Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14420

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,143,928	+		DZA65_RS14415	0.35	-0.8
3,144,542	-		DZA65_RS14415	0.81	+1.0
3,144,809	+				+0.1
3,144,829	+				-0.4
3,144,829	+				+0.7
3,144,829	+				-0.3
3,144,829	+				-0.1
3,144,830	-				-0.0
3,144,830	-				+0.2
3,144,830	-				+0.3
3,144,830	-				+0.0
3,144,931	-		DZA65_RS14420	0.26	-1.0
3,144,964	+		DZA65_RS14420	0.32	-0.3
3,144,964	+		DZA65_RS14420	0.32	-0.5
3,144,964	+		DZA65_RS14420	0.32	+0.2
3,144,964	+		DZA65_RS14420	0.32	+0.0
3,144,964	+		DZA65_RS14420	0.32	+1.6
3,144,965	-		DZA65_RS14420	0.33	-0.1
3,144,974	+		DZA65_RS14420	0.34	-1.0
3,144,974	+		DZA65_RS14420	0.34	+0.4
3,144,975	-		DZA65_RS14420	0.35	+0.3
3,144,975	-		DZA65_RS14420	0.35	-3.0
3,144,975	-		DZA65_RS14420	0.35	+1.0
3,144,975	-		DZA65_RS14420	0.35	-1.2
3,144,976	+		DZA65_RS14420	0.35	-0.0
3,144,977	-		DZA65_RS14420	0.35	-0.5
3,144,977	-		DZA65_RS14420	0.35	+0.3
3,144,977	-		DZA65_RS14420	0.35	+0.3
3,144,977	-		DZA65_RS14420	0.35	+0.5
3,144,977	-		DZA65_RS14420	0.35	-0.5
3,144,977	-		DZA65_RS14420	0.35	-0.5
3,145,025	+		DZA65_RS14420	0.45	+0.2
3,145,026	-		DZA65_RS14420	0.45	-0.1
3,145,026	-		DZA65_RS14420	0.45	+1.1
3,145,026	-		DZA65_RS14420	0.45	+0.5
3,145,026	-		DZA65_RS14420	0.45	+0.9
3,145,026	-		DZA65_RS14420	0.45	+1.5
3,145,042	+		DZA65_RS14420	0.48	+0.9
3,145,043	-		DZA65_RS14420	0.48	+0.5
3,145,043	-		DZA65_RS14420	0.48	-0.3
3,145,043	-		DZA65_RS14420	0.48	+0.6
3,145,043	-		DZA65_RS14420	0.48	+1.3
3,145,043	-		DZA65_RS14420	0.48	+0.4
3,145,046	+		DZA65_RS14420	0.49	-0.4
3,145,046	+		DZA65_RS14420	0.49	-0.4
3,145,046	+		DZA65_RS14420	0.49	+0.2
3,145,046	+		DZA65_RS14420	0.49	+0.8
3,145,047	-		DZA65_RS14420	0.49	+3.1
3,145,047	-		DZA65_RS14420	0.49	+0.8
3,145,047	-		DZA65_RS14420	0.49	-0.1
3,145,128	+		DZA65_RS14420	0.66	-0.9
3,145,128	+		DZA65_RS14420	0.66	-0.5
3,145,129	-		DZA65_RS14420	0.66	+1.8
3,145,129	-		DZA65_RS14420	0.66	+0.3
3,145,132	+		DZA65_RS14420	0.67	+0.7
3,145,132	+		DZA65_RS14420	0.67	+0.2
3,145,133	-		DZA65_RS14420	0.67	+0.0
3,145,133	-		DZA65_RS14420	0.67	-0.9
3,145,133	-		DZA65_RS14420	0.67	+0.7
3,145,133	-		DZA65_RS14420	0.67	+1.1
3,145,133	-		DZA65_RS14420	0.67	-3.0
3,145,133	-		DZA65_RS14420	0.67	+1.1
3,145,145	+		DZA65_RS14420	0.69	-0.3
3,145,145	+		DZA65_RS14420	0.69	+1.2
3,145,145	+		DZA65_RS14420	0.69	-1.3
3,145,145	+		DZA65_RS14420	0.69	-0.1
3,145,146	-		DZA65_RS14420	0.70	-0.4
3,145,146	-		DZA65_RS14420	0.70	+0.2
3,145,146	-		DZA65_RS14420	0.70	+1.6
3,145,146	-		DZA65_RS14420	0.70	-0.3
3,145,146	-		DZA65_RS14420	0.70	-0.4
3,145,146	-		DZA65_RS14420	0.70	-2.8
3,145,147	+		DZA65_RS14420	0.70	-0.8
3,145,148	-		DZA65_RS14420	0.70	-0.6
3,145,148	-		DZA65_RS14420	0.70	+1.1
3,145,185	+		DZA65_RS14420	0.78	+0.2
3,145,186	-		DZA65_RS14420	0.78	-1.3
3,145,186	-		DZA65_RS14420	0.78	-2.3
3,145,222	+		DZA65_RS14420	0.85	-0.0
3,145,222	+		DZA65_RS14420	0.85	+1.0
3,145,222	+		DZA65_RS14420	0.85	-0.5
3,145,222	+		DZA65_RS14420	0.85	+0.3
3,145,222	+		DZA65_RS14420	0.85	+0.8
3,145,223	-		DZA65_RS14420	0.85	+0.8
3,145,223	-		DZA65_RS14420	0.85	+0.0
