Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15345

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,326,350	+				-1.5
3,326,351	-				-1.2
3,326,351	-				-0.5
3,326,351	-				-2.1
3,326,351	-				+0.5
3,326,445	-				-0.1
3,326,506	+				+0.7
3,326,506	+				-1.0
3,326,506	+				-1.9
3,326,506	+				-2.9
3,326,506	+				-0.3
3,326,506	+				-0.1
3,326,506	+				-0.5
3,326,506	+				-1.2
3,326,507	-				-0.9
3,326,507	-				-0.1
3,326,507	-				-0.4
3,326,507	-				+0.2
3,326,507	-				-2.3
3,326,507	-				-1.3
3,326,545	+				-1.0
3,326,545	+				-2.7
3,326,565	-		DZA65_RS15340	0.12	+1.4
3,326,567	+		DZA65_RS15340	0.13	-0.9
3,326,567	+		DZA65_RS15340	0.13	-0.9
3,326,567	+		DZA65_RS15340	0.13	-1.0
3,326,567	+		DZA65_RS15340	0.13	-0.1
3,326,568	-		DZA65_RS15340	0.13	-0.9
3,326,568	-		DZA65_RS15340	0.13	-1.9
3,326,568	-		DZA65_RS15340	0.13	-0.4
3,326,569	+		DZA65_RS15340	0.13	-1.0
3,326,569	+		DZA65_RS15340	0.13	-2.0
3,326,569	+		DZA65_RS15340	0.13	+0.0
3,326,569	+		DZA65_RS15340	0.13	-0.5
3,326,570	-		DZA65_RS15340	0.13	-1.3
3,326,570	-		DZA65_RS15340	0.13	-0.9
3,326,570	-		DZA65_RS15340	0.13	-0.2
3,326,570	-		DZA65_RS15340	0.13	-0.4
3,326,570	-		DZA65_RS15340	0.13	+1.8
3,326,570	-		DZA65_RS15340	0.13	+0.0
3,326,752	+		DZA65_RS15340	0.50	+0.8
3,326,752	+		DZA65_RS15340	0.50	-2.5
3,326,752	+		DZA65_RS15340	0.50	-0.3
3,326,752	+		DZA65_RS15340	0.50	+0.0
3,326,752	+		DZA65_RS15340	0.50	-2.3
3,326,753	-		DZA65_RS15340	0.50	-1.5
3,326,753	-		DZA65_RS15340	0.50	-0.5
3,326,753	-		DZA65_RS15340	0.50	-0.3
3,326,753	-		DZA65_RS15340	0.50	-1.2
3,326,753	-		DZA65_RS15340	0.50	-0.9
3,326,753	-		DZA65_RS15340	0.50	+0.7
3,326,753	-		DZA65_RS15340	0.50	-0.3
3,326,753	-		DZA65_RS15340	0.50	-2.1
3,326,753	-		DZA65_RS15340	0.50	-0.1
3,326,753	-		DZA65_RS15340	0.50	+0.5
3,326,753	-		DZA65_RS15340	0.50	-0.2
3,326,753	-		DZA65_RS15340	0.50	-0.5
3,326,756	+		DZA65_RS15340	0.51	+0.1
3,326,756	+		DZA65_RS15340	0.51	-1.1
3,326,757	-		DZA65_RS15340	0.51	-0.3
3,326,831	+		DZA65_RS15340	0.66	-0.0
3,326,832	-		DZA65_RS15340	0.66	+0.9
3,326,832	-		DZA65_RS15340	0.66	-0.9
3,326,846	-		DZA65_RS15340	0.69	-0.3
3,326,857	+		DZA65_RS15340	0.72	-0.2
3,326,857	+		DZA65_RS15340	0.72	-1.2
3,326,863	+		DZA65_RS15340	0.73	+1.5
3,326,863	+		DZA65_RS15340	0.73	-0.5
3,326,863	+		DZA65_RS15340	0.73	-0.9
3,326,863	+		DZA65_RS15340	0.73	-1.1
3,326,863	+		DZA65_RS15340	0.73	-2.3
3,326,863	+		DZA65_RS15340	0.73	-1.6
3,326,863	+		DZA65_RS15340	0.73	+0.8
3,326,863	+		DZA65_RS15340	0.73	+0.8
3,326,863	+		DZA65_RS15340	0.73	-0.5
3,326,863	+		DZA65_RS15340	0.73	+0.1
3,326,863	+		DZA65_RS15340	0.73	-0.3
3,326,863	+		DZA65_RS15340	0.73	-0.7
3,326,863	+		DZA65_RS15340	0.73	+0.2
3,326,863	+		DZA65_RS15340	0.73	-1.5
3,326,864	-		DZA65_RS15340	0.73	-1.0
3,326,864	-		DZA65_RS15340	0.73	-0.2
3,326,864	-		DZA65_RS15340	0.73	-0.5
3,326,864	-		DZA65_RS15340	0.73	-0.2
3,326,864	-		DZA65_RS15340	0.73	+0.7
