Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13010

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,789,767	+		DZA65_RS13005	0.59	+0.7
2,789,768	-		DZA65_RS13005	0.59	+0.8
2,789,909	+		DZA65_RS13005	0.65	-0.6
2,789,909	+		DZA65_RS13005	0.65	+1.0
2,789,909	+		DZA65_RS13005	0.65	-0.0
2,789,910	-		DZA65_RS13005	0.65	-0.6
2,789,910	-		DZA65_RS13005	0.65	-0.4
2,789,910	-		DZA65_RS13005	0.65	-1.0
2,789,955	+		DZA65_RS13005	0.68	-0.8
2,790,044	-		DZA65_RS13005	0.72	+0.0
2,790,142	-		DZA65_RS13005	0.77	-0.8
2,790,254	+		DZA65_RS13005	0.82	+0.2
2,790,255	-		DZA65_RS13005	0.82	+1.5
2,790,273	+		DZA65_RS13005	0.83	-0.2
2,790,273	+		DZA65_RS13005	0.83	-1.2
2,790,289	+		DZA65_RS13005	0.84	+0.3
2,790,476	+				-3.2
2,790,649	+				-0.6
2,790,649	+				-1.5
2,790,651	+				-0.7
2,790,651	+				-1.8
2,790,651	+				+1.0
2,790,651	+				+1.1
2,790,651	+				-0.0
2,790,651	+				+0.7
2,790,651	+				-0.3
2,790,651	+				-0.3
2,790,651	+				+0.0
2,790,652	-				+0.2
2,790,652	-				+0.2
2,790,652	-				+1.0
2,790,652	-				+0.2
2,790,652	-				-1.1
2,790,652	-				+0.4
2,790,652	-				+0.9
2,790,731	+				+0.1
2,790,732	-				+0.0
2,790,732	-				-0.2
2,790,732	-				+0.2
2,790,751	+				-0.3
2,790,752	-				-0.7
2,790,752	-				+2.2
2,790,976	+		DZA65_RS13010	0.25	-0.1
2,791,022	-		DZA65_RS13010	0.30	-0.5
2,791,049	+		DZA65_RS13010	0.32	+0.7
2,791,049	+		DZA65_RS13010	0.32	+0.3
2,791,049	+		DZA65_RS13010	0.32	-0.6
2,791,049	+		DZA65_RS13010	0.32	+0.2
2,791,049	+		DZA65_RS13010	0.32	+0.6
2,791,049	+		DZA65_RS13010	0.32	-0.1
2,791,049	+		DZA65_RS13010	0.32	+1.5
2,791,049	+		DZA65_RS13010	0.32	+0.2
2,791,050	-		DZA65_RS13010	0.32	+0.7
2,791,050	-		DZA65_RS13010	0.32	+1.5
2,791,050	-		DZA65_RS13010	0.32	+0.2
2,791,050	-		DZA65_RS13010	0.32	-0.4
2,791,050	-		DZA65_RS13010	0.32	+0.2
2,791,050	-		DZA65_RS13010	0.32	+0.0
2,791,050	-		DZA65_RS13010	0.32	-1.2
2,791,050	-		DZA65_RS13010	0.32	+0.2
2,791,050	-		DZA65_RS13010	0.32	+1.0
2,791,050	-		DZA65_RS13010	0.32	-0.2
2,791,050	-		DZA65_RS13010	0.32	+0.4
2,791,099	+		DZA65_RS13010	0.37	-0.5
2,791,099	+		DZA65_RS13010	0.37	-0.7
2,791,100	-		DZA65_RS13010	0.37	-1.8
2,791,187	+		DZA65_RS13010	0.46	-2.2
2,791,188	-		DZA65_RS13010	0.46	+0.0
2,791,226	+		DZA65_RS13010	0.50	+0.2
2,791,226	+		DZA65_RS13010	0.50	-0.0
2,791,226	+		DZA65_RS13010	0.50	+0.6
2,791,226	+		DZA65_RS13010	0.50	-0.8
2,791,226	+		DZA65_RS13010	0.50	+1.3
2,791,226	+		DZA65_RS13010	0.50	+1.8
2,791,226	+		DZA65_RS13010	0.50	-1.0
2,791,227	-		DZA65_RS13010	0.50	-0.1
2,791,227	-		DZA65_RS13010	0.50	+0.2
2,791,227	-		DZA65_RS13010	0.50	-1.1
2,791,227	-		DZA65_RS13010	0.50	-0.1
2,791,227	-		DZA65_RS13010	0.50	+1.2
2,791,227	-		DZA65_RS13010	0.50	-1.1
2,791,227	-		DZA65_RS13010	0.50	-1.6
2,791,227	-		DZA65_RS13010	0.50	+1.1
