Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16060

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,482,482	+		DZA65_RS16050	0.79	+0.9
3,482,482	+		DZA65_RS16050	0.79	-0.8
3,482,483	-		DZA65_RS16050	0.79	+0.1
3,482,566	-		DZA65_RS16050	0.85	+0.5
3,482,566	-		DZA65_RS16050	0.85	+0.2
3,482,824	+				-0.5
3,482,824	+				-0.5
3,482,824	+				+0.5
3,482,824	+				-1.3
3,482,825	-				-0.2
3,482,825	-				+0.3
3,482,825	-				-0.9
3,482,845	+				-0.5
3,482,845	+				-0.0
3,482,845	+				+0.3
3,482,845	+				-0.7
3,482,845	+				-0.2
3,482,846	-				-0.2
3,482,846	-				+0.5
3,482,848	+				-1.1
3,482,889	+				+0.5
3,482,971	+				-0.1
3,482,972	-				+1.8
3,482,972	-				+1.8
3,482,976	+				+0.5
3,483,042	+		DZA65_RS16055	0.12	+0.2
3,483,042	+		DZA65_RS16055	0.12	-0.1
3,483,090	+		DZA65_RS16055	0.33	+0.9
3,483,091	-		DZA65_RS16055	0.34	+0.7
3,483,091	-		DZA65_RS16055	0.34	-2.5
3,483,091	-		DZA65_RS16055	0.34	+1.2
3,483,091	-		DZA65_RS16055	0.34	+0.0
3,483,100	+		DZA65_RS16055	0.38	-1.1
3,483,100	+		DZA65_RS16055	0.38	-0.2
3,483,101	-		DZA65_RS16055	0.38	+0.2
3,483,101	-		DZA65_RS16055	0.38	+0.6
3,483,106	+		DZA65_RS16055	0.40	+0.5
3,483,106	+		DZA65_RS16055	0.40	+1.1
3,483,106	+		DZA65_RS16055	0.40	+1.5
3,483,239	+				+0.3
3,483,239	+				-1.7
3,483,240	-				-1.4
3,483,240	-				+0.2
3,483,289	+				-0.9
3,483,290	-				+0.4
3,483,290	-				-0.4
3,483,351	+				+0.4
3,483,368	+				-0.7
3,483,368	+				-0.4
3,483,368	+				+0.0
3,483,368	+				+1.0
3,483,368	+				+0.9
3,483,369	-				-1.0
3,483,369	-				+2.7
3,483,369	-				+0.1
3,483,369	-				-1.3
3,483,386	+				+0.4
3,483,386	+				+0.8
3,483,387	-				-0.5
3,483,387	-				+0.3
3,483,388	+				+0.5
3,483,388	+				-0.1
3,483,388	+				+1.7
3,483,388	+				+1.1
3,483,389	-				-0.3
3,483,408	-				-0.2
3,483,539	+		DZA65_RS16060	0.42	+0.7
3,483,539	+		DZA65_RS16060	0.42	-0.7
3,483,540	-		DZA65_RS16060	0.42	+0.2
3,483,609	+		DZA65_RS16060	0.68	-1.6
3,483,609	+		DZA65_RS16060	0.68	+0.0
3,483,657	-		DZA65_RS16060	0.86	-0.7
3,483,657	-		DZA65_RS16060	0.86	-0.8
3,483,687	+				-1.4
3,483,741	+				-0.3
3,483,741	+				-1.4
3,483,741	+				+0.6
3,483,741	+				-0.5
3,483,741	+				-0.8
3,483,742	-				-0.3
3,483,742	-				+1.1
3,483,742	-				-0.1
3,483,742	-				-0.4
3,483,746	+				-0.8
3,483,747	-				-0.4
3,483,808	-		DZA65_RS16065	0.16	+0.2
3,483,808	-		DZA65_RS16065	0.16	-0.0
3,483,808	-		DZA65_RS16065	0.16	+0.5
3,483,845	+		DZA65_RS16065	0.24	-0.9
3,483,845	+		DZA65_RS16065	0.24	+1.5
3,483,845	+		DZA65_RS16065	0.24	-0.3
3,483,845	+		DZA65_RS16065	0.24	-0.6
3,483,845	+				+0.8
3,483,845	+		DZA65_RS16065	0.24	+0.9
3,483,845	+		DZA65_RS16065	0.24	-1.0
3,483,845	+				-0.5
3,483,845	+		DZA65_RS16065	0.24	+0.3
3,483,846	-		DZA65_RS16065	0.25	-0.7
3,483,846	-		DZA65_RS16065	0.25	-0.4
3,483,846	-		DZA65_RS16065	0.25	+0.2
3,483,907	+		DZA65_RS16065	0.39	+0.1
3,483,955	+		DZA65_RS16065	0.50	-0.9
3,483,955	+		DZA65_RS16065	0.50	+1.0
3,483,955	+		DZA65_RS16065	0.50	-0.6
3,483,956	-		DZA65_RS16065	0.50	+0.2
