Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12830

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,748,859	+		DZA65_RS12820	0.84	+0.1
2,748,859	+		DZA65_RS12820	0.84	-0.1
2,748,859	+		DZA65_RS12820	0.84	-0.7
2,748,859	+		DZA65_RS12820	0.84	-1.6
2,748,860	-		DZA65_RS12820	0.84	+0.2
2,748,860	-		DZA65_RS12820	0.84	-2.1
2,748,860	-		DZA65_RS12820	0.84	-1.1
2,749,010	-				+0.9
2,749,071	+				-0.8
2,749,071	+				-0.2
2,749,071	+				-1.0
2,749,071	+				-1.2
2,749,072	-				-0.4
2,749,106	+				-0.1
2,749,107	-				-0.0
2,749,339	+		DZA65_RS12825	0.46	-1.5
2,749,339	+		DZA65_RS12825	0.46	-0.6
2,749,340	-		DZA65_RS12825	0.46	+1.7
2,749,346	-		DZA65_RS12825	0.48	+0.1
2,749,346	-		DZA65_RS12825	0.48	-1.2
2,749,346	-		DZA65_RS12825	0.48	-1.6
2,749,346	-		DZA65_RS12825	0.48	+0.0
2,749,483	+				+1.1
2,749,483	+				-1.0
2,749,483	+				-0.9
2,749,483	+				+0.2
2,749,483	+				-0.1
2,749,484	-				-0.3
2,749,564	+				+0.6
2,749,565	-				-0.3
2,749,565	-				+0.2
2,749,565	-				+0.2
2,749,565	-				-0.7
2,749,570	+				+0.1
2,749,570	+				-0.1
2,749,570	+				+0.4
2,749,570	+				-1.2
2,749,571	-				-0.4
2,749,571	-				+0.4
2,749,574	+				-0.2
2,749,575	-				-1.8
2,749,575	-				+0.6
2,749,575	-				-1.1
2,749,579	+				+0.9
2,749,579	+				-1.4
2,749,580	-				+1.5
2,749,601	-				+0.2
2,749,613	+				+0.1
2,749,665	+				+0.4
2,749,665	+				-0.1
2,749,675	-				-2.6
2,749,675	-				-0.1
2,749,706	+				+0.1
2,749,707	-				+1.5
2,749,707	-				+0.8
2,749,708	+				+0.2
2,749,730	+				+1.3
2,749,770	+				-0.6
2,749,770	+				+1.6
2,749,778	+				-0.3
2,749,778	+				+0.2
2,749,778	+				-1.8
2,749,778	+				-1.5
2,749,778	+				-1.0
2,749,778	+				+0.2
2,749,778	+				+0.7
2,749,778	+				+0.8
2,749,779	-				-0.4
2,749,779	-				+0.2
2,749,779	-				+0.4
2,749,835	-				+0.4
2,749,835	-				-0.0
2,750,114	+		DZA65_RS12830	0.33	-1.0
2,750,114	+		DZA65_RS12830	0.33	-0.5
2,750,115	-		DZA65_RS12830	0.33	-0.8
2,750,115	-		DZA65_RS12830	0.33	-0.4
2,750,115	-		DZA65_RS12830	0.33	+0.2
2,750,115	-		DZA65_RS12830	0.33	-1.6
2,750,115	-		DZA65_RS12830	0.33	-2.1
2,750,115	-		DZA65_RS12830	0.33	-0.1
2,750,188	+		DZA65_RS12830	0.40	-1.4
2,750,189	-		DZA65_RS12830	0.40	-1.0
2,750,428	+		DZA65_RS12830	0.62	-0.1
2,750,464	+		DZA65_RS12830	0.66	-0.1
2,750,464	+		DZA65_RS12830	0.66	+0.1
2,750,464	+		DZA65_RS12830	0.66	-1.6
2,750,464	+		DZA65_RS12830	0.66	+0.3
2,750,464	+				+1.2
2,750,465	-		DZA65_RS12830	0.66	-0.6
2,750,465	-		DZA65_RS12830	0.66	-1.8
2,750,465	-		DZA65_RS12830	0.66	+0.7
2,750,465	-		DZA65_RS12830	0.66	+0.4
2,750,658	+		DZA65_RS12830	0.84	+0.2
2,750,658	+		DZA65_RS12830	0.84	-0.1
2,750,659	-		DZA65_RS12830	0.84	+1.8
2,750,846	-				+0.5
2,750,917	+				-2.1
2,750,997	+		DZA65_RS12835	0.11	-2.1
2,750,997	+		DZA65_RS12835	0.11	-1.8
2,750,998	-		DZA65_RS12835	0.11	-0.5
2,750,998	-		DZA65_RS12835	0.11	-0.8
2,750,998	-		DZA65_RS12835	0.11	-0.4
2,750,998	-		DZA65_RS12835	0.11	+0.4
2,750,998	-		DZA65_RS12835	0.11	-1.1
2,751,000	+		DZA65_RS12835	0.12	-0.8
2,751,000	+		DZA65_RS12835	0.12	-0.4
2,751,000	+				-0.1
2,751,051	+		DZA65_RS12835	0.22	+0.1
2,751,051	+		DZA65_RS12835	0.22	+1.1
2,751,052	-		DZA65_RS12835	0.22	+1.6