2,791,227	-		DZA65_RS13010	0.50	+0.5
2,791,227	-		DZA65_RS13010	0.50	+0.2
2,791,339	-		DZA65_RS13010	0.61	-0.8
2,791,359	+		DZA65_RS13010	0.63	+0.5
2,791,359	+		DZA65_RS13010	0.63	+0.2
2,791,359	+		DZA65_RS13010	0.63	-0.2
2,791,359	+		DZA65_RS13010	0.63	+1.4
2,791,360	-		DZA65_RS13010	0.63	+2.0
2,791,360	-		DZA65_RS13010	0.63	-0.8
2,791,360	-		DZA65_RS13010	0.63	-0.5
2,791,453	+		DZA65_RS13010	0.72	+0.2
2,791,454	-		DZA65_RS13010	0.72	+0.8
2,791,519	+		DZA65_RS13010	0.79	-0.4
2,791,519	+		DZA65_RS13010	0.79	-0.9
2,791,520	-		DZA65_RS13010	0.79	+0.2
2,791,564	+		DZA65_RS13010	0.83	-0.4
2,791,565	-		DZA65_RS13010	0.83	-0.5
2,791,632	+		DZA65_RS13010	0.90	+0.5
2,791,632	+		DZA65_RS13010	0.90	-1.0
2,791,633	-		DZA65_RS13010	0.90	+0.0
2,791,633	-		DZA65_RS13010	0.90	-1.6
2,791,633	-		DZA65_RS13010	0.90	-0.3
2,791,657	+				-0.1
2,791,658	-				+0.2
2,791,718	-				+0.8
2,791,718	-				-0.5
2,791,729	+				+0.4
2,791,730	-				-2.6
2,791,730	-				+0.1
2,791,730	-				-0.4
2,791,730	-				-0.1
2,791,735	+				-0.8
2,791,735	+				+0.4
2,791,735	+				-0.2
2,791,735	+				+0.4
2,791,736	-				-0.3
2,791,736	-				+1.0
2,791,736	-				+0.5
2,791,736	-				+0.4
2,791,736	-				+1.0
2,791,736	-				-0.2
2,791,767	+				-1.1
2,791,767	+				+0.5
2,791,768	-				+1.1
2,791,768	-				+1.0
2,791,768	-				-0.2
2,791,768	-				+0.4
2,791,776	+				+0.6
2,791,776	+				+0.2
2,791,776	+				-1.9
2,791,777	-				+0.7
2,791,920	-				-0.2
2,791,940	+				+0.2
2,791,941	-				-1.3
2,792,046	+				-0.9
2,792,047	-				-0.4
2,792,047	-				-1.8
2,792,133	+				+0.6
2,792,136	+				+0.5
2,792,136	+				+1.2
2,792,137	-				+1.2
2,792,137	-				-0.7
2,792,137	-				-0.0
2,792,137	-				+0.2
2,792,137	-				+0.2
2,792,147	-				-1.0
2,792,163	+				-3.3
2,792,163	+				-0.4
2,792,163	+				-0.7
2,792,227	+		DZA65_RS13015	0.15	+1.0
2,792,235	+		DZA65_RS13015	0.16	-1.0
2,792,235	+		DZA65_RS13015	0.16	+0.5
2,792,235	+		DZA65_RS13015	0.16	-0.9
2,792,236	-		DZA65_RS13015	0.16	+0.2
2,792,236	-		DZA65_RS13015	0.16	-0.6
2,792,236	-		DZA65_RS13015	0.16	-0.8
2,792,263	+		DZA65_RS13015	0.20	-0.6
2,792,263	+		DZA65_RS13015	0.20	-0.0
2,792,369	+		DZA65_RS13015	0.35	-2.3
2,792,370	-		DZA65_RS13015	0.35	+0.3
2,792,370	-		DZA65_RS13015	0.35	+0.2
2,792,452	-		DZA65_RS13015	0.47	-0.9
2,792,568	+		DZA65_RS13015	0.64	-0.5
2,792,568	+		DZA65_RS13015	0.64	+1.0
2,792,568	+		DZA65_RS13015	0.64	+0.1
2,792,569	-		DZA65_RS13015	0.64	-0.6
2,792,569	-		DZA65_RS13015	0.64	+0.8
2,792,569	-		DZA65_RS13015	0.64	-3.0
2,792,569	-		DZA65_RS13015	0.64	-0.5
2,792,569	-		DZA65_RS13015	0.64	-0.9
2,792,569	-		DZA65_RS13015	0.64	-0.3
2,792,676	+		DZA65_RS13015	0.79	-2.8
2,792,676	+		DZA65_RS13015	0.79	-0.8
2,792,677	-		DZA65_RS13015	0.80	-0.7
2,792,695	+		DZA65_RS13015	0.82	-2.1
2,792,695	+		DZA65_RS13015	0.82	+1.0