Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15255

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,310,083	+				+0.8
3,310,088	+				+0.6
3,310,132	+				+0.4
3,310,254	+				+0.7
3,310,254	+				-0.1
3,310,318	+		DZA65_RS15250	0.14	+1.0
3,310,318	+		DZA65_RS15250	0.14	+0.4
3,310,318	+		DZA65_RS15250	0.14	-0.5
3,310,318	+		DZA65_RS15250	0.14	+0.1
3,310,318	+		DZA65_RS15250	0.14	+0.5
3,310,318	+		DZA65_RS15250	0.14	-0.1
3,310,318	+		DZA65_RS15250	0.14	+0.3
3,310,322	+		DZA65_RS15250	0.15	-0.5
3,310,322	+		DZA65_RS15250	0.15	+0.5
3,310,322	+		DZA65_RS15250	0.15	+0.0
3,310,322	+		DZA65_RS15250	0.15	+0.8
3,310,345	+		DZA65_RS15250	0.19	-0.5
3,310,345	+		DZA65_RS15250	0.19	+0.2
3,310,357	+		DZA65_RS15250	0.21	-0.5
3,310,357	+		DZA65_RS15250	0.21	+0.5
3,310,357	+		DZA65_RS15250	0.21	+0.0
3,310,357	+		DZA65_RS15250	0.21	+2.3
3,310,360	+		DZA65_RS15250	0.22	+0.7
3,310,366	-		DZA65_RS15250	0.23	-1.5
3,310,369	+		DZA65_RS15250	0.23	+0.3
3,310,369	+		DZA65_RS15250	0.23	+0.7
3,310,369	+		DZA65_RS15250	0.23	+1.3
3,310,369	+		DZA65_RS15250	0.23	+0.2
3,310,369	+		DZA65_RS15250	0.23	-1.5
3,310,369	+		DZA65_RS15250	0.23	+0.3
3,310,378	+		DZA65_RS15250	0.25	+0.5
3,310,378	+		DZA65_RS15250	0.25	+0.1
3,310,378	+		DZA65_RS15250	0.25	+2.4
3,310,378	+		DZA65_RS15250	0.25	+0.0
3,310,382	+		DZA65_RS15250	0.26	-2.4
3,310,382	+		DZA65_RS15250	0.26	-1.9
3,310,401	+		DZA65_RS15250	0.29	+0.5
3,310,401	+		DZA65_RS15250	0.29	-0.3
3,310,401	+		DZA65_RS15250	0.29	-1.5
3,310,470	+		DZA65_RS15250	0.41	+0.4
3,310,470	+		DZA65_RS15250	0.41	+0.4
3,310,471	-		DZA65_RS15250	0.42	+0.6
3,310,471	-		DZA65_RS15250	0.42	-1.5
3,310,471	-		DZA65_RS15250	0.42	+0.5
3,310,473	+		DZA65_RS15250	0.42	-0.5
3,310,535	-		DZA65_RS15250	0.53	-0.3
3,310,596	+		DZA65_RS15250	0.64	+0.9
3,310,632	+		DZA65_RS15250	0.70	+0.4
3,310,632	+		DZA65_RS15250	0.70	+0.9
3,310,632	+		DZA65_RS15250	0.70	+0.6
3,310,633	-		DZA65_RS15250	0.70	-2.5
3,310,645	+		DZA65_RS15250	0.73	-1.1
3,310,645	+		DZA65_RS15250	0.73	-2.0
3,310,645	+		DZA65_RS15250	0.73	-0.7
3,310,645	+		DZA65_RS15250	0.73	-0.9
3,310,646	-		DZA65_RS15250	0.73	+1.3
3,310,646	-		DZA65_RS15250	0.73	-0.1
3,310,646	-		DZA65_RS15250	0.73	+0.3
3,310,646	-		DZA65_RS15250	0.73	-0.5
3,310,646	-		DZA65_RS15250	0.73	-1.5
3,310,647	+		DZA65_RS15250	0.73	-0.5
3,310,647	+		DZA65_RS15250	0.73	+0.2
3,310,647	+		DZA65_RS15250	0.73	+1.5
3,310,647	+		DZA65_RS15250	0.73	+0.9
