Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13095

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,808,292	+		DZA65_RS13085	0.55	-2.3
2,808,292	+		DZA65_RS13085	0.55	-0.4
2,808,322	+		DZA65_RS13085	0.59	-1.0
2,808,340	+		DZA65_RS13085	0.62	-0.8
2,808,341	-		DZA65_RS13085	0.62	-0.8
2,808,342	+		DZA65_RS13085	0.62	-2.3
2,808,342	+		DZA65_RS13085	0.62	-2.5
2,808,343	-		DZA65_RS13085	0.62	-0.4
2,808,343	-		DZA65_RS13085	0.62	-0.1
2,808,343	-		DZA65_RS13085	0.62	+0.2
2,808,536	-				-0.7
2,808,536	-				-2.6
2,808,538	-				-1.8
2,808,538	-				-1.2
2,808,632	-				-1.0
2,808,782	-				-1.6
2,808,782	-				-0.6
2,808,859	+		DZA65_RS13090	0.24	+0.2
2,808,859	+		DZA65_RS13090	0.24	+0.5
2,808,959	+		DZA65_RS13090	0.55	-1.0
2,808,959	+		DZA65_RS13090	0.55	-0.4
2,808,960	-		DZA65_RS13090	0.56	-0.2
2,809,000	+		DZA65_RS13090	0.68	+0.6
2,809,001	-		DZA65_RS13090	0.68	+2.4
2,809,003	+		DZA65_RS13090	0.69	-0.8
2,809,003	+		DZA65_RS13090	0.69	-0.3
2,809,003	+		DZA65_RS13090	0.69	-0.5
2,809,003	+		DZA65_RS13090	0.69	+1.6
2,809,004	-		DZA65_RS13090	0.69	-1.3
2,809,004	-		DZA65_RS13090	0.69	-1.2
2,809,004	-		DZA65_RS13090	0.69	+1.3
2,809,004	-		DZA65_RS13090	0.69	+0.2
2,809,004	-		DZA65_RS13090	0.69	-0.3
2,809,004	-		DZA65_RS13090	0.69	-0.3
2,809,065	+		DZA65_RS13090	0.88	-0.2
2,809,065	+		DZA65_RS13090	0.88	-0.1
2,809,065	+		DZA65_RS13090	0.88	-0.3
2,809,065	+		DZA65_RS13090	0.88	-0.8
2,809,065	+		DZA65_RS13090	0.88	+0.6
2,809,065	+		DZA65_RS13090	0.88	-1.1
2,809,065	+		DZA65_RS13090	0.88	-1.0
2,809,066	-		DZA65_RS13090	0.88	+1.5
2,809,066	-		DZA65_RS13090	0.88	-0.2
2,809,066	-		DZA65_RS13090	0.88	-0.8
2,809,066	-		DZA65_RS13090	0.88	-0.8
2,809,066	-		DZA65_RS13090	0.88	-0.4
2,809,066	-		DZA65_RS13090	0.88	-0.2
2,809,066	-		DZA65_RS13090	0.88	+0.2
2,809,066	-		DZA65_RS13090	0.88	-2.1
2,809,066	-		DZA65_RS13090	0.88	+0.7
2,809,106	+				+0.1
2,809,106	+				-0.3
2,809,106	+				-0.8
2,809,106	+				+0.6
2,809,106	+				-0.4
2,809,106	+				-2.8
2,809,106	+				-0.5
2,809,106	+				-0.2
2,809,107	-				-0.0
2,809,107	-				+0.5
2,809,107	-				+0.7
2,809,107	-				-0.4
2,809,107	-				-1.3
2,809,107	-				-0.1
2,809,107	-				-1.2
2,809,120	+				+1.1
2,809,171	+				-1.1
2,809,171	+				+0.8
2,809,172	-				+0.4
2,809,211	+				+0.2
2,809,229	+				+1.7
2,809,230	-				-0.8
2,809,230	-				-0.7
2,809,518	+		DZA65_RS13095	0.28	-0.3
2,809,518	+		DZA65_RS13095	0.28	-0.0
2,809,518	+		DZA65_RS13095	0.28	-1.0
2,809,518	+		DZA65_RS13095	0.28	+0.6
2,809,519	-		DZA65_RS13095	0.28	+0.8
2,809,519	-		DZA65_RS13095	0.28	+0.2
2,809,519	-		DZA65_RS13095	0.28	-0.2
2,809,519	-		DZA65_RS13095	0.28	-0.3
2,809,589	+		DZA65_RS13095	0.34	+0.8
2,809,629	-		DZA65_RS13095	0.38	-1.6
2,809,703	+		DZA65_RS13095	0.44	-2.3
2,809,704	-		DZA65_RS13095	0.44	+0.0
2,809,704	-		DZA65_RS13095	0.44	-1.3
2,809,704	-		DZA65_RS13095	0.44	-0.2
2,809,704	-		DZA65_RS13095	0.44	-0.9
2,809,704	-		DZA65_RS13095	0.44	+0.2
2,809,746	+		DZA65_RS13095	0.48	-1.1
2,809,746	+		DZA65_RS13095	0.48	+1.2
2,809,746	+		DZA65_RS13095	0.48	+1.0
2,809,746	+		DZA65_RS13095	0.48	-0.2
2,809,746	+		DZA65_RS13095	0.48	-0.3
2,809,747	-		DZA65_RS13095	0.48	+0.8
