Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14195

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,042,181	-				+0.4
3,042,181	-				-0.6
3,042,181	-				-0.5
3,042,181	-				-1.3
3,042,261	-				-1.4
3,042,267	-				+2.0
3,042,267	-				-1.1
3,042,267	-				-0.7
3,042,267	-				-0.5
3,042,288	+				+0.0
3,042,302	+				-0.6
3,042,329	+				-0.3
3,042,329	+				+0.3
3,042,329	+				-0.1
3,042,329	+				+0.1
3,042,330	-				-1.7
3,042,330	-				-1.9
3,042,333	+				+0.1
3,042,333	+				-1.1
3,042,333	+				+1.0
3,042,333	+				-0.7
3,042,333	+				-0.6
3,042,334	-				-1.2
3,042,334	-				+2.1
3,042,334	-				-0.4
3,042,334	-				+1.1
3,042,334	-				+0.6
3,042,334	-				-0.9
3,042,334	-				+2.9
3,042,334	-				-2.0
3,042,334	-				+0.3
3,042,334	-				+0.3
3,042,336	+				-0.3
3,042,337	-				+0.5
3,042,337	-				-0.5
3,042,398	+		DZA65_RS14190	0.16	-1.1
3,042,399	-		DZA65_RS14190	0.16	-1.3
3,042,399	-		DZA65_RS14190	0.16	-2.7
3,042,407	+		DZA65_RS14190	0.17	-2.6
3,042,407	+		DZA65_RS14190	0.17	-0.6
3,042,407	+		DZA65_RS14190	0.17	+1.3
3,042,407	+		DZA65_RS14190	0.17	+0.4
3,042,407	+		DZA65_RS14190	0.17	-0.4
3,042,407	+		DZA65_RS14190	0.17	+1.4
3,042,432	+		DZA65_RS14190	0.20	+0.3
3,042,433	-		DZA65_RS14190	0.20	+0.1
3,042,433	-		DZA65_RS14190	0.20	-0.7
3,042,433	-		DZA65_RS14190	0.20	+0.5
3,042,433	-		DZA65_RS14190	0.20	+0.2
3,042,437	+		DZA65_RS14190	0.21	+0.0
3,042,437	+		DZA65_RS14190	0.21	+0.8
3,042,438	-		DZA65_RS14190	0.21	-0.9
3,042,438	-		DZA65_RS14190	0.21	-1.1
3,042,438	-		DZA65_RS14190	0.21	-0.5
3,042,447	+		DZA65_RS14190	0.22	+0.0
3,042,450	+		DZA65_RS14190	0.22	-0.1
3,042,451	-		DZA65_RS14190	0.22	+0.6
3,042,451	-		DZA65_RS14190	0.22	+1.7
3,042,451	-		DZA65_RS14190	0.22	-1.2
3,042,503	+		DZA65_RS14190	0.29	+0.2
3,042,504	-		DZA65_RS14190	0.29	-2.2
3,042,504	-		DZA65_RS14190	0.29	+0.4
3,042,504	-		DZA65_RS14190	0.29	+0.0
3,042,507	+		DZA65_RS14190	0.29	+0.1
3,042,507	+		DZA65_RS14190	0.29	-1.1
3,042,507	+		DZA65_RS14190	0.29	+0.1
3,042,507	+		DZA65_RS14190	0.29	+1.0
3,042,507	+		DZA65_RS14190	0.29	+1.3
3,042,507	+		DZA65_RS14190	0.29	+1.3
3,042,507	+		DZA65_RS14190	0.29	+0.3
3,042,507	+		DZA65_RS14190	0.29	-0.2
3,042,508	-		DZA65_RS14190	0.29	-2.1
3,042,508	-		DZA65_RS14190	0.29	-0.7
3,042,508	-		DZA65_RS14190	0.29	-0.9
3,042,508	-		DZA65_RS14190	0.29	-1.4
3,042,508	-		DZA65_RS14190	0.29	-0.1
3,042,510	+		DZA65_RS14190	0.29	-0.8
3,042,511	-		DZA65_RS14190	0.30	+0.3
3,042,529	-		DZA65_RS14190	0.32	-0.8
3,042,557	+		DZA65_RS14190	0.35	-0.2
