Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,863,500	+				-1.4
3,863,501	-				+1.3
3,863,532	+				-0.3
3,863,560	+				+0.9
3,863,560	+				-0.1
3,863,560	+				-0.2
3,863,560	+				+0.4
3,863,561	-				+1.4
3,863,561	-				+0.2
3,863,563	+				-0.4
3,863,563	+				+0.1
3,863,563	+				-2.4
3,863,564	-				+1.0
3,863,564	-				+0.4
3,863,635	+				-0.8
3,863,635	+				-0.1
3,863,635	+				+3.1
3,863,635	+				+0.0
3,863,635	+				-0.0
3,863,636	-				+1.6
3,863,636	-				+0.5
3,863,636	-				+0.0
3,863,638	+				-1.0
3,863,638	+				-2.0
3,863,639	-				+0.1
3,863,639	-				+1.6
3,863,639	-				-0.6
3,863,639	-				-0.9
3,863,639	-				-0.3
3,863,639	-				-0.7
3,863,639	-				-1.2
3,863,731	+		DZA65_RS17940	0.35	-0.7
3,863,732	-		DZA65_RS17940	0.35	+0.4
3,863,838	+		DZA65_RS17940	0.68	-1.0
3,863,838	+		DZA65_RS17940	0.68	-1.0
3,863,838	+		DZA65_RS17940	0.68	+0.2
3,863,839	-		DZA65_RS17940	0.68	-1.4
3,863,839	-		DZA65_RS17940	0.68	+0.6
3,863,839	-		DZA65_RS17940	0.68	-0.4
3,863,859	-		DZA65_RS17940	0.74	-1.4
3,863,921	-				-0.5
3,863,921	-				-0.5
3,863,921	-				-0.0
3,863,921	-				-0.6
3,863,941	-				-1.2
3,864,015	+				+0.7
3,864,015	+				+0.2
3,864,015	+				+0.7
3,864,015	+				-0.1
3,864,015	+				+0.6
3,864,015	+				-0.7
3,864,015	+				+1.5
3,864,015	+				+0.4
3,864,016	-				+0.6
3,864,016	-				+0.3
3,864,016	-				-0.7
3,864,066	+				+1.6
3,864,066	+				-0.4
3,864,066	+				+1.1
3,864,066	+				+0.0
3,864,066	+				-1.2
3,864,067	-				-0.0
3,864,067	-				-0.7
3,864,067	-				-0.3
3,864,067	-				-1.2
3,864,067	-				-0.4
3,864,067	-				-2.0
3,864,067	-				+1.7
3,864,105	+		DZA65_RS17945	0.13	+1.4
3,864,105	+		DZA65_RS17945	0.13	-1.5
3,864,105	+		DZA65_RS17945	0.13	+3.8
3,864,105	+		DZA65_RS17945	0.13	-0.1
3,864,106	-		DZA65_RS17945	0.13	+0.9
3,864,106	-		DZA65_RS17945	0.13	+0.8
3,864,106	-		DZA65_RS17945	0.13	+1.4
3,864,106	-		DZA65_RS17945	0.13	+0.6
3,864,106	-		DZA65_RS17945	0.13	+1.2
3,864,131	+		DZA65_RS17945	0.15	-1.7
3,864,132	-		DZA65_RS17945	0.15	+0.1
3,864,178	+		DZA65_RS17945	0.18	+1.8
3,864,180	+				-1.0
3,864,180	+		DZA65_RS17945	0.19	+0.0
3,864,180	+		DZA65_RS17945	0.19	+0.6
3,864,180	+		DZA65_RS17945	0.19	-1.4
3,864,180	+		DZA65_RS17945	0.19	+0.5
