Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,180,566	+		DZA65_RS14610	0.70	+0.5
3,180,578	+		DZA65_RS14610	0.72	+1.2
3,180,578	+		DZA65_RS14610	0.72	-1.2
3,180,578	+		DZA65_RS14610	0.72	+0.7
3,180,578	+		DZA65_RS14610	0.72	-0.1
3,180,578	+		DZA65_RS14610	0.72	+0.1
3,180,578	+		DZA65_RS14610	0.72	+0.3
3,180,579	-		DZA65_RS14610	0.72	-0.2
3,180,579	-		DZA65_RS14610	0.72	-1.1
3,180,632	+		DZA65_RS14610	0.78	-1.0
3,180,632	+		DZA65_RS14610	0.78	+0.1
3,180,633	-		DZA65_RS14610	0.78	+0.8
3,180,633	-		DZA65_RS14610	0.78	+0.4
3,180,633	-		DZA65_RS14610	0.78	+0.9
3,180,635	+		DZA65_RS14610	0.78	-1.4
3,180,636	-		DZA65_RS14610	0.78	-3.0
3,180,636	-		DZA65_RS14610	0.78	+0.6
3,180,636	-		DZA65_RS14610	0.78	-0.5
3,180,636	-		DZA65_RS14610	0.78	+0.5
3,180,636	-		DZA65_RS14610	0.78	+1.5
3,180,696	+		DZA65_RS14610	0.85	-0.1
3,180,697	-		DZA65_RS14610	0.85	+0.4
3,180,732	-		DZA65_RS14610	0.89	-0.0
3,180,732	-		DZA65_RS14610	0.89	+1.0
3,180,793	+				+0.0
3,180,793	+				+0.1
3,180,793	+				-0.1
3,180,793	+				-1.4
3,180,793	+				-0.8
3,180,794	-				+2.2
3,180,794	-				+0.8
3,180,821	+				+0.1
3,180,823	+				-0.8
3,180,823	+				+0.3
3,180,824	-				+0.8
3,180,824	-				+1.8
3,180,824	-				-0.8
3,180,824	-				-0.6
3,180,824	-				-0.1
3,180,824	-				+1.9
3,180,827	+				-0.6
3,180,850	+				+2.1
3,180,850	+				-0.6
3,180,851	-				-0.4
3,180,851	-				-0.2
3,180,864	+				-0.1
3,180,865	-				+0.1
3,180,865	-				+0.0
3,180,865	-				-0.6
3,180,893	-		DZA65_RS14615	0.12	+0.4
3,180,893	-		DZA65_RS14615	0.12	-1.6
3,180,895	+		DZA65_RS14615	0.12	+0.4
3,180,947	+		DZA65_RS14615	0.22	+0.1
3,180,948	-		DZA65_RS14615	0.22	-0.2
3,180,948	-		DZA65_RS14615	0.22	-2.2
3,180,987	+		DZA65_RS14615	0.29	-1.2
3,181,009	-		DZA65_RS14615	0.33	+0.1
3,181,009	-		DZA65_RS14615	0.33	+0.1
3,181,016	-		DZA65_RS14615	0.34	-1.0
3,181,095	+		DZA65_RS14615	0.48	-1.1
3,181,096	-				+1.7
3,181,096	-		DZA65_RS14615	0.48	+0.5
3,181,096	-		DZA65_RS14615	0.48	+0.4
3,181,103	-		DZA65_RS14615	0.50	-1.8
3,181,103	-		DZA65_RS14615	0.50	-0.2
3,181,103	-		DZA65_RS14615	0.50	-0.5
3,181,103	-		DZA65_RS14615	0.50	+0.0
3,181,149	+		DZA65_RS14615	0.58	+1.7
3,181,178	-		DZA65_RS14615	0.63	-0.4
3,181,178	-		DZA65_RS14615	0.63	+1.1
3,181,186	+		DZA65_RS14615	0.65	+1.2
3,181,186	+		DZA65_RS14615	0.65	-2.8
3,181,187	-		DZA65_RS14615	0.65	-0.2
3,181,187	-		DZA65_RS14615	0.65	+0.5
