
3,952,445	-				+0.2
3,952,445	-				+1.3
3,952,494	+				-0.8
3,952,495	-				-0.1
3,952,587	+				-0.5
3,952,587	+				-0.9