3,864,181	-		DZA65_RS17945	0.19	+2.0
3,864,181	-		DZA65_RS17945	0.19	-0.7
3,864,239	+		DZA65_RS17945	0.23	-0.7
3,864,433	-		DZA65_RS17945	0.38	-0.7
3,864,433	-		DZA65_RS17945	0.38	-1.7
3,864,433	-		DZA65_RS17945	0.38	+0.1
3,864,433	-		DZA65_RS17945	0.38	+2.1
3,864,442	+		DZA65_RS17945	0.39	-0.3
3,864,442	+		DZA65_RS17945	0.39	-0.7
3,864,442	+		DZA65_RS17945	0.39	+0.2
3,864,443	-		DZA65_RS17945	0.39	+0.7
3,864,443	-		DZA65_RS17945	0.39	-0.4
3,864,443	-		DZA65_RS17945	0.39	-0.2
3,864,444	+				+0.6
3,864,444	+		DZA65_RS17945	0.39	-0.7
3,864,444	+		DZA65_RS17945	0.39	-0.5
3,864,444	+		DZA65_RS17945	0.39	+0.2
3,864,444	+		DZA65_RS17945	0.39	+0.2
3,864,444	+		DZA65_RS17945	0.39	-0.0
3,864,444	+		DZA65_RS17945	0.39	+0.0
3,864,444	+		DZA65_RS17945	0.39	+0.6
3,864,444	+		DZA65_RS17945	0.39	-0.4
3,864,444	+		DZA65_RS17945	0.39	-1.1
3,864,444	+		DZA65_RS17945	0.39	+1.0
3,864,444	+		DZA65_RS17945	0.39	+0.6
3,864,444	+		DZA65_RS17945	0.39	-0.7
3,864,444	+		DZA65_RS17945	0.39	-0.4
3,864,445	-		DZA65_RS17945	0.39	+1.1
3,864,445	-		DZA65_RS17945	0.39	+1.2
3,864,445	-		DZA65_RS17945	0.39	+0.2
3,864,445	-		DZA65_RS17945	0.39	-0.4
3,864,445	-		DZA65_RS17945	0.39	-0.9
3,864,445	-		DZA65_RS17945	0.39	-0.9
3,864,445	-		DZA65_RS17945	0.39	-0.4
3,864,445	-		DZA65_RS17945	0.39	-0.5
3,864,445	-		DZA65_RS17945	0.39	+0.4
3,864,445	-		DZA65_RS17945	0.39	-1.9
3,864,445	-		DZA65_RS17945	0.39	-0.6
3,864,445	-		DZA65_RS17945	0.39	+0.5
3,864,445	-		DZA65_RS17945	0.39	-0.1
3,864,445	-		DZA65_RS17945	0.39	-1.5
3,864,445	-		DZA65_RS17945	0.39	+1.0
3,864,445	-		DZA65_RS17945	0.39	-0.5
3,864,445	-		DZA65_RS17945	0.39	+0.5
3,864,445	-		DZA65_RS17945	0.39	+0.6
3,864,445	-		DZA65_RS17945	0.39	-0.3
3,864,445	-		DZA65_RS17945	0.39	-2.2
3,864,445	-		DZA65_RS17945	0.39	-0.7
3,864,445	-		DZA65_RS17945	0.39	+0.3
3,864,445	-		DZA65_RS17945	0.39	+0.1
3,864,453	+		DZA65_RS17945	0.40	-1.8
3,864,453	+		DZA65_RS17945	0.40	-2.4
3,864,453	+		DZA65_RS17945	0.40	+1.6
3,864,453	+		DZA65_RS17945	0.40	+0.9
3,864,453	+		DZA65_RS17945	0.40	+0.2
3,864,453	+		DZA65_RS17945	0.40	-0.5
3,864,453	+		DZA65_RS17945	0.40	+1.4
3,864,453	+		DZA65_RS17945	0.40	-1.5
3,864,453	+		DZA65_RS17945	0.40	+2.0
