Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14680

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,191,216	-		DZA65_RS14675	0.73	+0.9
3,191,216	-		DZA65_RS14675	0.73	+1.2
3,191,279	+		DZA65_RS14675	0.79	+0.0
3,191,279	+		DZA65_RS14675	0.79	+1.2
3,191,279	+		DZA65_RS14675	0.79	+0.6
3,191,279	+		DZA65_RS14675	0.79	+1.7
3,191,279	+		DZA65_RS14675	0.79	+0.6
3,191,310	+		DZA65_RS14675	0.82	+1.1
3,191,311	-		DZA65_RS14675	0.82	+2.1
3,191,311	-		DZA65_RS14675	0.82	-0.9
3,191,311	-		DZA65_RS14675	0.82	+0.4
3,191,332	+		DZA65_RS14675	0.84	+0.3
3,191,332	+		DZA65_RS14675	0.84	+0.4
3,191,332	+		DZA65_RS14675	0.84	+1.6
3,191,332	+		DZA65_RS14675	0.84	+2.2
3,191,332	+		DZA65_RS14675	0.84	+1.4
3,191,332	+		DZA65_RS14675	0.84	-0.6
3,191,333	-		DZA65_RS14675	0.84	+1.6
3,191,333	-				-0.6
3,191,333	-		DZA65_RS14675	0.84	-0.5
3,191,333	-		DZA65_RS14675	0.84	+1.0
3,191,355	+		DZA65_RS14675	0.87	-0.2
3,191,355	+		DZA65_RS14675	0.87	-0.4
3,191,355	+		DZA65_RS14675	0.87	-0.6
3,191,356	-		DZA65_RS14675	0.87	-0.8
3,191,356	-		DZA65_RS14675	0.87	+0.6
3,191,356	-		DZA65_RS14675	0.87	+0.4
3,191,356	-		DZA65_RS14675	0.87	-0.2
3,191,414	+				+0.5
3,191,414	+				-2.6
3,191,415	-				-0.4
3,191,415	-				+0.4
3,191,415	-				+1.9
3,191,415	-				+1.7
3,191,437	+				+1.0
3,191,463	-				-0.1
3,191,482	+				+0.4
3,191,488	+				+1.0
3,191,506	+				-0.8
3,191,506	+				+0.9
3,191,506	+				-2.6
3,191,506	+				-0.0
3,191,506	+				-1.1
3,191,506	+				-1.4
3,191,506	+				-0.4
3,191,506	+				-1.2
3,191,506	+				-1.1
3,191,507	-				-1.2
3,191,507	-				+0.1
3,191,507	-				+1.0
3,191,507	-				+2.1
3,191,507	-				+1.1
3,191,507	-				-0.9
3,191,507	-				-1.3
3,191,507	-				-0.2
3,191,507	-				-1.6
3,191,507	-				-0.8
3,191,507	-				-0.4
3,191,508	+				+0.4
3,191,520	+				-2.6
3,191,520	+				+0.3
3,191,574	+				+0.6
3,191,574	+				-1.2
3,191,575	-				+0.1
3,191,582	+				-0.6
3,191,582	+				-1.3
3,191,583	-				-1.2
3,191,583	-				+0.9
3,191,583	-				-1.5
3,191,638	+				+0.4
3,191,638	+				+1.3
3,191,650	+				-0.6
3,191,650	+				+0.7
3,191,650	+				+0.1
3,191,650	+				+0.1
3,191,650	+				-0.2
3,191,650	+				-1.2
3,191,650	+				-0.9
3,191,650	+				+1.4
3,191,650	+				+2.2
3,191,650	+				-0.6
3,191,651	-				-1.9
3,191,651	-				-0.2
3,191,651	-				-1.9
3,191,662	+				+1.0
3,191,672	+				-0.2
3,191,672	+				-1.0
