Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,173,960	+		DZA65_RS14575	0.89	-0.1
3,173,960	+		DZA65_RS14575	0.89	+0.8
3,173,960	+		DZA65_RS14575	0.89	+2.3
3,173,960	+		DZA65_RS14575	0.89	+0.8
3,173,960	+		DZA65_RS14575	0.89	+1.3
3,173,960	+		DZA65_RS14575	0.89	-0.8
3,173,961	-		DZA65_RS14575	0.89	-0.9
3,173,961	-		DZA65_RS14575	0.89	+0.3
3,173,961	-		DZA65_RS14575	0.89	+1.3
3,173,961	-		DZA65_RS14575	0.89	-0.1
3,173,968	+				-1.7
3,173,968	+				+0.3
3,173,969	-				-0.1
3,173,969	-				-1.2
3,173,969	-				-1.2
3,173,980	-				+1.1
3,173,980	-				-0.8
3,173,982	-				+0.6
3,173,994	-				+0.9
3,173,994	-				+1.2
3,174,003	+				-0.7
3,174,004	-				-1.4
3,174,112	-		DZA65_RS14580	0.12	+0.6
3,174,129	+		DZA65_RS14580	0.14	+0.5
3,174,129	+		DZA65_RS14580	0.14	-0.2
3,174,130	-		DZA65_RS14580	0.14	-0.7
3,174,155	+		DZA65_RS14580	0.17	-2.2
3,174,156	-		DZA65_RS14580	0.18	+0.2
3,174,166	-		DZA65_RS14580	0.19	-0.3
3,174,167	+		DZA65_RS14580	0.19	+0.4
3,174,167	+		DZA65_RS14580	0.19	-0.0
3,174,167	+		DZA65_RS14580	0.19	+0.5
3,174,167	+		DZA65_RS14580	0.19	-1.5
3,174,168	-		DZA65_RS14580	0.19	+0.1
3,174,168	-		DZA65_RS14580	0.19	-0.9
3,174,168	-		DZA65_RS14580	0.19	-1.6
3,174,172	+		DZA65_RS14580	0.19	+0.3
3,174,173	-		DZA65_RS14580	0.20	+0.5
3,174,183	+		DZA65_RS14580	0.21	-0.2
3,174,202	+		DZA65_RS14580	0.23	+0.1
3,174,202	+		DZA65_RS14580	0.23	+0.1
3,174,202	+		DZA65_RS14580	0.23	-1.0
3,174,202	+		DZA65_RS14580	0.23	-0.1
3,174,203	-		DZA65_RS14580	0.23	+0.6
3,174,203	-		DZA65_RS14580	0.23	-1.0
3,174,331	+		DZA65_RS14580	0.38	+0.2
3,174,331	+		DZA65_RS14580	0.38	+0.3
3,174,331	+		DZA65_RS14580	0.38	+0.1
3,174,331	+		DZA65_RS14580	0.38	-0.8
3,174,332	-		DZA65_RS14580	0.38	+0.0
3,174,332	-		DZA65_RS14580	0.38	-2.0
3,174,332	-		DZA65_RS14580	0.38	-0.2
3,174,332	-		DZA65_RS14580	0.38	+0.1
3,174,371	+		DZA65_RS14580	0.43	+0.4
3,174,371	+		DZA65_RS14580	0.43	+0.5
3,174,371	+		DZA65_RS14580	0.43	+0.0
3,174,372	-		DZA65_RS14580	0.43	-0.6
3,174,402	+		DZA65_RS14580	0.47	+0.7
3,174,430	+		DZA65_RS14580	0.50	-2.0
3,174,431	-		DZA65_RS14580	0.50	-0.1
3,174,459	+		DZA65_RS14580	0.53	-1.0
3,174,459	+		DZA65_RS14580	0.53	+0.4
3,174,460	-		DZA65_RS14580	0.53	-0.2
3,174,460	-		DZA65_RS14580	0.53	-0.2
3,174,525	+		DZA65_RS14580	0.61	-0.5
3,174,526	-		DZA65_RS14580	0.61	-0.6
3,174,540	+		DZA65_RS14580	0.63	-0.5
3,174,613	-		DZA65_RS14580	0.71	-0.4
3,174,617	+		DZA65_RS14580	0.72	-0.0
3,174,617	+		DZA65_RS14580	0.72	+0.4
3,174,617	+		DZA65_RS14580	0.72	-1.0
3,174,617	+		DZA65_RS14580	0.72	+1.1
3,174,617	+		DZA65_RS14580	0.72	+0.6
3,174,617	+		DZA65_RS14580	0.72	+0.7
3,174,617	+		DZA65_RS14580	0.72	+0.9