3,864,453	+		DZA65_RS17945	0.40	+0.6
3,864,454	-		DZA65_RS17945	0.40	+0.5
3,864,454	-		DZA65_RS17945	0.40	+0.3
3,864,454	-		DZA65_RS17945	0.40	+0.6
3,864,454	-		DZA65_RS17945	0.40	+1.4
3,864,454	-		DZA65_RS17945	0.40	+1.5
3,864,454	-		DZA65_RS17945	0.40	-0.2
3,864,454	-		DZA65_RS17945	0.40	+0.3
3,864,454	-		DZA65_RS17945	0.40	-0.6
3,864,454	-		DZA65_RS17945	0.40	-0.0
3,864,457	+		DZA65_RS17945	0.40	-0.4
3,864,457	+		DZA65_RS17945	0.40	+0.1
3,864,457	+		DZA65_RS17945	0.40	-2.2
3,864,457	+		DZA65_RS17945	0.40	+2.4
3,864,458	-		DZA65_RS17945	0.40	-0.2
3,864,458	-		DZA65_RS17945	0.40	-0.0
3,864,458	-		DZA65_RS17945	0.40	+0.4
3,864,459	+		DZA65_RS17945	0.40	-1.1
3,864,459	+		DZA65_RS17945	0.40	-0.8
3,864,459	+		DZA65_RS17945	0.40	+0.2
3,864,459	+		DZA65_RS17945	0.40	+0.6
3,864,459	+		DZA65_RS17945	0.40	+0.0
3,864,460	-		DZA65_RS17945	0.40	+0.1
3,864,460	-		DZA65_RS17945	0.40	+0.5
3,864,460	-		DZA65_RS17945	0.40	-0.3
3,864,460	-		DZA65_RS17945	0.40	-0.4
3,864,460	-		DZA65_RS17945	0.40	-0.7
3,864,484	+		DZA65_RS17945	0.42	+0.6
3,864,524	+		DZA65_RS17945	0.45	+0.5
3,864,524	+		DZA65_RS17945	0.45	-1.1
3,864,584	-		DZA65_RS17945	0.50	-0.4
3,864,584	-		DZA65_RS17945	0.50	-0.7
3,864,630	-		DZA65_RS17945	0.53	+1.6
3,864,658	+		DZA65_RS17945	0.55	+0.6
3,864,659	-		DZA65_RS17945	0.55	-0.0
3,864,659	-		DZA65_RS17945	0.55	-0.6
3,864,689	+		DZA65_RS17945	0.58	+1.5
3,864,689	+		DZA65_RS17945	0.58	-0.2
3,864,689	+		DZA65_RS17945	0.58	+0.3
3,864,690	-		DZA65_RS17945	0.58	+0.6
3,864,716	+		DZA65_RS17945	0.60	+0.5
3,864,717	-		DZA65_RS17945	0.60	+0.6
3,864,717	-		DZA65_RS17945	0.60	-0.5
3,864,737	+		DZA65_RS17945	0.61	+0.3
3,864,737	+		DZA65_RS17945	0.61	+0.2
3,864,737	+		DZA65_RS17945	0.61	-0.7
3,864,737	+		DZA65_RS17945	0.61	-0.0
3,864,737	+		DZA65_RS17945	0.61	-0.4
3,864,738	-		DZA65_RS17945	0.62	-0.4
3,864,738	-		DZA65_RS17945	0.62	+0.9
3,864,738	-		DZA65_RS17945	0.62	-0.4
3,864,738	-		DZA65_RS17945	0.62	-1.9
3,864,738	-		DZA65_RS17945	0.62	+0.8
3,864,738	-		DZA65_RS17945	0.62	-0.0
3,864,738	-		DZA65_RS17945	0.62	+0.2
3,864,738	-		DZA65_RS17945	0.62	-1.7
3,864,738	-		DZA65_RS17945	0.62	-0.2
3,864,738	-		DZA65_RS17945	0.62	+0.3
