Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,521,325	+		DZA65_RS16230	0.33	+0.1
3,521,383	-		DZA65_RS16230	0.40	+0.2
3,521,388	+		DZA65_RS16230	0.41	+0.1
3,521,388	+		DZA65_RS16230	0.41	+0.9
3,521,388	+		DZA65_RS16230	0.41	+0.3
3,521,390	+		DZA65_RS16230	0.41	-1.1
3,521,390	+		DZA65_RS16230	0.41	-0.1
3,521,420	+		DZA65_RS16230	0.44	-0.1
3,521,451	-		DZA65_RS16230	0.48	-0.7
3,521,463	+		DZA65_RS16230	0.49	-2.5
3,521,638	-		DZA65_RS16230	0.70	+1.1
3,521,638	-		DZA65_RS16230	0.70	-0.3
3,521,639	+		DZA65_RS16230	0.70	-2.1
3,521,639	+		DZA65_RS16230	0.70	+0.1
3,521,640	-		DZA65_RS16230	0.70	+0.5
3,521,640	-		DZA65_RS16230	0.70	+0.3
3,521,640	-		DZA65_RS16230	0.70	-0.1
3,521,679	+		DZA65_RS16230	0.75	-0.5
3,521,679	+		DZA65_RS16230	0.75	+0.7
3,521,679	+		DZA65_RS16230	0.75	-0.5
3,521,680	-		DZA65_RS16230	0.75	-1.5
3,521,680	-		DZA65_RS16230	0.75	+2.1
3,521,707	-		DZA65_RS16230	0.78	+0.3
3,521,719	-		DZA65_RS16230	0.79	-1.3
3,521,757	+		DZA65_RS16230	0.84	-0.1
3,521,758	-		DZA65_RS16230	0.84	-1.1
3,521,758	-		DZA65_RS16230	0.84	+0.2
3,521,766	+		DZA65_RS16230	0.85	-0.5
3,521,766	+		DZA65_RS16230	0.85	-0.5
3,521,766	+		DZA65_RS16230	0.85	+0.8
3,521,767	-		DZA65_RS16230	0.85	-2.1
3,521,768	+		DZA65_RS16230	0.85	-0.5
3,521,768	+		DZA65_RS16230	0.85	+0.1
3,521,768	+		DZA65_RS16230	0.85	+0.0
3,521,768	+		DZA65_RS16230	0.85	+0.8
3,521,768	+		DZA65_RS16230	0.85	-1.2
3,521,768	+		DZA65_RS16230	0.85	-1.8
3,521,769	-		DZA65_RS16230	0.85	+0.4
3,521,769	-		DZA65_RS16230	0.85	-2.5
3,521,790	+		DZA65_RS16230	0.88	-0.3
3,521,859	+				-0.2
3,521,860	-				+0.4
3,521,860	-				-0.1
3,521,860	-				+0.9
3,521,863	+				-0.8
3,521,891	+				+0.6
3,521,891	+				-0.1
3,521,891	+				-0.4
3,521,891	+				+1.0
3,521,892	-				+0.7
3,521,892	-				+0.1
3,521,895	+				+3.5
3,521,895	+				-1.6
3,521,895	+				-0.7
3,521,895	+				-1.5
3,521,895	+				-0.4
3,521,896	-				-1.0
3,521,896	-				+0.4
3,521,896	-				+0.9
3,521,896	-				+0.5
3,521,909	+				+0.1
3,521,945	+				+0.5
3,521,946	-				+0.2
3,521,946	-				+0.4
3,522,024	-				-1.2
3,522,106	+				+1.8
3,522,106	+				-1.1
3,522,124	+				-0.9
3,522,155	+				-0.7
3,522,159	+				+0.1
3,522,159	+				-1.1
3,522,159	+				+0.8
3,522,159	+				+1.8
3,522,159	+				-0.3
3,522,160	-				-0.2
3,522,160	-				+0.5
3,522,189	-				+0.4
3,522,189	-				+0.5
3,522,193	+				-0.5
3,522,193	+				-2.1
3,522,193	+				+0.8
3,522,193	+				+0.1
3,522,193	+				+0.5
3,522,194	-				+0.1
3,522,194	-				-0.2
3,522,194	-				+0.2
3,522,267	-				+1.3
3,522,269	+				+0.2
3,522,269	+				-2.1