3,191,672	+				-0.3
3,191,672	+				+0.4
3,191,672	+				+1.0
3,191,673	-				+0.7
3,191,673	-				+0.4
3,191,673	-				+2.7
3,191,673	-				+2.2
3,191,686	+				+1.5
3,191,726	+				+0.2
3,191,726	+				+1.0
3,191,726	+				+0.7
3,191,726	+				+0.7
3,191,726	+				-1.1
3,191,726	+				+1.3
3,191,726	+				+2.8
3,191,727	-				+0.2
3,191,727	-				-0.5
3,191,727	-				+0.4
3,191,727	-				-0.1
3,191,727	-				+0.4
3,191,727	-				+0.1
3,191,727	-				-0.6
3,191,762	+				+1.7
3,191,762	+				-0.4
3,191,861	+				-1.1
3,191,861	+				+1.7
3,191,862	-				+1.4
3,191,862	-				+0.4
3,191,862	-				+0.7
3,191,862	-				+0.7
3,191,882	+				-0.1
3,191,882	+				+0.4
3,191,930	+				-1.2
3,191,930	+				+1.2
3,191,931	-				-0.1
3,191,931	-				+2.3
3,191,931	-				+0.2
3,191,931	-				-2.2
3,191,934	+				+0.2
3,191,934	+				-1.4
3,191,935	-				-0.9
3,191,935	-				-2.2
3,191,935	-				-0.6
3,191,994	+				+0.8
3,191,995	-				-0.5
3,191,998	+				-0.1
3,191,999	-				-0.0
3,192,221	+				-0.6
3,192,253	+		DZA65_RS14680	0.10	+0.2
3,192,253	+		DZA65_RS14680	0.10	-0.9
3,192,253	+		DZA65_RS14680	0.10	-1.3
3,192,253	+		DZA65_RS14680	0.10	-2.6
3,192,254	-		DZA65_RS14680	0.10	+0.1
3,192,254	-		DZA65_RS14680	0.10	+0.3
3,192,254	-		DZA65_RS14680	0.10	-0.8
3,192,254	-		DZA65_RS14680	0.10	+0.4
3,192,254	-		DZA65_RS14680	0.10	-1.2
3,192,254	-		DZA65_RS14680	0.10	+1.5
3,192,345	+				-0.8
3,192,346	-		DZA65_RS14680	0.33	-1.7
3,192,346	-		DZA65_RS14680	0.33	-0.5
3,192,346	-		DZA65_RS14680	0.33	-0.7
3,192,346	-		DZA65_RS14680	0.33	-0.2
3,192,599	+				-0.9
3,192,599	+				-1.2
3,192,600	-				+2.0
3,192,600	-				-1.1
3,192,603	+				+0.1
3,192,603	+				-0.7
3,192,603	+				+0.5
3,192,603	+				-1.1
3,192,603	+				+0.0
3,192,604	-				-0.2
3,192,604	-				+0.1
3,192,604	-				-0.1
3,192,625	+				-1.1
3,192,626	-				+0.8
3,192,637	+				-2.2
3,192,637	+				+0.0
3,192,637	+				-0.4
3,192,637	+				-0.6
3,192,637	+				-0.4
3,192,638	-				+0.3
3,192,638	-				+0.4
3,192,638	-				-0.6
3,192,638	-				-2.2
3,192,638	-				+0.4
3,192,638	-				-0.9
3,192,638	-				+0.3
3,192,650	+				-0.8
3,192,650	+				-1.6
3,192,650	+				+0.4
3,192,650	+				+3.4
3,192,650	+				-0.4
3,192,650	+				-0.1
3,192,650	+				+0.6
3,192,651	-				-0.1
3,192,651	-				-1.2
3,192,651	-				+0.9
3,192,651	-				+0.8
3,192,651	-				+0.5
3,192,651	-				-0.7
3,192,651	-				+1.4
3,192,651	-				-0.6
3,192,651	-				+0.3