3,310,647	+		DZA65_RS15250	0.73	-1.5
3,310,647	+		DZA65_RS15250	0.73	+0.6
3,310,647	+		DZA65_RS15250	0.73	-0.3
3,310,647	+		DZA65_RS15250	0.73	+0.8
3,310,647	+		DZA65_RS15250	0.73	-0.5
3,310,647	+		DZA65_RS15250	0.73	+1.9
3,310,648	-		DZA65_RS15250	0.73	-0.1
3,310,648	-				+3.3
3,310,648	-		DZA65_RS15250	0.73	-0.5
3,310,648	-		DZA65_RS15250	0.73	+0.9
3,310,648	-		DZA65_RS15250	0.73	-1.3
3,310,648	-		DZA65_RS15250	0.73	+1.5
3,310,648	-		DZA65_RS15250	0.73	+0.2
3,310,648	-		DZA65_RS15250	0.73	+0.3
3,310,648	-		DZA65_RS15250	0.73	+0.2
3,310,686	+		DZA65_RS15250	0.80	-0.5
3,310,686	+		DZA65_RS15250	0.80	-0.3
3,310,686	+		DZA65_RS15250	0.80	-0.9
3,310,686	+		DZA65_RS15250	0.80	+1.0
3,310,686	+		DZA65_RS15250	0.80	+0.1
3,310,687	-		DZA65_RS15250	0.80	+0.5
3,310,687	-		DZA65_RS15250	0.80	+0.4
3,310,687	-		DZA65_RS15250	0.80	-0.0
3,310,689	+		DZA65_RS15250	0.80	+0.4
3,310,689	+		DZA65_RS15250	0.80	+0.8
3,310,689	+		DZA65_RS15250	0.80	-0.2
3,310,689	+		DZA65_RS15250	0.80	+0.7
3,310,689	+		DZA65_RS15250	0.80	-0.2
3,310,689	+		DZA65_RS15250	0.80	-0.1
3,310,689	+		DZA65_RS15250	0.80	+1.5
3,310,690	-		DZA65_RS15250	0.81	+0.5
3,310,690	-		DZA65_RS15250	0.81	+1.3
3,310,690	-		DZA65_RS15250	0.81	+1.8
3,310,690	-		DZA65_RS15250	0.81	+0.3
3,310,690	-		DZA65_RS15250	0.81	+1.0
3,310,690	-		DZA65_RS15250	0.81	+0.9
3,310,690	-		DZA65_RS15250	0.81	+1.0
3,310,690	-		DZA65_RS15250	0.81	+0.5
3,310,735	+		DZA65_RS15250	0.89	-0.9
3,310,735	+		DZA65_RS15250	0.89	-0.4
3,310,735	+		DZA65_RS15250	0.89	+0.3
3,310,735	+		DZA65_RS15250	0.89	+0.9
3,310,735	+		DZA65_RS15250	0.89	-0.8
3,310,735	+		DZA65_RS15250	0.89	+0.1
3,310,735	+		DZA65_RS15250	0.89	+0.6
3,310,735	+		DZA65_RS15250	0.89	-0.3
3,310,735	+		DZA65_RS15250	0.89	+0.6
3,310,735	+		DZA65_RS15250	0.89	+0.1
3,310,735	+		DZA65_RS15250	0.89	-0.4
3,310,735	+		DZA65_RS15250	0.89	-1.9
3,310,735	+		DZA65_RS15250	0.89	+0.0
3,310,736	-		DZA65_RS15250	0.89	-0.2
3,310,736	-		DZA65_RS15250	0.89	-0.4
3,310,736	-		DZA65_RS15250	0.89	-1.0
3,310,736	-		DZA65_RS15250	0.89	+0.0
3,310,796	+				+0.1
3,310,796	+				-0.5
3,310,807	+				+0.2
3,310,807	+				-0.5
3,310,807	+				+1.9
3,310,807	+				+0.7
3,310,807	+				+0.1
3,310,808	-				-0.1
3,310,808	-				-0.3
3,310,808	-				-1.0
3,310,808	-				+0.2
3,310,808	-				+0.0
3,310,808	-				-1.5
3,310,811	+				-0.5
3,310,811	+				-0.4
3,310,811	+				+0.1
3,310,811	+				+0.5
3,310,812	-				+0.5