3,042,557	+		DZA65_RS14190	0.35	+0.4
3,042,557	+		DZA65_RS14190	0.35	-0.3
3,042,558	-		DZA65_RS14190	0.35	+0.3
3,042,558	-		DZA65_RS14190	0.35	+0.4
3,042,566	+		DZA65_RS14190	0.36	-0.7
3,042,567	-		DZA65_RS14190	0.36	+1.1
3,042,569	+		DZA65_RS14190	0.37	-1.3
3,042,569	+		DZA65_RS14190	0.37	+0.3
3,042,569	+		DZA65_RS14190	0.37	+0.9
3,042,570	-		DZA65_RS14190	0.37	-0.0
3,042,570	-		DZA65_RS14190	0.37	-0.8
3,042,570	-		DZA65_RS14190	0.37	-0.7
3,042,570	-		DZA65_RS14190	0.37	-0.5
3,042,570	-		DZA65_RS14190	0.37	+0.6
3,042,630	+		DZA65_RS14190	0.44	-0.7
3,042,630	+		DZA65_RS14190	0.44	+0.2
3,042,630	+		DZA65_RS14190	0.44	-0.3
3,042,630	+		DZA65_RS14190	0.44	+0.9
3,042,631	-		DZA65_RS14190	0.44	-1.1
3,042,634	-		DZA65_RS14190	0.44	-0.9
3,042,650	+		DZA65_RS14190	0.46	-0.0
3,042,650	+		DZA65_RS14190	0.46	-0.2
3,042,651	-		DZA65_RS14190	0.46	+0.0
3,042,651	-		DZA65_RS14190	0.46	+0.0
3,042,688	+		DZA65_RS14190	0.51	+1.5
3,042,688	+		DZA65_RS14190	0.51	-0.1
3,042,689	-		DZA65_RS14190	0.51	+2.3
3,042,710	+		DZA65_RS14190	0.54	+0.5
3,042,711	-		DZA65_RS14190	0.54	+0.9
3,042,743	+		DZA65_RS14190	0.58	-0.9
3,042,743	+		DZA65_RS14190	0.58	-2.3
3,042,743	+		DZA65_RS14190	0.58	-0.3
3,042,743	+		DZA65_RS14190	0.58	-1.9
3,042,744	-				+0.3
3,042,812	+		DZA65_RS14190	0.66	+0.0
3,042,813	-		DZA65_RS14190	0.66	-0.9
3,042,813	-		DZA65_RS14190	0.66	-0.5
3,042,813	-		DZA65_RS14190	0.66	-1.7
3,042,813	-		DZA65_RS14190	0.66	-0.6
3,042,816	+		DZA65_RS14190	0.66	+0.1
3,042,816	+		DZA65_RS14190	0.66	+0.9
3,042,816	+		DZA65_RS14190	0.66	-0.9
3,042,817	-		DZA65_RS14190	0.66	+0.9
3,042,817	-		DZA65_RS14190	0.66	-1.0
3,042,841	+		DZA65_RS14190	0.69	+0.8
3,042,842	-		DZA65_RS14190	0.69	+0.4
3,042,864	+		DZA65_RS14190	0.72	+2.4
3,042,864	+		DZA65_RS14190	0.72	-0.3
3,042,875	+		DZA65_RS14190	0.73	-1.7
3,042,875	+		DZA65_RS14190	0.73	+0.6
3,042,876	-		DZA65_RS14190	0.74	-1.7
3,042,881	+		DZA65_RS14190	0.74	-0.7
3,042,881	+		DZA65_RS14190	0.74	-0.3
3,042,881	+		DZA65_RS14190	0.74	-2.2
3,042,881	+		DZA65_RS14190	0.74	+0.0
3,042,881	+		DZA65_RS14190	0.74	-0.1
3,042,895	+		DZA65_RS14190	0.76	+1.0
3,042,916	+		DZA65_RS14190	0.78	-1.0
3,042,945	+		DZA65_RS14190	0.82	-0.3
3,042,945	+		DZA65_RS14190	0.82	-0.1
3,042,946	-		DZA65_RS14190	0.82	-2.3
3,042,946	-		DZA65_RS14190	0.82	-2.7
3,042,946	-		DZA65_RS14190	0.82	+1.3
3,042,950	-		DZA65_RS14190	0.82	+0.7
3,042,950	-		DZA65_RS14190	0.82	+0.7
3,042,950	-		DZA65_RS14190	0.82	-1.0
3,042,950	-		DZA65_RS14190	0.82	+0.6