3,326,864	-		DZA65_RS15340	0.73	-0.8
3,326,864	-		DZA65_RS15340	0.73	-0.4
3,326,864	-		DZA65_RS15340	0.73	-0.5
3,326,864	-		DZA65_RS15340	0.73	-1.5
3,326,864	-		DZA65_RS15340	0.73	-0.1
3,326,864	-		DZA65_RS15340	0.73	-0.2
3,326,864	-		DZA65_RS15340	0.73	+0.5
3,326,864	-		DZA65_RS15340	0.73	+0.8
3,326,864	-		DZA65_RS15340	0.73	+1.2
3,326,864	-		DZA65_RS15340	0.73	+0.5
3,326,864	-		DZA65_RS15340	0.73	-0.3
3,326,866	+		DZA65_RS15340	0.73	-2.1
3,326,867	-		DZA65_RS15340	0.74	-1.1
3,326,923	-		DZA65_RS15340	0.85	-1.1
3,326,923	-		DZA65_RS15340	0.85	-0.1
3,326,923	-		DZA65_RS15340	0.85	-1.2
3,326,923	-		DZA65_RS15340	0.85	+0.4
3,326,966	+				-1.3
3,326,980	+				-1.9
3,327,001	+				+0.5
3,327,001	+				-2.7
3,327,001	+				-0.1
3,327,001	+				-1.1
3,327,001	+				+0.1
3,327,001	+				-0.9
3,327,001	+				-0.4
3,327,002	-				-0.3
3,327,002	-				-0.6
3,327,002	-				+0.5
3,327,002	-				+0.4
3,327,002	-				+1.3
3,327,002	-				-1.1
3,327,002	-				-0.2
3,327,002	-				-1.1
3,327,006	+				-2.7
3,327,006	+				+0.7
3,327,007	-				-0.1
3,327,007	-				-1.0
3,327,007	-				+0.0
3,327,007	-				+1.8
3,327,009	+				+2.6
3,327,010	-				+0.5
3,327,059	+				-0.1
3,327,060	-				+0.8
3,327,206	+				-0.3
3,327,207	-				-0.6
3,327,246	+				+0.3
3,327,246	+				-0.5
3,327,246	+				-0.5
3,327,246	+				-1.3
3,327,246	+				-0.0
3,327,247	-				+0.5
3,327,247	-				-1.1
3,327,247	-				-1.1
3,327,266	+				-0.9
3,327,267	-				+0.2
3,327,267	-				+1.4
3,327,368	+		DZA65_RS15345	0.12	-0.9
3,327,368	+		DZA65_RS15345	0.12	-1.3
3,327,368	+		DZA65_RS15345	0.12	-0.1
3,327,368	+		DZA65_RS15345	0.12	+0.2
3,327,368	+		DZA65_RS15345	0.12	-1.4
3,327,368	+		DZA65_RS15345	0.12	-0.3
3,327,368	+		DZA65_RS15345	0.12	+0.7
3,327,368	+		DZA65_RS15345	0.12	-2.3
3,327,369	-		DZA65_RS15345	0.12	-0.0
3,327,369	-		DZA65_RS15345	0.12	-0.2
3,327,369	-		DZA65_RS15345	0.12	-0.5
3,327,369	-		DZA65_RS15345	0.12	-0.5
3,327,369	-		DZA65_RS15345	0.12	-0.9
3,327,369	-		DZA65_RS15345	0.12	-2.1
3,327,369	-		DZA65_RS15345	0.12	+1.2
3,327,369	-		DZA65_RS15345	0.12	-0.5
3,327,369	-		DZA65_RS15345	0.12	-0.1
3,327,369	-		DZA65_RS15345	0.12	-0.4
3,327,372	+		DZA65_RS15345	0.12	+0.0
3,327,372	+		DZA65_RS15345	0.12	+0.5
3,327,373	-		DZA65_RS15345	0.12	+1.0
3,327,411	+		DZA65_RS15345	0.17	+0.7
3,327,412	-		DZA65_RS15345	0.17	-1.5
3,327,412	-		DZA65_RS15345	0.17	-0.9
3,327,412	-		DZA65_RS15345	0.17	-0.3
3,327,413	+		DZA65_RS15345	0.17	-0.5
3,327,414	-		DZA65_RS15345	0.17	-2.9
3,327,414	-		DZA65_RS15345	0.17	-0.6
3,327,606	+		DZA65_RS15345	0.39	-1.7
3,327,607	-		DZA65_RS15345	0.39	-0.4
3,327,607	-		DZA65_RS15345	0.39	-0.5
3,327,607	-		DZA65_RS15345	0.39	+1.5
3,327,637	-		DZA65_RS15345	0.42	+0.3
3,327,637	-		DZA65_RS15345	0.42	-0.3
3,327,651	+		DZA65_RS15345	0.44	-1.2
3,327,651	+		DZA65_RS15345	0.44	-0.8
3,327,652	-		DZA65_RS15345	0.44	+0.7
3,328,046	+		DZA65_RS15345	0.89	-0.5
3,328,047	-		DZA65_RS15345	0.89	-1.9