3,310,812	-				-1.4
3,310,812	-				+0.1
3,310,812	-				+1.3
3,310,812	-				+1.1
3,310,812	-				-0.2
3,310,813	+				+0.3
3,310,854	+				-0.1
3,310,854	+				-0.4
3,310,864	+				-1.1
3,310,865	-				+0.2
3,310,956	+				+0.4
3,311,053	-				-0.9
3,311,055	+				-1.6
3,311,055	+				+0.3
3,311,056	-				+0.3
3,311,056	-				+1.2
3,311,060	+				-0.1
3,311,060	+				+1.6
3,311,060	+				+1.9
3,311,060	+				+0.2
3,311,061	-				-1.4
3,311,061	-				-0.0
3,311,061	-				+1.2
3,311,066	+				-2.1
3,311,066	+				-1.6
3,311,066	+				+0.2
3,311,066	+				+1.1
3,311,066	+				-0.1
3,311,066	+				-0.6
3,311,066	+				-0.6
3,311,066	+				+0.8
3,311,066	+				+0.6
3,311,066	+				-0.8
3,311,066	+				+0.4
3,311,066	+				+0.2
3,311,066	+				-0.2
3,311,066	+				-1.3
3,311,066	+				+1.2
3,311,067	-				+0.4
3,311,067	-				+0.9
3,311,067	-				-0.3
3,311,067	-				-1.8
3,311,067	-				-0.2
3,311,067	-				-0.4
3,311,067	-				+1.4
3,311,067	-				+1.4
3,311,067	-				+2.0
3,311,067	-				-0.2
3,311,100	-				-0.1
3,311,147	+		DZA65_RS15255	0.18	+0.1
3,311,148	-		DZA65_RS15255	0.18	+0.9
3,311,218	+		DZA65_RS15255	0.37	+0.3
3,311,218	+		DZA65_RS15255	0.37	+0.8
3,311,219	-		DZA65_RS15255	0.37	+0.9
3,311,277	+		DZA65_RS15255	0.53	-1.1
3,311,278	-		DZA65_RS15255	0.53	+1.1
3,311,278	-		DZA65_RS15255	0.53	-0.4
3,311,278	-		DZA65_RS15255	0.53	+0.3
3,311,402	+		DZA65_RS15255	0.87	-0.8
3,311,402	+		DZA65_RS15255	0.87	+0.6
3,311,403	-		DZA65_RS15255	0.87	-0.7
3,311,403	-		DZA65_RS15255	0.87	+0.4
3,311,444	+				-0.9
3,311,445	-				+0.1
3,311,445	-				-0.7
3,311,445	-				-1.6
3,311,445	-				-0.1
3,311,476	+				-1.4
3,311,476	+				-0.3
3,311,476	+				+0.2
3,311,480	+				-1.0
3,311,480	+				-1.1
3,311,480	+				-0.2
3,311,481	-				+1.9
3,311,582	-				-2.0
3,311,633	+				+1.0
3,311,664	+		DZA65_RS15260	0.10	-1.4
3,311,664	+		DZA65_RS15260	0.10	-0.2
3,311,664	+		DZA65_RS15260	0.10	-2.4
3,311,665	-		DZA65_RS15260	0.10	-1.4
3,311,665	-		DZA65_RS15260	0.10	-0.5
3,311,665	-		DZA65_RS15260	0.10	-0.0
3,311,665	-		DZA65_RS15260	0.10	+0.8
3,311,665	-		DZA65_RS15260	0.10	+0.5
3,311,665	-		DZA65_RS15260	0.10	+0.5
3,311,665	-		DZA65_RS15260	0.10	+0.1
3,311,665	-		DZA65_RS15260	0.10	-1.1
3,311,824	+		DZA65_RS15260	0.34	-1.9
3,311,825	-		DZA65_RS15260	0.35	-0.5
3,311,825	-		DZA65_RS15260	0.35	-0.2
3,311,825	-		DZA65_RS15260	0.35	-0.7
3,311,867	+		DZA65_RS15260	0.41	+1.7
3,312,003	-		DZA65_RS15260	0.62	-0.9
3,312,128	+		DZA65_RS15260	0.81	+1.7