3,174,617	+		DZA65_RS14580	0.72	+1.4
3,174,618	-		DZA65_RS14580	0.72	-0.3
3,174,618	-		DZA65_RS14580	0.72	+0.1
3,174,618	-		DZA65_RS14580	0.72	-0.2
3,174,618	-		DZA65_RS14580	0.72	+0.4
3,174,618	-				+1.7
3,174,618	-		DZA65_RS14580	0.72	+0.8
3,174,618	-		DZA65_RS14580	0.72	-0.5
3,174,618	-		DZA65_RS14580	0.72	+0.4
3,174,618	-		DZA65_RS14580	0.72	+0.8
3,174,620	+		DZA65_RS14580	0.72	+0.0
3,174,620	+		DZA65_RS14580	0.72	-0.1
3,174,621	-		DZA65_RS14580	0.72	+0.9
3,174,639	+		DZA65_RS14580	0.74	+0.9
3,174,640	-		DZA65_RS14580	0.75	+0.4
3,174,643	-		DZA65_RS14580	0.75	-1.8
3,174,643	-		DZA65_RS14580	0.75	-0.5
3,174,643	-		DZA65_RS14580	0.75	+2.4
3,174,643	-		DZA65_RS14580	0.75	-0.3
3,174,643	-		DZA65_RS14580	0.75	-1.2
3,174,644	+		DZA65_RS14580	0.75	+0.4
3,174,644	+		DZA65_RS14580	0.75	-0.5
3,174,644	+		DZA65_RS14580	0.75	+0.9
3,174,644	+		DZA65_RS14580	0.75	-1.5
3,174,644	+		DZA65_RS14580	0.75	-0.3
3,174,644	+		DZA65_RS14580	0.75	+0.0
3,174,644	+		DZA65_RS14580	0.75	-1.0
3,174,644	+		DZA65_RS14580	0.75	+0.6
3,174,645	-		DZA65_RS14580	0.75	-0.1
3,174,645	-		DZA65_RS14580	0.75	-0.1
3,174,645	-		DZA65_RS14580	0.75	+1.2
3,174,645	-		DZA65_RS14580	0.75	+0.0
3,174,645	-		DZA65_RS14580	0.75	-0.2
3,174,691	+		DZA65_RS14580	0.81	+0.4
3,174,691	+		DZA65_RS14580	0.81	-0.5
3,174,692	-		DZA65_RS14580	0.81	-2.2
3,174,692	-		DZA65_RS14580	0.81	-1.8
3,174,726	+		DZA65_RS14580	0.85	-1.6
3,174,727	-		DZA65_RS14580	0.85	+0.0
3,174,727	-		DZA65_RS14580	0.85	-0.3
3,174,727	-		DZA65_RS14580	0.85	+0.8
3,174,731	-		DZA65_RS14580	0.85	-2.2
3,174,731	-		DZA65_RS14580	0.85	+0.2
3,174,847	+				-1.0
3,174,847	+				-2.0
3,174,847	+				-1.1
3,174,847	+				+0.7
3,174,848	-				-0.6
3,174,848	-				-1.1
3,174,848	-				+0.2
3,174,848	-				-0.6
3,174,848	-				+1.1
3,174,849	+				+0.4
3,174,849	+				-1.4
3,174,849	+				+0.4
3,174,849	+				+1.1
3,174,850	-				-0.1
3,174,850	-				-1.6
3,174,859	-				+0.4
3,174,876	+				+0.4
3,174,876	+				-0.8
3,174,877	-				+0.9
3,174,877	-				+0.5
3,174,883	+				+0.4
3,174,883	+				-0.9
3,174,883	+				+0.6
3,174,883	+				-1.6
3,174,887	+				+0.9
3,174,887	+				-0.3
3,174,887	+				-0.9
3,174,888	-				+0.9
3,174,888	-				+1.2
3,174,888	-				+0.6
3,174,888	-				-1.2
3,174,926	-				+1.0
3,174,926	-				+0.4
3,174,934	+				-0.2
3,174,934	+				-3.0
3,174,935	-				-0.6
3,175,042	+		DZA65_RS14585	0.20	+0.6
3,175,042	+		DZA65_RS14585	0.20	-0.1
3,175,043	-		DZA65_RS14585	0.20	+1.2
3,175,062	+		DZA65_RS14585	0.23	+0.1
3,175,063	-		DZA65_RS14585	0.23	+1.1
3,175,069	-		DZA65_RS14585	0.24	-2.0
3,175,069	-		DZA65_RS14585	0.24	+0.0
3,175,141	+		DZA65_RS14585	0.36	+0.8
3,175,141	+		DZA65_RS14585	0.36	+0.5