3,483,956	-		DZA65_RS16065	0.50	+0.6
3,483,956	-		DZA65_RS16065	0.50	-0.5
3,483,956	-		DZA65_RS16065	0.50	-0.5
3,483,956	-		DZA65_RS16065	0.50	-1.0
3,483,956	-		DZA65_RS16065	0.50	-0.4
3,484,139	-				+0.4
3,484,151	+				-0.3
3,484,152	-				-0.0
3,484,152	-				-0.5
3,484,162	+				-0.5
3,484,162	+				+0.3
3,484,162	+				+0.3
3,484,162	+				-0.7
3,484,163	-				+0.8
3,484,164	+				-0.3
3,484,164	+				-0.7
3,484,164	+				+0.8
3,484,164	+				+1.5
3,484,164	+				-0.2
3,484,164	+				-0.2
3,484,164	+				-0.3
3,484,164	+				-0.1
3,484,164	+				-0.5
3,484,164	+				+0.5
3,484,164	+				+1.1
3,484,164	+				-2.1
3,484,164	+				+0.3
3,484,164	+				-0.2
3,484,164	+				-0.5
3,484,164	+				+0.8
3,484,164	+				+0.2
3,484,165	-				-1.8
3,484,165	-				-0.2
3,484,165	-				-0.8
3,484,165	-				-0.2
3,484,165	-				-0.2
3,484,165	-				+0.0
3,484,165	-				+0.9
3,484,165	-				-1.5
3,484,165	-				+1.4
3,484,165	-				+0.5
3,484,196	-				-0.5
3,484,196	-				-0.3
3,484,197	+				+0.5
3,484,197	+				-0.7
3,484,198	-				+0.5
3,484,198	-				+1.5
3,484,208	+				-1.4
3,484,208	+				+0.4
3,484,208	+				-0.3
3,484,209	-				+0.5
3,484,246	-				+0.6
3,484,335	+				-1.7
3,484,335	+				+1.1
3,484,335	+				+0.5
3,484,336	-				+0.5
3,484,339	-				-1.0
3,484,339	-				+0.1
3,484,464	-		DZA65_RS16070	0.23	-0.6
3,484,471	+		DZA65_RS16070	0.25	-0.5
3,484,471	+		DZA65_RS16070	0.25	-0.8
3,484,471	+		DZA65_RS16070	0.25	+0.1
3,484,491	+		DZA65_RS16070	0.31	+1.5
3,484,491	+		DZA65_RS16070	0.31	-0.5
3,484,491	+		DZA65_RS16070	0.31	-0.2
3,484,492	-		DZA65_RS16070	0.31	-1.5
3,484,492	-				+0.5
3,484,685	+		DZA65_RS16070	0.84	+1.0
3,484,685	+		DZA65_RS16070	0.84	+1.7
3,484,685	+		DZA65_RS16070	0.84	+0.5
3,484,685	+		DZA65_RS16070	0.84	+0.0
3,484,685	+		DZA65_RS16070	0.84	+2.2
3,484,685	+		DZA65_RS16070	0.84	-0.2
3,484,685	+		DZA65_RS16070	0.84	+1.8
3,484,685	+		DZA65_RS16070	0.84	+0.1
3,484,685	+		DZA65_RS16070	0.84	+0.8
3,484,685	+				-0.1
3,484,685	+		DZA65_RS16070	0.84	-2.7
3,484,685	+		DZA65_RS16070	0.84	-0.8
3,484,685	+		DZA65_RS16070	0.84	-0.5
3,484,685	+				-0.5
3,484,685	+		DZA65_RS16070	0.84	-1.0
3,484,685	+		DZA65_RS16070	0.84	-2.6
3,484,686	-		DZA65_RS16070	0.85	-0.0
3,484,686	-		DZA65_RS16070	0.85	-0.8
3,484,686	-		DZA65_RS16070	0.85	-0.7
3,484,686	-		DZA65_RS16070	0.85	+0.3
3,484,686	-		DZA65_RS16070	0.85	-1.1
3,484,686	-		DZA65_RS16070	0.85	+0.4
3,484,686	-		DZA65_RS16070	0.85	-1.6
3,484,686	-		DZA65_RS16070	0.85	-1.3
3,484,686	-		DZA65_RS16070	0.85	+0.2
3,484,686	-		DZA65_RS16070	0.85	-0.5
3,484,686	-				+2.1
3,484,686	-		DZA65_RS16070	0.85	-1.8
3,484,686	-		DZA65_RS16070	0.85	+0.2
3,484,686	-		DZA65_RS16070	0.85	+2.8
3,484,686	-		DZA65_RS16070	0.85	+0.2
3,484,686	-		DZA65_RS16070	0.85	-0.4
3,484,686	-		DZA65_RS16070	0.85	-0.2
3,484,686	-		DZA65_RS16070	0.85	+0.5
3,484,686	-		DZA65_RS16070	0.85	-0.3
3,484,686	-		DZA65_RS16070	0.85	-0.0
3,484,687	+		DZA65_RS16070	0.85	-2.3
3,484,687	+		DZA65_RS16070	0.85	+0.1
3,484,687	+		DZA65_RS16070	0.85	-2.1