3,192,651	-				-0.2
3,192,651	-				-1.2
3,192,651	-				+0.5
3,192,651	-				-2.2
3,192,652	+				-1.4
3,192,661	+				-0.4
3,192,662	-				+0.1
3,192,696	-				-2.2
3,192,696	-				+0.0
3,192,704	+				-0.6
3,192,705	-				+1.2
3,192,705	-				-0.5
3,192,706	+				-0.2
3,192,706	+				+0.7
3,192,706	+				-1.4
3,192,707	-				-1.0
3,192,707	-				-0.0
3,192,707	-				-0.2
3,192,707	-				-0.0
3,192,707	-				+0.9
3,192,707	-				-0.0
3,192,707	-				-0.0
3,192,708	+				+0.7
3,192,708	+				-0.2
3,192,708	+				+0.8
3,192,708	+				+0.4
3,192,708	+				-0.6
3,192,708	+				+1.7
3,192,709	-				-1.4
3,192,709	-				-0.1
3,192,709	-				+1.5
3,192,784	+				+1.3
3,192,784	+				+2.6
3,192,785	-				+0.6
3,192,997	+		DZA65_RS14685	0.31	-0.6
3,192,999	+				+2.0
3,192,999	+		DZA65_RS14685	0.31	-0.5
3,192,999	+		DZA65_RS14685	0.31	-0.8
3,192,999	+		DZA65_RS14685	0.31	+0.4
3,192,999	+		DZA65_RS14685	0.31	+0.4
3,192,999	+		DZA65_RS14685	0.31	-0.9
3,192,999	+		DZA65_RS14685	0.31	-0.1
3,192,999	+		DZA65_RS14685	0.31	-1.6
3,192,999	+		DZA65_RS14685	0.31	-0.5
3,192,999	+		DZA65_RS14685	0.31	+0.1
3,193,000	-		DZA65_RS14685	0.31	-1.9
3,193,000	-		DZA65_RS14685	0.31	+0.9
3,193,000	-		DZA65_RS14685	0.31	+1.0
3,193,000	-		DZA65_RS14685	0.31	+1.4
3,193,000	-		DZA65_RS14685	0.31	-1.0
3,193,000	-		DZA65_RS14685	0.31	+0.1
3,193,000	-		DZA65_RS14685	0.31	-0.4
3,193,000	-		DZA65_RS14685	0.31	-0.1
3,193,003	+		DZA65_RS14685	0.32	+1.6
3,193,003	+		DZA65_RS14685	0.32	-0.8
3,193,003	+		DZA65_RS14685	0.32	-0.1
3,193,004	-		DZA65_RS14685	0.32	-0.5
3,193,004	-		DZA65_RS14685	0.32	-0.9
3,193,029	+		DZA65_RS14685	0.35	+0.2
3,193,029	+		DZA65_RS14685	0.35	-0.6
3,193,029	+		DZA65_RS14685	0.35	-0.2
3,193,029	+		DZA65_RS14685	0.35	-0.2
3,193,029	+		DZA65_RS14685	0.35	-1.9
3,193,029	+		DZA65_RS14685	0.35	+0.9
3,193,029	+		DZA65_RS14685	0.35	-0.8
3,193,029	+		DZA65_RS14685	0.35	-1.2
3,193,029	+		DZA65_RS14685	0.35	-1.4
3,193,030	-		DZA65_RS14685	0.35	+0.4
3,193,030	-		DZA65_RS14685	0.35	-0.1
3,193,030	-		DZA65_RS14685	0.35	-0.1
3,193,030	-		DZA65_RS14685	0.35	+1.0
3,193,030	-		DZA65_RS14685	0.35	+0.7
3,193,030	-		DZA65_RS14685	0.35	-0.0
3,193,030	-		DZA65_RS14685	0.35	+0.8
3,193,030	-		DZA65_RS14685	0.35	-0.2
3,193,030	-		DZA65_RS14685	0.35	-0.6
3,193,030	-		DZA65_RS14685	0.35	-1.0
3,193,030	-		DZA65_RS14685	0.35	+1.4
3,193,033	+		DZA65_RS14685	0.36	-0.4