3,181,187	-		DZA65_RS14615	0.65	-0.6
3,181,194	+		DZA65_RS14615	0.66	-1.8
3,181,204	-		DZA65_RS14615	0.68	-0.1
3,181,204	-		DZA65_RS14615	0.68	-0.5
3,181,261	-		DZA65_RS14615	0.78	+1.1
3,181,261	-		DZA65_RS14615	0.78	-0.8
3,181,281	+		DZA65_RS14615	0.82	-0.8
3,181,357	+				+0.7
3,181,358	-				-0.8
3,181,376	-				-0.6
3,181,384	-				+0.5
3,181,386	+				-1.1
3,181,386	+				+0.4
3,181,386	+				-1.0
3,181,387	-				-0.5
3,181,387	-				+0.2
3,181,387	-				-0.1
3,181,387	-				-0.3
3,181,387	-				+0.3
3,181,387	-				+1.1
3,181,387	-				-0.3
3,181,407	-				-0.6
3,181,407	-				+0.7
3,181,407	-				-0.2
3,181,407	-				+0.6
3,181,415	+				-0.2
3,181,416	-				+0.2
3,181,416	-				+0.0
3,181,419	-				-0.6
3,181,419	-				-2.2
3,181,430	+				-0.5
3,181,431	-				-0.1
3,181,431	-				+0.8
3,181,434	+				+0.2
3,181,434	+				-0.2
3,181,435	-				-1.3
3,181,487	+				+0.4
3,181,488	-				-0.4
3,181,488	-				+0.7
3,181,519	-				-0.9
3,181,519	-				+0.6
3,181,587	+				+1.4
3,181,588	-				-0.3
3,181,680	+		DZA65_RS14620	0.24	+1.2
3,181,680	+		DZA65_RS14620	0.24	-0.6
3,181,680	+		DZA65_RS14620	0.24	-0.6
3,181,680	+		DZA65_RS14620	0.24	+0.6
3,181,681	-		DZA65_RS14620	0.24	+0.4
3,181,681	-		DZA65_RS14620	0.24	-0.4
3,181,681	-		DZA65_RS14620	0.24	+0.4
3,181,681	-		DZA65_RS14620	0.24	-0.1
3,181,681	-		DZA65_RS14620	0.24	+0.6
3,181,695	+		DZA65_RS14620	0.27	-2.2
3,181,696	-		DZA65_RS14620	0.27	-1.2
3,181,754	+		DZA65_RS14620	0.38	-0.4
3,181,754	+				+0.4
3,181,754	+		DZA65_RS14620	0.38	-2.1
3,181,755	-		DZA65_RS14620	0.38	-0.1
3,181,774	+		DZA65_RS14620	0.42	-0.6
3,181,774	+		DZA65_RS14620	0.42	+0.3
3,181,774	+		DZA65_RS14620	0.42	-0.2
3,181,775	-		DZA65_RS14620	0.42	-1.6
3,181,784	+		DZA65_RS14620	0.44	-1.8
3,181,785	-		DZA65_RS14620	0.44	+0.5
3,181,785	-		DZA65_RS14620	0.44	-2.2
3,181,815	+		DZA65_RS14620	0.50	+0.0
3,181,815	+		DZA65_RS14620	0.50	+0.7
3,181,816	-		DZA65_RS14620	0.50	+0.4
3,181,866	+		DZA65_RS14620	0.60	-1.0
3,181,867	-		DZA65_RS14620	0.60	+2.2
3,181,867	-		DZA65_RS14620	0.60	-0.3
3,181,896	+		DZA65_RS14620	0.65	-0.1
3,181,909	+		DZA65_RS14620	0.68	+0.4
3,181,909	+		DZA65_RS14620	0.68	-0.6
3,181,909	+		DZA65_RS14620	0.68	-0.2
3,181,909	+		DZA65_RS14620	0.68	-1.3
3,181,910	-		DZA65_RS14620	0.68	+0.2
3,181,910	-		DZA65_RS14620	0.68	-0.4
3,181,910	-		DZA65_RS14620	0.68	-0.1
3,181,910	-		DZA65_RS14620	0.68	+1.4
3,181,910	-		DZA65_RS14620	0.68	+0.5