3,312,128	+		DZA65_RS15260	0.81	+1.5
3,312,129	-		DZA65_RS15260	0.81	-0.0
3,312,129	-		DZA65_RS15260	0.81	+0.2
3,312,156	-		DZA65_RS15260	0.85	+0.2
3,312,193	-				-0.5
3,312,245	+				-0.1
3,312,246	-				+0.6
3,312,270	+				+0.0
3,312,270	+				+0.5
3,312,271	-				-0.5
3,312,274	+				+1.0
3,312,274	+				-0.5
3,312,274	+				-0.5
3,312,274	+				+1.5
3,312,274	+				-0.1
3,312,274	+				+1.7
3,312,274	+				+1.0
3,312,275	-				+1.8
3,312,275	-				+0.5
3,312,275	-				+0.9
3,312,275	-				+0.0
3,312,278	+				+0.7
3,312,278	+				-1.4
3,312,278	+				+0.5
3,312,279	-				+1.5
3,312,282	+				-1.9
3,312,282	+				+1.0
3,312,282	+				+0.7
3,312,282	+				+1.5
3,312,283	-				+1.7
3,312,288	-				-0.3
3,312,295	-				+0.2
3,312,298	+				-1.5
3,312,298	+				+0.2
3,312,298	+				+0.2
3,312,298	+				+0.8
3,312,298	+				-1.9
3,312,298	+				-0.1
3,312,299	-				+0.2
3,312,299	-				+0.6
3,312,299	-				-2.5
3,312,299	-				-0.7
3,312,299	-				-1.4
3,312,299	-				+0.3
3,312,299	-				+0.3
3,312,299	-				+0.2
3,312,304	-				-0.5
3,312,310	+				-2.1
3,312,310	+				-1.0
3,312,310	+				+0.1
3,312,311	-				-0.1
3,312,311	-				+0.7
3,312,314	+				+0.6
3,312,314	+				-0.1
3,312,314	+				+0.2
3,312,314	+				-0.1
3,312,315	-				+0.5
3,312,315	-				+1.1
3,312,315	-				+1.5
3,312,319	+				-1.3
3,312,351	+				-1.4
3,312,352	-				+1.7
3,312,352	-				-0.1
3,312,352	-				-0.9
3,312,397	-				-1.7
3,312,397	-				-0.3
3,312,430	+		DZA65_RS15265	0.16	-0.9
3,312,431	-		DZA65_RS15265	0.16	-1.4
3,312,431	-		DZA65_RS15265	0.16	-0.1
3,312,431	-		DZA65_RS15265	0.16	-0.8
3,312,431	-		DZA65_RS15265	0.16	+0.4
3,312,431	-		DZA65_RS15265	0.16	-1.0
3,312,438	+		DZA65_RS15265	0.17	-0.8
3,312,438	+		DZA65_RS15265	0.17	-1.7
3,312,438	+		DZA65_RS15265	0.17	+1.3
3,312,438	+		DZA65_RS15265	0.17	-1.5
3,312,438	+		DZA65_RS15265	0.17	+0.3
3,312,438	+		DZA65_RS15265	0.17	+0.6
3,312,438	+		DZA65_RS15265	0.17	+0.0
3,312,438	+		DZA65_RS15265	0.17	-1.7
3,312,438	+		DZA65_RS15265	0.17	-0.1
3,312,438	+		DZA65_RS15265	0.17	+1.7
3,312,438	+		DZA65_RS15265	0.17	-0.9
3,312,438	+		DZA65_RS15265	0.17	-0.5
3,312,439	-		DZA65_RS15265	0.17	-1.5
3,312,439	-		DZA65_RS15265	0.17	-0.4
3,312,439	-		DZA65_RS15265	0.17	+0.5
3,312,439	-		DZA65_RS15265	0.17	-0.5
3,312,439	-		DZA65_RS15265	0.17	-2.1
3,312,439	-		DZA65_RS15265	0.17	-1.4
3,312,439	-		DZA65_RS15265	0.17	+1.0
3,312,439	-		DZA65_RS15265	0.17	+0.5
3,312,439	-		DZA65_RS15265	0.17	-0.3