3,175,141	+		DZA65_RS14585	0.36	+1.3
3,175,142	-		DZA65_RS14585	0.36	-0.0
3,175,142	-		DZA65_RS14585	0.36	-0.0
3,175,142	-		DZA65_RS14585	0.36	+0.8
3,175,191	-		DZA65_RS14585	0.44	+0.1
3,175,204	+		DZA65_RS14585	0.46	-0.4
3,175,204	+		DZA65_RS14585	0.46	-0.2
3,175,204	+		DZA65_RS14585	0.46	-1.0
3,175,204	+		DZA65_RS14585	0.46	+0.9
3,175,204	+		DZA65_RS14585	0.46	+0.6
3,175,205	-		DZA65_RS14585	0.46	+0.0
3,175,205	-		DZA65_RS14585	0.46	-2.2
3,175,205	-		DZA65_RS14585	0.46	+0.2
3,175,238	+		DZA65_RS14585	0.51	+0.4
3,175,350	+		DZA65_RS14585	0.68	+0.4
3,175,350	+		DZA65_RS14585	0.68	+2.5
3,175,350	+		DZA65_RS14585	0.68	+0.8
3,175,350	+		DZA65_RS14585	0.68	-1.4
3,175,350	+		DZA65_RS14585	0.68	+0.4
3,175,351	-		DZA65_RS14585	0.69	+0.4
3,175,351	-		DZA65_RS14585	0.69	-2.2
3,175,351	-		DZA65_RS14585	0.69	+1.3
3,175,382	+		DZA65_RS14585	0.73	+0.8
3,175,382	+		DZA65_RS14585	0.73	-1.2
3,175,404	+		DZA65_RS14585	0.77	-0.2
3,175,404	+		DZA65_RS14585	0.77	-0.5
3,175,405	-		DZA65_RS14585	0.77	+0.3
3,175,405	-		DZA65_RS14585	0.77	-3.2
3,175,405	-		DZA65_RS14585	0.77	-0.2
3,175,405	-		DZA65_RS14585	0.77	-0.5
3,175,483	-		DZA65_RS14585	0.89	+0.6
3,175,528	+				+0.8
3,175,528	+				-0.2
3,175,529	-				-0.2
3,175,532	+				+0.2
3,175,533	-				+0.5
3,175,533	-				+0.0
3,175,533	-				-1.2
3,175,533	-				-1.6
3,175,536	+				+0.7
3,175,536	+				-1.9
3,175,536	+				-1.0
3,175,537	-				+0.6
3,175,537	-				-0.8
3,175,537	-				+0.7
3,175,537	-				+0.7
3,175,537	-				-2.2
3,175,537	-				+0.9
3,175,537	-				-0.5
3,175,569	-				+1.1
3,175,572	+				+0.4
3,175,573	-				+0.7
3,175,573	-				+1.2
3,175,573	-				-0.8
3,175,575	+				-0.9
3,175,575	+				+0.5
3,175,585	+				-1.6
3,175,586	-				+0.9
3,175,606	+				+0.8
3,175,607	-				+0.5
3,175,607	-				+0.5
3,175,608	+				+0.5
3,175,608	+				+0.6
3,175,608	+				+0.1
3,175,608	+				-0.3
3,175,608	+				-0.0
3,175,609	-				-0.1
3,175,609	-				+0.2
3,175,609	-				+0.9
3,175,609	-				+0.9
3,175,610	+				+0.1
3,175,610	+				-0.5
3,175,610	+				+0.9
3,175,610	+				+0.8
3,175,611	-				-0.5
3,175,611	-				+0.4
3,175,612	+				-0.6
3,175,612	+				+1.2
3,175,692	+				-1.2
3,175,692	+				+0.6
3,175,693	-				+0.1
3,175,693	-				+0.5
3,175,693	-				-1.1
3,175,696	+				-0.6
3,175,697	-				+0.7
3,175,697	-				-0.6
3,175,728	+				-0.1
3,175,748	+				+0.0
3,175,752	+				-0.5
3,175,752	+				+0.9
3,175,752	+				+0.5
3,175,752	+				-2.5
3,175,752	+				-0.1
3,175,752	+				-1.5
3,175,753	-		DZA65_RS14590	0.10	-1.1
3,175,753	-		DZA65_RS14590	0.10	+1.2
3,175,753	-		DZA65_RS14590	0.10	-0.2
3,175,753	-		DZA65_RS14590	0.10	+0.4
3,175,753	-		DZA65_RS14590	0.10	-0.1
3,175,753	-		DZA65_RS14590	0.10	+1.4
