Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,914,342	+		DZA65_RS18160	0.66	+0.7
3,914,343	-		DZA65_RS18160	0.66	-2.5
3,914,396	-		DZA65_RS18160	0.71	-0.9
3,914,721	+				-1.3
3,914,729	+				-0.3
3,914,769	-				-0.5
3,914,769	-				+2.1
3,914,780	-				-0.5
3,914,797	+				-1.5
3,914,798	-				+0.6
3,914,798	-				-0.8
3,914,815	-				-0.7
3,914,815	-				+0.9
3,914,920	-				+0.1
3,915,006	-				+0.5
3,915,009	+				-0.6
3,915,009	+				-1.3
3,915,009	+				-0.8
3,915,010	-				+0.1
3,915,042	+				-1.1
3,915,043	-				-0.9
3,915,045	+				-1.1
3,915,045	+				+0.2
3,915,046	-				+0.2
3,915,157	+		DZA65_RS18165	0.17	+0.7
3,915,158	-		DZA65_RS18165	0.17	+0.2
3,915,158	-		DZA65_RS18165	0.17	-1.7
3,915,158	-		DZA65_RS18165	0.17	+0.2
3,915,288	+		DZA65_RS18165	0.32	-2.1
3,915,288	+		DZA65_RS18165	0.32	-1.6
3,915,289	-		DZA65_RS18165	0.32	-0.2
3,915,289	-		DZA65_RS18165	0.32	-0.3
3,915,289	-		DZA65_RS18165	0.32	-0.3
3,915,289	-		DZA65_RS18165	0.32	+0.7
3,915,289	-		DZA65_RS18165	0.32	+1.2
3,915,388	+		DZA65_RS18165	0.43	-1.3
3,915,388	+		DZA65_RS18165	0.43	-1.7
3,915,419	+		DZA65_RS18165	0.46	-1.7
3,915,420	-		DZA65_RS18165	0.47	-0.8
3,915,420	-		DZA65_RS18165	0.47	-0.2
3,915,453	+		DZA65_RS18165	0.50	-0.9
3,915,453	+		DZA65_RS18165	0.50	-1.7
3,915,453	+		DZA65_RS18165	0.50	-1.9
3,915,453	+		DZA65_RS18165	0.50	-3.6
3,915,453	+		DZA65_RS18165	0.50	-0.3
3,915,454	-		DZA65_RS18165	0.50	+0.1
3,915,454	-		DZA65_RS18165	0.50	+0.7
3,915,454	-		DZA65_RS18165	0.50	-0.1
3,915,454	-		DZA65_RS18165	0.50	+1.1
3,915,457	+		DZA65_RS18165	0.51	-1.9
3,915,457	+		DZA65_RS18165	0.51	-2.7
3,915,457	+		DZA65_RS18165	0.51	-2.7
3,915,457	+		DZA65_RS18165	0.51	-1.0
3,915,457	+		DZA65_RS18165	0.51	-2.0
3,915,458	-		DZA65_RS18165	0.51	+1.2
3,915,458	-				+1.2
3,915,458	-		DZA65_RS18165	0.51	-1.7
3,915,458	-		DZA65_RS18165	0.51	+0.2
3,915,502	+		DZA65_RS18165	0.56	-1.5
3,915,502	+		DZA65_RS18165	0.56	-2.9
3,915,620	+		DZA65_RS18165	0.69	-2.3
3,915,620	+		DZA65_RS18165	0.69	-1.7
3,915,621	-		DZA65_RS18165	0.69	-0.9
3,915,671	+		DZA65_RS18165	0.75	+0.7
3,915,671	+		DZA65_RS18165	0.75	-0.3
3,915,671	+		DZA65_RS18165	0.75	-1.9
3,915,709	+		DZA65_RS18165	0.79	+0.2
3,915,709	+		DZA65_RS18165	0.79	-2.2
3,915,710	-		DZA65_RS18165	0.79	-0.0
3,915,710	-		DZA65_RS18165	0.79	-0.6
3,915,710	-		DZA65_RS18165	0.79	-0.7
3,915,710	-		DZA65_RS18165	0.79	+0.1
3,915,710	-		DZA65_RS18165	0.79	-2.1
3,915,776	+		DZA65_RS18165	0.87	-2.9
3,915,777	-		DZA65_RS18165	0.87	-0.1
3,915,777	-		DZA65_RS18165	0.87	+0.3
3,915,777	-		DZA65_RS18165	0.87	-0.9
3,915,777	-		DZA65_RS18165	0.87	-1.5
3,915,822	+				-0.9
3,915,822	+				+1.0
3,915,865	+				-0.7
3,915,877	+				-1.7
3,915,878	-				+0.0
3,915,878	-				+1.2
3,915,878	-				+0.9
3,915,878	-				-0.4
3,915,931	+				-1.2
3,915,931	+				+0.0
3,915,931	+				-0.2
3,915,931	+				-1.7