2,809,747	-		DZA65_RS13095	0.48	+0.4
2,809,747	-		DZA65_RS13095	0.48	-0.4
2,809,747	-		DZA65_RS13095	0.48	-1.1
2,809,766	+		DZA65_RS13095	0.50	+0.2
2,809,767	-		DZA65_RS13095	0.50	-0.3
2,809,767	-		DZA65_RS13095	0.50	-0.5
2,809,767	-		DZA65_RS13095	0.50	-0.8
2,809,774	+		DZA65_RS13095	0.51	-1.3
2,809,962	+		DZA65_RS13095	0.68	+0.2
2,809,989	+		DZA65_RS13095	0.70	+0.1
2,809,989	+		DZA65_RS13095	0.70	-1.2
2,810,049	+		DZA65_RS13095	0.75	-0.9
2,810,092	+		DZA65_RS13095	0.79	+0.2
2,810,093	-		DZA65_RS13095	0.79	-0.0
2,810,180	-		DZA65_RS13095	0.87	-0.1
2,810,216	+				-0.4
2,810,217	-				-0.5
2,810,217	-				-1.3
2,810,217	-				+0.1
2,810,217	-				-0.2
2,810,217	-				+1.1
2,810,251	-				+0.2
2,810,251	-				-0.5
2,810,304	+				+0.2
2,810,304	+				-1.6
2,810,304	+				+0.2
2,810,304	+				-0.0
2,810,304	+				-0.2
2,810,304	+				+0.8
2,810,304	+				-0.7
2,810,304	+				-0.1
2,810,304	+				-1.1
2,810,304	+				+0.4
2,810,304	+				+1.1
2,810,304	+				+0.2
2,810,304	+				-0.8
2,810,304	+				-1.0
2,810,304	+				-0.8
2,810,304	+				-1.0
2,810,305	-				+2.1
2,810,305	-				-0.2
2,810,305	-				-0.7
2,810,305	-				+0.4
2,810,305	-				+2.4
2,810,305	-				+1.8
2,810,305	-				-0.8
2,810,305	-				+1.6
2,810,305	-				+0.2
2,810,305	-				-0.4
2,810,306	+				+0.4
2,810,306	+				+1.0
2,810,306	+				+1.0
2,810,306	+				-0.0
2,810,307	-				+1.8
2,810,307	-				-1.1
2,810,307	-				-1.9
2,810,307	-				-0.5
2,810,307	-				+0.5
2,810,307	-				-0.2
2,810,307	-				+0.4
2,810,328	+				-0.6
2,810,341	+				-0.9
2,810,364	+				+0.2
2,810,364	+				+0.4
2,810,364	+				-1.1
2,810,365	-				+1.1
2,810,365	-				+2.4
2,810,365	-				-0.2
2,810,365	-				-1.5
2,810,365	-				+0.8
2,810,365	-				-0.6
2,810,365	-				-0.1
2,810,414	-				+1.2
2,810,414	-				+1.2
2,810,508	+				+0.7
2,810,510	+				+1.2
2,810,511	-				+1.5
2,810,520	-				-0.8
2,810,522	+				+0.2
2,810,544	+				+0.9
2,810,544	+				-0.3
2,810,550	+				-0.6
2,810,550	+				+0.3
2,810,551	-				-0.5
2,810,551	-				-2.9
2,810,568	+				-1.8
2,810,569	-				+0.7
2,810,604	+				-1.0
2,810,604	+				+0.2
2,810,604	+				-0.1
2,810,604	+				-0.8
2,810,605	-				-0.5
2,810,608	+				-0.0
2,810,608	+				+0.2
2,810,608	+				+0.3
2,810,608	+				+0.2
2,810,621	+				+0.8
2,810,649	+				+1.1
2,810,649	+				-3.2
2,810,649	+				-0.4
2,810,649	+				-1.5
2,810,649	+				-2.6
2,810,649	+				-0.2
2,810,649	+				-0.6
2,810,649	+				+0.2
2,810,650	-				-1.0
2,810,650	-				-0.8
2,810,650	-				-0.8
2,810,651	+				-0.6
2,810,652	-				-2.1
2,810,768	+		DZA65_RS13100	0.22	-2.1
2,810,769	-		DZA65_RS13100	0.22	-1.6
2,810,769	-		DZA65_RS13100	0.22	-0.5
2,811,132	+				-0.3
2,811,143	+				-1.8
2,811,143	+				+2.1
2,811,143	+				+1.2
2,811,144	-				-2.1
2,811,175	+				-1.3
2,811,176	-				-0.1
2,811,176	-				-0.0
2,811,176	-				-0.6
2,811,176	-				+0.7
2,811,198	-				-0.6
2,811,199	+				+3.9
2,811,199	+				+0.4
2,811,200	-				+0.4
2,811,200	-				-0.0
2,811,200	-				-0.3
2,811,207	+				+0.9
2,811,208	-				-0.0
2,811,232	+				-0.1
2,811,233	-				+0.6
2,811,234	+				-0.8
2,811,234	+				+1.2
2,811,235	-				-2.8
2,811,273	-				-1.1
2,811,278	-				-1.2
2,811,295	+				+0.2
2,811,295	+				-0.8
2,811,296	-				+1.2