3,181,910	-		DZA65_RS14620	0.68	-2.0
3,181,912	-		DZA65_RS14620	0.68	-1.8
3,181,930	+		DZA65_RS14620	0.72	-0.4
3,181,931	-		DZA65_RS14620	0.72	-1.6
3,181,983	+		DZA65_RS14620	0.82	-0.3
3,181,984	-		DZA65_RS14620	0.82	-0.6
3,181,985	+		DZA65_RS14620	0.82	+0.4
3,181,985	+		DZA65_RS14620	0.82	+0.8
3,181,985	+		DZA65_RS14620	0.82	-0.2
3,181,985	+		DZA65_RS14620	0.82	-0.4
3,181,985	+		DZA65_RS14620	0.82	-1.2
3,181,985	+		DZA65_RS14620	0.82	+1.6
3,181,985	+		DZA65_RS14620	0.82	-0.7
3,181,986	-		DZA65_RS14620	0.83	+0.4
3,181,986	-		DZA65_RS14620	0.83	+0.1
3,181,986	-		DZA65_RS14620	0.83	+0.6
3,181,986	-		DZA65_RS14620	0.83	-1.1
3,181,986	-		DZA65_RS14620	0.83	-1.3
3,181,986	-		DZA65_RS14620	0.83	-0.4
3,181,986	-		DZA65_RS14620	0.83	+0.6
3,181,986	-		DZA65_RS14620	0.83	-1.6
3,181,986	-		DZA65_RS14620	0.83	-1.0
3,181,986	-		DZA65_RS14620	0.83	+0.4
3,181,986	-		DZA65_RS14620	0.83	-0.5
3,181,988	+		DZA65_RS14620	0.83	+0.1
3,181,988	+		DZA65_RS14620	0.83	+3.2
3,181,988	+		DZA65_RS14620	0.83	-0.3
3,181,988	+		DZA65_RS14620	0.83	-0.4
3,181,988	+		DZA65_RS14620	0.83	-0.4
3,181,988	+		DZA65_RS14620	0.83	-0.6
3,181,988	+		DZA65_RS14620	0.83	-0.4
3,181,988	+		DZA65_RS14620	0.83	-0.7
3,181,988	+		DZA65_RS14620	0.83	+0.0
3,181,988	+		DZA65_RS14620	0.83	-1.1
3,181,988	+		DZA65_RS14620	0.83	-0.7
3,181,989	-		DZA65_RS14620	0.83	+0.5
3,181,989	-		DZA65_RS14620	0.83	-0.1
3,181,989	-		DZA65_RS14620	0.83	+0.3
3,181,989	-		DZA65_RS14620	0.83	-0.0
3,181,989	-		DZA65_RS14620	0.83	-1.0
3,181,989	-		DZA65_RS14620	0.83	+0.1
3,181,989	-		DZA65_RS14620	0.83	+0.8
3,181,989	-		DZA65_RS14620	0.83	-1.9
3,181,989	-		DZA65_RS14620	0.83	-0.1
3,182,007	+		DZA65_RS14620	0.87	-0.0
3,182,007	+		DZA65_RS14620	0.87	-0.6
3,182,077	+				-0.1
3,182,096	+				-0.8
3,182,096	+				+0.4
3,182,199	+				+0.1
3,182,218	+				+0.2
3,182,218	+				+0.4
3,182,218	+				+0.0
3,182,242	+				+0.4
3,182,242	+				-1.5
3,182,242	+				+0.5
3,182,242	+				+0.4
3,182,243	-				+0.7
3,182,243	-				-1.6
3,182,243	-				+0.4
3,182,243	-				+0.3
3,182,243	-				-2.4
3,182,246	+				-0.4
3,182,246	+				+0.0
3,182,246	+				-0.7
3,182,246	+				+0.2
3,182,247	-				+0.1
3,182,247	-				+1.1
3,182,247	-				-0.3
3,182,247	-				+0.9
3,182,304	+				-0.2
3,182,305	-				+0.1
3,182,305	-				-0.6
3,182,359	+				+0.2
3,182,359	+				-0.2
3,182,359	+				-0.2
3,182,359	+				-2.0
3,182,359	+				-0.3
3,182,359	+				-0.3