2,751,052	-		DZA65_RS12835	0.22	+0.2
2,751,052	-		DZA65_RS12835	0.22	+1.2
2,751,052	-		DZA65_RS12835	0.22	+0.2
2,751,097	-		DZA65_RS12835	0.31	-0.5
2,751,097	-		DZA65_RS12835	0.31	+0.1
2,751,137	+		DZA65_RS12835	0.39	+0.7
2,751,138	-		DZA65_RS12835	0.40	-1.0
2,751,155	+		DZA65_RS12835	0.43	-0.9
2,751,155	+		DZA65_RS12835	0.43	+0.0
2,751,155	+		DZA65_RS12835	0.43	-0.3
2,751,155	+		DZA65_RS12835	0.43	+0.7
2,751,156	-		DZA65_RS12835	0.43	+2.6
2,751,156	-		DZA65_RS12835	0.43	-0.4
2,751,156	-		DZA65_RS12835	0.43	-1.4
2,751,156	-		DZA65_RS12835	0.43	-0.4
2,751,156	-		DZA65_RS12835	0.43	-0.3
2,751,159	+		DZA65_RS12835	0.44	+1.5
2,751,159	+		DZA65_RS12835	0.44	+0.1
2,751,159	+		DZA65_RS12835	0.44	+0.1
2,751,160	-		DZA65_RS12835	0.44	+0.3
2,751,160	-		DZA65_RS12835	0.44	-1.3
2,751,160	-		DZA65_RS12835	0.44	+1.6
2,751,160	-		DZA65_RS12835	0.44	-0.4
2,751,160	-		DZA65_RS12835	0.44	+1.0
2,751,160	-		DZA65_RS12835	0.44	+0.5
2,751,198	+		DZA65_RS12835	0.52	+0.2
2,751,198	+		DZA65_RS12835	0.52	-1.9
2,751,227	+		DZA65_RS12835	0.57	+0.2
2,751,227	+		DZA65_RS12835	0.57	-1.1
2,751,227	+		DZA65_RS12835	0.57	-0.1
2,751,227	+		DZA65_RS12835	0.57	+2.1
2,751,227	+		DZA65_RS12835	0.57	-0.2
2,751,227	+		DZA65_RS12835	0.57	+0.8
2,751,227	+		DZA65_RS12835	0.57	-1.8
2,751,227	+		DZA65_RS12835	0.57	+0.7
2,751,227	+		DZA65_RS12835	0.57	-0.8
2,751,227	+		DZA65_RS12835	0.57	-0.1
2,751,227	+		DZA65_RS12835	0.57	+0.2
2,751,227	+		DZA65_RS12835	0.57	+1.0
2,751,227	+		DZA65_RS12835	0.57	-0.6
2,751,227	+		DZA65_RS12835	0.57	+1.4
2,751,227	+		DZA65_RS12835	0.57	-0.6
2,751,227	+		DZA65_RS12835	0.57	+0.2
2,751,227	+		DZA65_RS12835	0.57	+1.5
2,751,228	-		DZA65_RS12835	0.58	-0.4
2,751,228	-		DZA65_RS12835	0.58	-0.8
2,751,228	-		DZA65_RS12835	0.58	-0.4
2,751,228	-		DZA65_RS12835	0.58	-0.4
2,751,228	-		DZA65_RS12835	0.58	+0.2
2,751,228	-		DZA65_RS12835	0.58	-0.2
2,751,228	-		DZA65_RS12835	0.58	-0.1
2,751,228	-		DZA65_RS12835	0.58	-1.1
2,751,228	-		DZA65_RS12835	0.58	+0.5
2,751,228	-		DZA65_RS12835	0.58	-0.5
2,751,273	-		DZA65_RS12835	0.67	+0.2
2,751,273	-		DZA65_RS12835	0.67	+1.1
2,751,294	+		DZA65_RS12835	0.71	+1.8
2,751,295	-		DZA65_RS12835	0.71	-0.1
2,751,332	+		DZA65_RS12835	0.79	+0.2
2,751,332	+		DZA65_RS12835	0.79	+0.7
2,751,333	-		DZA65_RS12835	0.79	-0.4
2,751,335	+		DZA65_RS12835	0.79	+1.2
2,751,336	-		DZA65_RS12835	0.79	+1.6
2,751,351	+		DZA65_RS12835	0.82	-1.2
2,751,351	+		DZA65_RS12835	0.82	-0.6
2,751,351	+		DZA65_RS12835	0.82	+1.1
2,751,352	-		DZA65_RS12835	0.83	-1.8
2,751,352	-		DZA65_RS12835	0.83	-0.5
2,751,352	-		DZA65_RS12835	0.83	-0.5
2,751,352	-		DZA65_RS12835	0.83	+1.8
2,751,352	-		DZA65_RS12835	0.83	-0.1
2,751,352	-		DZA65_RS12835	0.83	-0.5
2,751,443	-				-0.6
2,751,551	+				-1.4
2,751,552	-				+0.4
2,751,552	-				-0.0
2,751,552	-				-1.0
2,751,601	+				-0.3
2,751,605	+				+0.4
2,751,605	+				+0.4
2,751,682	+				-0.1
2,751,683	-				+2.1
2,751,707	+				-1.5
2,751,707	+				+1.5
2,751,707	+				+0.7
2,751,708	-				+0.9
2,751,708	-				-1.4
2,751,708	-				-0.8
2,751,708	-				+0.6
2,751,709	+				+1.8
2,751,710	-				-0.6
2,751,710	-				+2.7
2,751,760	+				-1.8
2,751,763	+				+2.5