3,042,950	-		DZA65_RS14190	0.82	-0.2
3,042,984	+		DZA65_RS14190	0.87	+0.5
3,042,993	+		DZA65_RS14190	0.88	-0.2
3,042,993	+		DZA65_RS14190	0.88	+0.0
3,042,993	+		DZA65_RS14190	0.88	+1.0
3,042,994	-		DZA65_RS14190	0.88	-1.5
3,042,994	-		DZA65_RS14190	0.88	-0.4
3,042,999	+		DZA65_RS14190	0.88	+2.1
3,042,999	+		DZA65_RS14190	0.88	-1.7
3,043,000	-		DZA65_RS14190	0.88	-2.3
3,043,000	-		DZA65_RS14190	0.88	-0.8
3,043,003	+		DZA65_RS14190	0.89	-0.4
3,043,003	+		DZA65_RS14190	0.89	+0.0
3,043,004	-		DZA65_RS14190	0.89	+0.0
3,043,004	-		DZA65_RS14190	0.89	-1.3
3,043,023	+				-0.7
3,043,023	+				+2.8
3,043,023	+				+1.0
3,043,087	+				-0.1
3,043,087	+				+0.6
3,043,088	-				-1.3
3,043,088	-				-0.5
3,043,088	-				+0.2
3,043,088	-				-0.3
3,043,095	+				-0.3
3,043,096	-				+2.6
3,043,096	-				-1.3
3,043,099	+				+1.0
3,043,100	-				-3.3
3,043,145	-				-0.3
3,043,146	+				-2.9
3,043,146	+				-1.5
3,043,147	-				+0.1
3,043,147	-				-1.1
3,043,166	+				-0.5
3,043,298	+				-0.7
3,043,298	+				-1.3
3,043,347	+				-0.4
3,043,359	+				+0.6
3,043,359	+				-0.3
3,043,359	+				-2.5
3,043,360	-				+0.1
3,043,363	+				-0.7
3,043,364	-				+1.3
3,043,364	-				-0.4
3,043,364	-				-0.1
3,043,486	+				-0.9
3,043,498	+				+0.1
3,043,498	+				+0.3
3,043,498	+				-0.9
3,043,498	+				+3.3
3,043,499	-				+0.1
3,043,499	-				+0.4
3,043,529	-				-1.1
3,043,594	+				+0.5
3,043,595	-				+0.3
3,043,595	-				+2.3
3,043,596	+				-1.8
3,043,596	+				+2.6
3,043,596	+				-1.5
3,043,597	-				-0.0
3,043,597	-				-0.0
3,043,597	-				+1.0
3,043,597	-				+0.3
3,043,739	-				+2.3
3,043,740	+				+1.3
3,043,740	+				-0.2
3,043,740	+				-1.5
3,043,740	+				+0.2
3,043,740	+				+1.5
3,043,740	+				+0.2
3,043,741	-				-0.1
3,043,741	-				-0.5
3,043,741	-				-0.7
3,043,784	+				-0.3
3,043,784	+				-0.3
3,043,784	+				-1.7
3,043,784	+				+1.6
3,043,784	+				+0.1
3,043,785	-				-1.7
3,043,785	-				-0.0
3,043,785	-				+0.7
3,043,785	-				-0.7
3,043,785	-				-0.7
3,043,785	-				-0.7
3,043,826	-				+0.0
3,043,887	+				+0.6
3,043,887	+				-0.8
3,043,887	+				-1.7
3,043,888	-				-0.2
3,043,888	-				+0.5
3,043,909	+				+1.3
3,043,910	-				+0.2
3,043,922	-				-0.7
3,043,922	-				-0.3
3,043,964	-				+0.3
3,043,985	+				-0.1
3,043,985	+				-0.2
3,043,985	+				-0.0
3,043,985	+				-0.6
3,043,985	+				+0.9
3,043,985	+				-0.0
3,043,986	-				+2.5
3,043,986	-				+0.5
3,043,986	-				-0.3
3,043,986	-				-0.4
3,044,012	+				-1.0
3,044,056	-				+1.0
3,044,056	-				+1.0
3,044,056	-				-0.5