3,182,359	+				+1.6
3,182,359	+				+0.6
3,182,359	+				-2.2
3,182,359	+				+0.0
3,182,360	-				-1.4
3,182,360	-				+0.5
3,182,360	-				+1.5
3,182,360	-				+0.6
3,182,360	-				+0.1
3,182,360	-				+0.6
3,182,573	-		DZA65_RS14625	0.19	-0.3
3,182,619	+		DZA65_RS14625	0.23	-0.2
3,182,619	+		DZA65_RS14625	0.23	+0.4
3,182,620	-		DZA65_RS14625	0.23	+0.2
3,182,626	+		DZA65_RS14625	0.24	-0.2
3,182,626	+		DZA65_RS14625	0.24	+1.3
3,182,626	+		DZA65_RS14625	0.24	-0.2
3,182,666	-		DZA65_RS14625	0.27	+0.6
3,182,666	-		DZA65_RS14625	0.27	+0.1
3,182,666	-		DZA65_RS14625	0.27	-0.3
3,182,667	+		DZA65_RS14625	0.27	+1.6
3,182,667	+		DZA65_RS14625	0.27	+0.4
3,182,667	+		DZA65_RS14625	0.27	+0.6
3,182,667	+		DZA65_RS14625	0.27	-1.0
3,182,667	+		DZA65_RS14625	0.27	-0.1
3,182,668	-		DZA65_RS14625	0.27	-0.4
3,182,668	-		DZA65_RS14625	0.27	-0.2
3,182,668	-				+1.9
3,182,668	-		DZA65_RS14625	0.27	+0.7
3,182,668	-		DZA65_RS14625	0.27	-0.2
3,182,684	-		DZA65_RS14625	0.29	+1.0
3,182,732	+		DZA65_RS14625	0.33	-0.8
3,182,733	-		DZA65_RS14625	0.33	+0.4
3,182,765	+		DZA65_RS14625	0.35	+0.9
3,182,765	+		DZA65_RS14625	0.35	+0.5
3,182,765	+		DZA65_RS14625	0.35	-0.3
3,182,765	+		DZA65_RS14625	0.35	+0.7
3,182,765	+		DZA65_RS14625	0.35	-0.1
3,182,766	-		DZA65_RS14625	0.35	-0.4
3,182,766	-		DZA65_RS14625	0.35	-0.8
3,182,766	-		DZA65_RS14625	0.35	+0.4
3,182,766	-		DZA65_RS14625	0.35	-0.3
3,182,766	-		DZA65_RS14625	0.35	-0.2
3,182,766	-		DZA65_RS14625	0.35	+1.1
3,182,766	-		DZA65_RS14625	0.35	-0.0
3,182,766	-		DZA65_RS14625	0.35	+1.4
3,182,822	+		DZA65_RS14625	0.40	+0.1
3,182,822	+		DZA65_RS14625	0.40	-0.2
3,182,822	+		DZA65_RS14625	0.40	+0.2
3,182,822	+		DZA65_RS14625	0.40	-1.6
3,182,822	+		DZA65_RS14625	0.40	+0.9
3,182,822	+		DZA65_RS14625	0.40	-0.3
3,182,822	+		DZA65_RS14625	0.40	-0.6
3,182,823	-		DZA65_RS14625	0.40	-0.4
3,182,874	-		DZA65_RS14625	0.44	+0.6
3,182,882	+		DZA65_RS14625	0.45	+0.2
3,182,882	+		DZA65_RS14625	0.45	-0.1
3,182,882	+		DZA65_RS14625	0.45	-0.1
3,182,883	-		DZA65_RS14625	0.45	+0.6
3,182,883	-		DZA65_RS14625	0.45	+0.1
3,182,891	+		DZA65_RS14625	0.46	-1.0
3,182,891	+		DZA65_RS14625	0.46	+0.1
3,182,891	+		DZA65_RS14625	0.46	+1.4
3,182,891	+		DZA65_RS14625	0.46	+0.0
3,183,058	+		DZA65_RS14625	0.60	-1.5
3,183,058	+		DZA65_RS14625	0.60	+0.6
3,183,058	+		DZA65_RS14625	0.60	+1.1
3,183,059	-		DZA65_RS14625	0.60	+1.1
3,183,059	-		DZA65_RS14625	0.60	-2.2