3,522,313	-				+1.1
3,522,313	-				+0.7
3,522,345	-				+1.1
3,522,593	-		DZA65_RS16235	0.33	+0.0
3,522,773	+		DZA65_RS16235	0.55	-0.5
3,522,773	+		DZA65_RS16235	0.55	-1.4
3,522,837	+		DZA65_RS16235	0.63	-0.5
3,522,837	+		DZA65_RS16235	0.63	-0.2
3,522,837	+		DZA65_RS16235	0.63	+0.7
3,522,837	+		DZA65_RS16235	0.63	+1.0
3,522,837	+		DZA65_RS16235	0.63	+0.5
3,522,838	-		DZA65_RS16235	0.63	-0.8
3,522,838	-		DZA65_RS16235	0.63	+0.4
3,522,838	-		DZA65_RS16235	0.63	+1.5
3,522,838	-		DZA65_RS16235	0.63	+0.4
3,522,838	-		DZA65_RS16235	0.63	+0.5
3,522,838	-		DZA65_RS16235	0.63	+0.4
3,522,838	-		DZA65_RS16235	0.63	+1.5
3,522,838	-		DZA65_RS16235	0.63	+0.2
3,522,838	-		DZA65_RS16235	0.63	+0.5
3,522,916	+		DZA65_RS16235	0.73	-1.1
3,522,917	-		DZA65_RS16235	0.73	+0.2
3,522,922	+		DZA65_RS16235	0.74	-0.1
3,522,922	+		DZA65_RS16235	0.74	+0.4
3,522,922	+		DZA65_RS16235	0.74	-2.1
3,522,923	-		DZA65_RS16235	0.74	+0.2
3,522,923	-		DZA65_RS16235	0.74	+0.0
3,522,923	-		DZA65_RS16235	0.74	-1.8
3,522,926	+		DZA65_RS16235	0.74	-0.5
3,522,926	+		DZA65_RS16235	0.74	+2.8
3,522,926	+		DZA65_RS16235	0.74	-0.4
3,522,926	+		DZA65_RS16235	0.74	+1.1
3,522,926	+		DZA65_RS16235	0.74	-2.3
3,522,927	-		DZA65_RS16235	0.74	+2.7
3,522,927	-		DZA65_RS16235	0.74	+0.4
3,522,927	-		DZA65_RS16235	0.74	-2.6
3,522,927	-		DZA65_RS16235	0.74	-0.5
3,522,927	-		DZA65_RS16235	0.74	+0.3
3,522,927	-		DZA65_RS16235	0.74	-1.0
3,522,927	-		DZA65_RS16235	0.74	+0.2
3,522,927	-		DZA65_RS16235	0.74	+0.7
3,522,927	-		DZA65_RS16235	0.74	+1.2
3,523,024	+		DZA65_RS16235	0.86	+0.3
3,523,024	+		DZA65_RS16235	0.86	+1.3
3,523,041	+		DZA65_RS16235	0.88	-1.3
3,523,067	-				+0.5
3,523,067	-				+0.6
3,523,067	-				+1.2
3,523,138	+				+0.1
3,523,163	+				+0.2
3,523,163	+				-0.1
3,523,164	-				+1.5
3,523,226	-				-0.2
3,523,299	-				-0.2
3,523,309	-				+1.5
3,523,323	-				-0.9
3,523,323	-				+0.7
3,523,323	-				+1.3
3,523,326	-				-0.3
3,523,331	+				-0.5
3,523,429	-				-0.2
3,523,432	+				+1.5
3,523,445	+				-0.9
3,523,504	+				-0.1
3,523,510	-				+0.8
3,523,511	+				-0.3
3,523,514	+				+1.3
3,523,514	+				-0.7
3,523,515	-				+1.8
3,523,522	+				+0.1
3,523,552	-				-0.8
3,523,572	+				-0.9
3,523,573	-				-1.8
3,523,590	-				+1.8
3,523,655	+				-0.2
3,523,678	-				+2.8
3,523,820	-				+0.3
3,523,852	+				+0.1
3,523,948	-				+0.5
3,523,961	+				+0.4
3,523,965	+				+0.1
3,523,965	+				+1.1
3,523,966	-				+1.3
3,523,992	-				+0.2
3,523,992	-				-0.6
3,524,043	-				+0.5
3,524,117	-		DZA65_RS16240	0.16	-1.1
3,524,127	-		DZA65_RS16240	0.18	-0.1