3,175,754	+		DZA65_RS14590	0.10	+0.1
3,175,754	+		DZA65_RS14590	0.10	+1.6
3,175,754	+		DZA65_RS14590	0.10	-0.1
3,175,755	-		DZA65_RS14590	0.10	-0.9
3,175,755	-		DZA65_RS14590	0.10	-0.9
3,175,755	-		DZA65_RS14590	0.10	-0.2
3,175,755	-		DZA65_RS14590	0.10	+0.0
3,175,755	-		DZA65_RS14590	0.10	-0.5
3,175,758	+		DZA65_RS14590	0.11	-1.8
3,175,758	+		DZA65_RS14590	0.11	-0.1
3,175,758	+		DZA65_RS14590	0.11	-0.9
3,175,758	+		DZA65_RS14590	0.11	+0.7
3,175,758	+		DZA65_RS14590	0.11	+0.2
3,175,758	+		DZA65_RS14590	0.11	-0.2
3,175,758	+		DZA65_RS14590	0.11	+1.2
3,175,759	-		DZA65_RS14590	0.11	+0.1
3,175,759	-		DZA65_RS14590	0.11	+0.9
3,175,759	-		DZA65_RS14590	0.11	-2.2
3,175,759	-		DZA65_RS14590	0.11	-2.6
3,175,824	+		DZA65_RS14590	0.18	+2.2
3,175,824	+		DZA65_RS14590	0.18	-0.2
3,175,825	-		DZA65_RS14590	0.18	-0.0
3,175,827	+		DZA65_RS14590	0.18	+1.6
3,175,827	+		DZA65_RS14590	0.18	+1.2
3,175,828	-		DZA65_RS14590	0.18	-1.2
3,175,828	-		DZA65_RS14590	0.18	-0.1
3,175,828	-		DZA65_RS14590	0.18	-1.1
3,175,828	-		DZA65_RS14590	0.18	-0.1
3,175,833	+		DZA65_RS14590	0.19	-0.1
3,175,833	+		DZA65_RS14590	0.19	+0.4
3,175,834	-		DZA65_RS14590	0.19	+0.4
3,175,834	-		DZA65_RS14590	0.19	+0.7
3,175,834	-		DZA65_RS14590	0.19	+1.2
3,175,867	+		DZA65_RS14590	0.23	+0.4
3,175,867	+		DZA65_RS14590	0.23	-0.9
3,175,867	+		DZA65_RS14590	0.23	+0.6
3,175,867	+				-1.6
3,175,867	+		DZA65_RS14590	0.23	-0.6
3,175,867	+				+1.4
3,175,868	-		DZA65_RS14590	0.23	+0.6
3,175,868	-		DZA65_RS14590	0.23	+0.5
3,175,868	-		DZA65_RS14590	0.23	-1.2
3,175,868	-		DZA65_RS14590	0.23	-1.2
3,175,889	+		DZA65_RS14590	0.25	-1.0
3,175,889	+		DZA65_RS14590	0.25	-1.1
3,176,085	+		DZA65_RS14590	0.47	+0.1
3,176,087	+		DZA65_RS14590	0.47	+0.9
3,176,087	+		DZA65_RS14590	0.47	-2.5
3,176,088	-		DZA65_RS14590	0.47	-0.3
3,176,088	-		DZA65_RS14590	0.47	+0.1
3,176,093	+				+0.4
3,176,124	-		DZA65_RS14590	0.51	-0.1
3,176,168	+		DZA65_RS14590	0.56	+1.2
3,176,168	+		DZA65_RS14590	0.56	+0.5
3,176,168	+		DZA65_RS14590	0.56	+0.2
3,176,181	+				+1.7
3,176,196	-		DZA65_RS14590	0.59	-0.2
3,176,247	+		DZA65_RS14590	0.65	-0.4
3,176,307	+		DZA65_RS14590	0.72	+0.1
3,176,307	+		DZA65_RS14590	0.72	+1.0
3,176,308	-		DZA65_RS14590	0.72	-0.6
3,176,308	-		DZA65_RS14590	0.72	-0.4
3,176,327	+		DZA65_RS14590	0.74	+0.4
3,176,327	+		DZA65_RS14590	0.74	-0.3
3,176,334	+		DZA65_RS14590	0.75	+0.4
3,176,334	+		DZA65_RS14590	0.75	+0.7
3,176,337	+		DZA65_RS14590	0.75	-0.9
3,176,399	-		DZA65_RS14590	0.82	+1.4
3,176,399	-		DZA65_RS14590	0.82	+0.6
3,176,407	-		DZA65_RS14590	0.83	-0.9
3,176,433	-		DZA65_RS14590	0.86	-1.5
3,176,433	-		DZA65_RS14590	0.86	-0.5
3,176,511	-				-0.6