3,915,931	+				-0.2
3,915,931	+				+0.7
3,915,932	-				-0.5
3,915,932	-				+0.9
3,915,932	-				-0.3
3,915,932	-				-0.9
3,915,932	-				+0.3
3,915,932	-				-1.9
3,915,932	-				-0.8
3,915,932	-				+0.7
3,915,932	-				-0.3
3,915,969	-				-0.3
3,916,030	+				-0.7
3,916,030	+				+0.4
3,916,031	-				+1.0
3,916,031	-				+0.1
3,916,031	-				+0.7
3,916,061	+		DZA65_RS18170	0.12	-0.9
3,916,182	-		DZA65_RS18170	0.28	+0.2
3,916,282	+		DZA65_RS18170	0.41	-2.8
3,916,282	+		DZA65_RS18170	0.41	-1.8
3,916,282	+		DZA65_RS18170	0.41	-0.5
3,916,282	+		DZA65_RS18170	0.41	-1.8
3,916,282	+		DZA65_RS18170	0.41	-1.0
3,916,282	+		DZA65_RS18170	0.41	-0.5
3,916,283	-		DZA65_RS18170	0.41	+0.1
3,916,325	+		DZA65_RS18170	0.46	-0.2
3,916,325	+		DZA65_RS18170	0.46	+0.3
3,916,325	+		DZA65_RS18170	0.46	+0.2
3,916,325	+		DZA65_RS18170	0.46	+1.4
3,916,325	+		DZA65_RS18170	0.46	+0.4
3,916,325	+		DZA65_RS18170	0.46	+0.2
3,916,325	+		DZA65_RS18170	0.46	-0.6
3,916,326	-		DZA65_RS18170	0.47	+0.1
3,916,326	-		DZA65_RS18170	0.47	-1.9
3,916,326	-		DZA65_RS18170	0.47	-1.3
3,916,326	-		DZA65_RS18170	0.47	+0.7
3,916,344	-		DZA65_RS18170	0.49	+0.1
3,916,461	-		DZA65_RS18170	0.64	-1.1
3,916,485	+		DZA65_RS18170	0.67	-0.4
3,916,485	+		DZA65_RS18170	0.67	+0.2
3,916,485	+		DZA65_RS18170	0.67	+0.5
3,916,485	+		DZA65_RS18170	0.67	+0.7
3,916,486	-		DZA65_RS18170	0.67	+1.0
3,916,486	-		DZA65_RS18170	0.67	-0.9
3,916,486	-		DZA65_RS18170	0.67	+0.3
3,916,486	-		DZA65_RS18170	0.67	+0.7
3,916,486	-		DZA65_RS18170	0.67	+0.3
3,916,486	-		DZA65_RS18170	0.67	-0.9
3,916,503	+		DZA65_RS18170	0.70	-2.1
3,916,503	+		DZA65_RS18170	0.70	+0.1
3,916,503	+		DZA65_RS18170	0.70	+1.1
3,916,504	-		DZA65_RS18170	0.70	+0.9
3,916,563	+		DZA65_RS18170	0.77	+1.1
3,916,563	+		DZA65_RS18170	0.77	-1.1
3,916,564	-		DZA65_RS18170	0.77	-2.3
3,916,633	+		DZA65_RS18170	0.86	-0.4
3,916,633	+		DZA65_RS18170	0.86	-0.9
3,916,634	-		DZA65_RS18170	0.87	-0.1
3,916,634	-		DZA65_RS18170	0.87	-0.6
3,916,696	+				+0.1
3,916,696	+				+0.7
3,916,696	+				-0.6
3,916,697	-				+0.2
3,916,748	+				+0.7
3,916,749	-				+0.2
3,916,749	-				+0.7
3,916,755	+				-0.6
3,916,756	-				+1.7
3,916,787	+				-0.1
3,916,787	+				+0.4
3,916,787	+				-0.2
3,916,787	+				-1.9
3,916,787	+				-0.1
3,916,787	+				+0.3
3,916,787	+				+2.2
3,916,788	-				+1.5
3,916,788	-				+0.2
3,916,788	-				+0.0
3,916,788	-				+1.0
3,916,788	-				+0.7
3,916,791	+				+0.3
3,916,791	+				-2.0
3,916,792	-				-1.5
3,916,799	+				+0.4
3,916,799	+				+0.2
3,916,799	+				-0.1
3,916,799	+				-0.6
3,916,800	-				+1.0
3,916,804	+				+0.8
3,916,804	+				-0.1
3,916,805	-				-1.9
3,916,805	-				+0.7
3,916,808	+				-0.2
3,916,809	-				-1.7
3,916,809	-				-2.1
3,916,820	+				+0.2
3,916,820	+				+0.7
3,916,821	-				+1.1
3,916,821	-				+1.0
3,916,836	+				+1.1
3,916,837	-				-1.1
3,916,837	-				-1.3
3,916,840	+				-0.9