3,044,109	+				-0.9
3,044,147	-				-1.3
3,044,173	+				+1.6
3,044,181	+				+0.2
3,044,181	+				+0.3
3,044,182	-				+0.6
3,044,182	-				+0.0
3,044,217	+				+0.9
3,044,217	+				-0.1
3,044,217	+				-1.9
3,044,217	+				+1.7
3,044,217	+				-0.5
3,044,217	+				-2.3
3,044,218	-				+2.3
3,044,218	-				-0.3
3,044,218	-				-2.7
3,044,317	+				-0.3
3,044,317	+				+0.2
3,044,317	+				+0.3
3,044,317	+				+0.1
3,044,317	+				-0.5
3,044,317	+				-1.5
3,044,317	+				+0.5
3,044,317	+				-1.3
3,044,317	+				+0.3
3,044,317	+				-0.7
3,044,317	+				-0.3
3,044,318	-				-1.5
3,044,318	-				+0.6
3,044,318	-				-1.0
3,044,318	-				-0.5
3,044,318	-				+0.9
3,044,318	-				+0.7
3,044,318	-				+1.9
3,044,319	+				-0.5
3,044,319	+				-1.4
3,044,319	+				+1.1
3,044,319	+				-0.6
3,044,319	+				+0.3
3,044,319	+				+0.5
3,044,319	+				-0.3
3,044,319	+				-2.0
3,044,319	+				-0.1
3,044,320	-				+0.7
3,044,320	-				+1.0
3,044,320	-				+2.5
3,044,320	-				+0.3
3,044,320	-				+0.6
3,044,320	-				-1.0
3,044,348	+				+0.6
3,044,348	+				+0.7
3,044,349	-				-0.0
3,044,351	+				-0.7
3,044,352	-				-0.8
3,044,432	-				-0.4
3,044,473	+				+0.6
3,044,473	+				+0.6
3,044,473	+				-0.2
3,044,473	+				+0.7
3,044,473	+				+0.6
3,044,474	-				-0.0
3,044,474	-				+0.8
3,044,474	-				-0.8
3,044,474	-				+2.1
3,044,474	-				-0.4
3,044,474	-				+0.3
3,044,478	-				-1.3
3,044,497	+				-1.7
3,044,498	-				+0.0
3,044,500	+				+0.6
3,044,501	-				+0.6
3,044,506	+				+0.7
3,044,506	+				-0.7
3,044,506	+				+0.6
3,044,507	-				-0.5
3,044,539	+				+0.6
3,044,539	+				-2.7
3,044,540	-				+1.0
3,044,540	-				-1.0
3,044,540	-				+0.9
3,044,540	-				-0.2
3,044,540	-				+0.3
3,044,540	-				+0.0
3,044,568	+				-0.2
3,044,568	+				+0.1
3,044,569	-				-1.7
3,044,597	+				-0.5
3,044,598	-				+2.3
3,044,656	-				-0.8
3,044,708	+				+1.2
3,044,708	+				-0.4
3,044,720	+				-1.0
3,044,720	+				-1.3
3,044,720	+				-0.5
3,044,720	+				-0.7
3,044,720	+				-0.4
3,044,721	-				-0.8
3,044,721	-				-2.0
3,044,721	-				+0.1
3,044,794	+				+0.0
3,044,795	-				+0.1
3,044,993	+		DZA65_RS14195	0.11	+1.8
3,045,027	+		DZA65_RS14195	0.11	-0.9
3,045,027	+		DZA65_RS14195	0.11	-1.5
3,045,028	-		DZA65_RS14195	0.11	-1.6
3,045,091	+		DZA65_RS14195	0.11	+0.0
3,045,091	+		DZA65_RS14195	0.11	-0.9
3,045,091	+		DZA65_RS14195	0.11	-1.1
3,045,091	+		DZA65_RS14195	0.11	-1.1
3,045,091	+		DZA65_RS14195	0.11	+0.8
3,045,091	+		DZA65_RS14195	0.11	-0.0
3,045,092	-		DZA65_RS14195	0.11	+1.0
3,045,092	-		DZA65_RS14195	0.11	+0.0