3,864,741	+		DZA65_RS17945	0.62	+0.3
3,864,742	-		DZA65_RS17945	0.62	+0.4
3,864,742	-		DZA65_RS17945	0.62	-0.1
3,864,756	+		DZA65_RS17945	0.63	-0.1
3,864,756	+		DZA65_RS17945	0.63	+0.0
3,864,756	+		DZA65_RS17945	0.63	-0.1
3,864,756	+		DZA65_RS17945	0.63	-1.4
3,864,756	+		DZA65_RS17945	0.63	+0.9
3,864,757	-		DZA65_RS17945	0.63	-0.2
3,864,757	-		DZA65_RS17945	0.63	-0.1
3,864,757	-		DZA65_RS17945	0.63	+1.4
3,864,757	-		DZA65_RS17945	0.63	-0.1
3,864,766	+		DZA65_RS17945	0.64	-2.1
3,864,767	-		DZA65_RS17945	0.64	+0.1
3,864,795	+		DZA65_RS17945	0.66	-0.5
3,864,795	+		DZA65_RS17945	0.66	-0.1
3,864,795	+		DZA65_RS17945	0.66	+0.5
3,864,795	+		DZA65_RS17945	0.66	-0.6
3,864,795	+		DZA65_RS17945	0.66	+1.2
3,864,795	+		DZA65_RS17945	0.66	-0.7
3,864,795	+		DZA65_RS17945	0.66	+0.9
3,864,795	+		DZA65_RS17945	0.66	-0.4
3,864,795	+		DZA65_RS17945	0.66	+0.6
3,864,796	-		DZA65_RS17945	0.66	-0.5
3,864,796	-		DZA65_RS17945	0.66	-1.4
3,864,796	-		DZA65_RS17945	0.66	-0.2
3,864,796	-		DZA65_RS17945	0.66	+3.1
3,864,796	-		DZA65_RS17945	0.66	+0.3
3,864,796	-		DZA65_RS17945	0.66	-0.4
3,864,796	-				+0.1
3,864,796	-		DZA65_RS17945	0.66	-0.7
3,864,796	-		DZA65_RS17945	0.66	+0.5
3,864,796	-		DZA65_RS17945	0.66	-0.9
3,864,813	+		DZA65_RS17945	0.67	+1.2
3,864,851	+		DZA65_RS17945	0.70	+0.1
3,864,851	+		DZA65_RS17945	0.70	+0.2
3,864,852	-		DZA65_RS17945	0.70	-0.1
3,864,852	-		DZA65_RS17945	0.70	+2.0
3,864,852	-		DZA65_RS17945	0.70	+0.5
3,864,852	-		DZA65_RS17945	0.70	+0.1
3,864,857	+		DZA65_RS17945	0.71	+2.1
3,864,857	+		DZA65_RS17945	0.71	+0.3
3,864,915	-		DZA65_RS17945	0.75	+0.1
3,864,934	+		DZA65_RS17945	0.77	-0.2
3,864,934	+		DZA65_RS17945	0.77	+1.6
3,864,934	+		DZA65_RS17945	0.77	+0.9
3,864,934	+		DZA65_RS17945	0.77	-1.4
3,864,934	+		DZA65_RS17945	0.77	+0.2
3,864,934	+		DZA65_RS17945	0.77	+1.4
3,864,934	+		DZA65_RS17945	0.77	+0.4
3,864,935	-		DZA65_RS17945	0.77	-1.1
3,864,935	-		DZA65_RS17945	0.77	-0.4
3,864,935	-		DZA65_RS17945	0.77	+0.7
3,864,935	-		DZA65_RS17945	0.77	+0.5
3,864,935	-		DZA65_RS17945	0.77	-0.7
3,864,935	-		DZA65_RS17945	0.77	-0.1
3,864,935	-		DZA65_RS17945	0.77	-0.9
3,864,935	-		DZA65_RS17945	0.77	+1.0
3,864,935	-		DZA65_RS17945	0.77	-0.5