3,145,223	-		DZA65_RS14420	0.85	+0.7
3,145,223	-		DZA65_RS14420	0.85	+0.3
3,145,289	-				-1.7
3,145,289	-				-1.8
3,145,289	-				-2.0
3,145,289	-				-1.8
3,145,289	-				+1.2
3,145,299	+				-0.3
3,145,419	+		DZA65_RS14425	0.10	-2.3
3,145,420	-		DZA65_RS14425	0.10	-0.5
3,145,420	-		DZA65_RS14425	0.10	+1.7
3,145,548	+		DZA65_RS14425	0.21	-0.4
3,145,548	+		DZA65_RS14425	0.21	-0.4
3,145,548	+		DZA65_RS14425	0.21	-0.6
3,145,548	+		DZA65_RS14425	0.21	-1.7
3,145,548	+		DZA65_RS14425	0.21	+1.0
3,145,549	-		DZA65_RS14425	0.21	+0.2
3,145,549	-		DZA65_RS14425	0.21	-0.3
3,145,549	-		DZA65_RS14425	0.21	+0.7
3,145,549	-		DZA65_RS14425	0.21	-0.9
3,145,549	-		DZA65_RS14425	0.21	-0.9
3,145,603	-		DZA65_RS14425	0.25	-0.9
3,145,614	+		DZA65_RS14425	0.26	-0.3
3,145,614	+		DZA65_RS14425	0.26	+2.9
3,145,671	+		DZA65_RS14425	0.31	-0.4
3,145,671	+		DZA65_RS14425	0.31	-0.4
3,145,671	+		DZA65_RS14425	0.31	-1.7
3,145,671	+		DZA65_RS14425	0.31	-1.8
3,145,672	-		DZA65_RS14425	0.31	+1.5
3,145,672	-		DZA65_RS14425	0.31	-0.4
3,145,672	-		DZA65_RS14425	0.31	+0.2
3,145,672	-		DZA65_RS14425	0.31	+0.6
3,145,672	-		DZA65_RS14425	0.31	-0.3
3,145,682	+		DZA65_RS14425	0.31	-0.6
3,145,682	+		DZA65_RS14425	0.31	+0.1
3,145,682	+		DZA65_RS14425	0.31	+1.3
3,145,715	+		DZA65_RS14425	0.34	+1.9
3,145,716	-		DZA65_RS14425	0.34	-1.1
3,145,720	-		DZA65_RS14425	0.35	+0.0
3,145,720	-		DZA65_RS14425	0.35	+0.0
3,145,749	+		DZA65_RS14425	0.37	+1.5
3,145,750	-		DZA65_RS14425	0.37	-1.0
3,145,750	-		DZA65_RS14425	0.37	+0.8
3,145,750	-				-0.3
3,145,750	-		DZA65_RS14425	0.37	+1.1
3,145,750	-		DZA65_RS14425	0.37	-0.5
3,145,750	-		DZA65_RS14425	0.37	-1.5
3,145,776	+		DZA65_RS14425	0.39	+0.0
3,145,779	+		DZA65_RS14425	0.39	-0.1
3,145,872	+		DZA65_RS14425	0.47	+0.9
3,145,937	+		DZA65_RS14425	0.52	+1.1
3,145,937	+		DZA65_RS14425	0.52	-2.0
3,145,937	+		DZA65_RS14425	0.52	+0.8
3,145,937	+		DZA65_RS14425	0.52	+1.3
3,145,937	+		DZA65_RS14425	0.52	-0.2
3,145,937	+		DZA65_RS14425	0.52	+1.5
3,145,937	+		DZA65_RS14425	0.52	+1.3
3,145,937	+		DZA65_RS14425	0.52	-1.0
3,145,937	+		DZA65_RS14425	0.52	+0.3
3,145,937	+		DZA65_RS14425	0.52	-0.0
3,145,937	+		DZA65_RS14425	0.52	+0.9
3,145,938	-		DZA65_RS14425	0.52	-0.1
3,145,938	-		DZA65_RS14425	0.52	+2.7
3,145,938	-		DZA65_RS14425	0.52	-0.3
3,145,938	-		DZA65_RS14425	0.52	-1.0
3,145,938	-		DZA65_RS14425	0.52	+0.1
3,145,939	+		DZA65_RS14425	0.52	+0.7
3,145,939	+		DZA65_RS14425	0.52	+0.2
3,145,939	+		DZA65_RS14425	0.52	+0.3
3,145,939	+		DZA65_RS14425	0.52	+0.3
3,145,940	-		DZA65_RS14425	0.52	-0.1
3,145,940	-		DZA65_RS14425	0.52	+1.4
3,145,940	-		DZA65_RS14425	0.52	-0.2
3,145,957	+		DZA65_RS14425	0.54	-0.7
3,146,035	+		DZA65_RS14425	0.60	-0.4
3,146,035	+		DZA65_RS14425	0.60	-1.4
3,146,050	+				-0.7
3,146,050	+		DZA65_RS14425	0.61	-0.7
3,146,050	+		DZA65_RS14425	0.61	+1.7
3,146,051	-		DZA65_RS14425	0.61	-1.8
3,146,051	-		DZA65_RS14425	0.61	-0.0
3,146,150	+		DZA65_RS14425	0.69	-0.3
3,146,150	+		DZA65_RS14425	0.69	-1.4
3,146,150	+		DZA65_RS14425	0.69	+1.0
3,146,150	+		DZA65_RS14425	0.69	+0.1
3,146,151	-		DZA65_RS14425	0.69	-1.5
3,146,151	-		DZA65_RS14425	0.69	-0.3