3,193,033	+		DZA65_RS14685	0.36	+0.7
3,193,033	+		DZA65_RS14685	0.36	-0.8
3,193,033	+		DZA65_RS14685	0.36	-0.5
3,193,033	+		DZA65_RS14685	0.36	-1.4
3,193,033	+		DZA65_RS14685	0.36	+1.0
3,193,033	+		DZA65_RS14685	0.36	+0.1
3,193,033	+		DZA65_RS14685	0.36	+0.4
3,193,034	-		DZA65_RS14685	0.36	-2.6
3,193,034	-		DZA65_RS14685	0.36	+0.4
3,193,034	-		DZA65_RS14685	0.36	-1.2
3,193,034	-		DZA65_RS14685	0.36	-0.6
3,193,034	-		DZA65_RS14685	0.36	+0.3
3,193,034	-		DZA65_RS14685	0.36	+0.4
3,193,034	-		DZA65_RS14685	0.36	-0.4
3,193,034	-		DZA65_RS14685	0.36	+1.2
3,193,034	-		DZA65_RS14685	0.36	+1.3
3,193,034	-		DZA65_RS14685	0.36	+0.7
3,193,111	+		DZA65_RS14685	0.47	+1.6
3,193,111	+		DZA65_RS14685	0.47	+0.1
3,193,111	+		DZA65_RS14685	0.47	+1.4
3,193,112	-		DZA65_RS14685	0.47	+0.2
3,193,112	-		DZA65_RS14685	0.47	+0.1
3,193,112	-		DZA65_RS14685	0.47	+0.0
3,193,112	-		DZA65_RS14685	0.47	+0.6
3,193,112	-		DZA65_RS14685	0.47	-1.4
3,193,114	+		DZA65_RS14685	0.47	+1.0
3,193,114	+		DZA65_RS14685	0.47	+0.4
3,193,115	-		DZA65_RS14685	0.47	+0.2
3,193,115	-		DZA65_RS14685	0.47	+1.2
3,193,115	-		DZA65_RS14685	0.47	-0.9
3,193,226	-		DZA65_RS14685	0.62	+0.5
3,193,297	+		DZA65_RS14685	0.72	-0.1
3,193,300	+		DZA65_RS14685	0.73	-1.2
3,193,301	-		DZA65_RS14685	0.73	-0.2
3,193,301	-		DZA65_RS14685	0.73	-0.6
3,193,301	-		DZA65_RS14685	0.73	+0.2
3,193,301	-		DZA65_RS14685	0.73	-0.3
3,193,301	-		DZA65_RS14685	0.73	+1.1
3,193,301	-		DZA65_RS14685	0.73	+1.0
3,193,303	+		DZA65_RS14685	0.73	-0.5
3,193,303	+		DZA65_RS14685	0.73	+0.9
3,193,304	-		DZA65_RS14685	0.73	-1.0
3,193,304	-		DZA65_RS14685	0.73	-0.0
3,193,304	-		DZA65_RS14685	0.73	-1.7
3,193,321	+		DZA65_RS14685	0.75	+0.3
3,193,352	+		DZA65_RS14685	0.80	+0.3
3,193,352	+		DZA65_RS14685	0.80	-0.3
3,193,399	+		DZA65_RS14685	0.86	-0.9
3,193,399	+		DZA65_RS14685	0.86	-0.9
3,193,399	+		DZA65_RS14685	0.86	-0.2
3,193,400	-		DZA65_RS14685	0.86	-1.6
3,193,430	+				-0.1
3,193,430	+				-1.6
3,193,430	+				-1.2
3,193,430	+				+0.1
3,193,431	-				-0.9
3,193,431	-				+0.4
3,193,431	-				+0.1
3,193,431	-				-0.5
3,193,431	-				-0.4
3,193,431	-				+1.2
3,193,431	-				-0.7
3,193,431	-				+0.2
3,193,527	+				-2.2
3,193,527	+				+0.9
3,193,527	+				-0.9
3,193,528	-				+0.4
3,193,528	-				+0.4
3,193,528	-				-1.6
3,193,528	-				+0.8
3,193,528	-				+0.4
3,193,538	+				-0.7