3,045,092	-		DZA65_RS14195	0.11	+0.7
3,045,092	-		DZA65_RS14195	0.11	-0.5
3,045,092	-		DZA65_RS14195	0.11	-0.9
3,045,110	+		DZA65_RS14195	0.12	-0.3
3,045,110	+		DZA65_RS14195	0.12	+1.0
3,045,123	-		DZA65_RS14195	0.12	-1.1
3,045,134	+		DZA65_RS14195	0.12	-0.5
3,045,134	+		DZA65_RS14195	0.12	-0.6
3,045,134	+		DZA65_RS14195	0.12	-1.2
3,045,134	+		DZA65_RS14195	0.12	+3.1
3,045,134	+		DZA65_RS14195	0.12	-0.6
3,045,134	+		DZA65_RS14195	0.12	+1.0
3,045,134	+		DZA65_RS14195	0.12	+0.3
3,045,134	+				+0.3
3,045,135	-		DZA65_RS14195	0.12	+0.6
3,045,135	-		DZA65_RS14195	0.12	-1.0
3,045,135	-		DZA65_RS14195	0.12	+0.9
3,045,135	-		DZA65_RS14195	0.12	-1.3
3,045,135	-		DZA65_RS14195	0.12	+0.3
3,045,135	-		DZA65_RS14195	0.12	+0.1
3,045,135	-		DZA65_RS14195	0.12	-0.7
3,045,135	-		DZA65_RS14195	0.12	+1.2
3,045,135	-		DZA65_RS14195	0.12	+0.7
3,045,194	+		DZA65_RS14195	0.12	-2.0
3,045,194	+		DZA65_RS14195	0.12	-0.1
3,045,195	-		DZA65_RS14195	0.12	+2.3
3,045,294	+		DZA65_RS14195	0.13	+0.8
3,045,294	+		DZA65_RS14195	0.13	+0.7
3,045,294	+		DZA65_RS14195	0.13	+0.3
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3,046,318	+		DZA65_RS14195	0.19	+1.1
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3,046,838	+		DZA65_RS14195	0.22	+1.1
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3,046,838	+		DZA65_RS14195	0.22	-1.1
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3,047,806	-		DZA65_RS14195	0.28	-2.7
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3,049,319	-		DZA65_RS14195	0.37	+0.5
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3,049,557	+		DZA65_RS14195	0.38	+0.1
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3,052,275	-		DZA65_RS14195	0.54	+0.0
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3,052,278	+		DZA65_RS14195	0.54	-0.2
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3,052,304	+		DZA65_RS14195	0.55	-1.1
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3,052,367	-		DZA65_RS14195	0.55	+0.0
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3,052,968	-		DZA65_RS14195	0.59	-1.1
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3,055,883	-		DZA65_RS14195	0.76	-0.1
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3,055,885	-		DZA65_RS14195	0.76	-1.0
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3,056,110	-		DZA65_RS14195	0.77	+1.0
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3,056,756	+		DZA65_RS14195	0.81	+1.3
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