Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12790

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,736,179	-				+0.7
2,736,248	+				+0.0
2,736,249	-				-0.3
2,736,249	-				+0.1
2,736,260	+				-1.0
2,736,260	+				-2.5
2,736,260	+				+0.1
2,736,261	-				-0.2
2,736,261	-				+0.2
2,736,297	-				+0.6
2,736,297	-				-0.9
2,736,299	+				-0.3
2,736,299	+				+1.5
2,736,307	+				+1.4
2,736,307	+				+0.9
2,736,307	+				-1.2
2,736,307	+				-0.5
2,736,307	+				+0.6
2,736,308	-				+0.5
2,736,308	-				+0.0
2,736,308	-				-2.1
2,736,308	-				-0.9
2,736,308	-				+0.8
2,736,371	-				+1.0
2,736,376	+				+0.2
2,736,376	+				-0.8
2,736,376	+				+0.8
2,736,377	-				+2.0
2,736,377	-				+0.4
2,736,377	-				+0.2
2,736,377	-				+0.2
2,736,377	-				+1.5
2,736,380	+				+0.2
2,736,380	+				+0.2
2,736,380	+				-0.4
2,736,380	+				-0.0
2,736,380	+				-0.5
2,736,380	+				+1.6
2,736,380	+				+0.5
2,736,380	+				+1.8
2,736,380	+				-0.1
2,736,380	+				+0.2
2,736,380	+				+0.4
2,736,380	+				+0.2
2,736,380	+				-0.6
2,736,381	-				+0.7
2,736,381	-				-0.6
2,736,381	-				+0.2
2,736,381	-				-0.6
2,736,381	-				+0.6
2,736,381	-				+0.2
2,736,381	-				+0.8
2,736,381	-				-0.5
2,736,381	-				+1.8
2,736,470	+				-0.2
2,736,470	+				+0.4
2,736,470	+				+0.2
2,736,485	+		DZA65_RS12785	0.12	+2.8
2,736,485	+		DZA65_RS12785	0.12	-0.3
2,736,485	+		DZA65_RS12785	0.12	-0.9
2,736,485	+		DZA65_RS12785	0.12	+0.1
2,736,485	+		DZA65_RS12785	0.12	+2.5
2,736,485	+		DZA65_RS12785	0.12	-2.4
2,736,485	+		DZA65_RS12785	0.12	+0.5
2,736,486	-		DZA65_RS12785	0.12	-2.4
2,736,486	-		DZA65_RS12785	0.12	-1.0
2,736,486	-		DZA65_RS12785	0.12	-2.6
2,736,555	+		DZA65_RS12785	0.22	+1.4
2,736,555	+		DZA65_RS12785	0.22	+0.9
2,736,618	+		DZA65_RS12785	0.30	+0.2
2,736,619	-		DZA65_RS12785	0.30	-2.1
2,736,619	-		DZA65_RS12785	0.30	-1.1
2,736,643	+		DZA65_RS12785	0.34	-0.1
2,736,643	+		DZA65_RS12785	0.34	+1.1
2,736,643	+		DZA65_RS12785	0.34	-3.5
2,736,643	+		DZA65_RS12785	0.34	+0.1
2,736,644	-		DZA65_RS12785	0.34	+0.7
2,736,644	-		DZA65_RS12785	0.34	-0.5
2,736,644	-		DZA65_RS12785	0.34	-1.6
2,736,644	-		DZA65_RS12785	0.34	-1.0
2,736,644	-		DZA65_RS12785	0.34	-0.4
2,736,644	-		DZA65_RS12785	0.34	-0.0
2,736,644	-		DZA65_RS12785	0.34	+0.7
2,736,644	-		DZA65_RS12785	0.34	+1.2
2,736,724	+		DZA65_RS12785	0.45	-0.8
2,736,724	+		DZA65_RS12785	0.45	+1.2
2,736,724	+		DZA65_RS12785	0.45	-2.4
2,736,724	+		DZA65_RS12785	0.45	+0.1
2,736,725	-		DZA65_RS12785	0.45	+0.9
2,736,725	-		DZA65_RS12785	0.45	+1.8
2,736,725	-		DZA65_RS12785	0.45	-0.5
2,736,750	+		DZA65_RS12785	0.49	-1.4
2,736,750	+		DZA65_RS12785	0.49	+0.1
2,736,799	+		DZA65_RS12785	0.55	-0.6
2,736,799	+		DZA65_RS12785	0.55	+0.3
2,736,800	-		DZA65_RS12785	0.56	+0.3
2,736,814	-		DZA65_RS12785	0.57	+1.0
2,736,860	+		DZA65_RS12785	0.64	-0.3
2,736,987	+		DZA65_RS12785	0.82	-0.6
2,736,987	+		DZA65_RS12785	0.82	+1.7
2,736,988	-		DZA65_RS12785	0.82	+1.5
2,736,988	-		DZA65_RS12785	0.82	-1.4
2,737,010	-		DZA65_RS12785	0.85	+0.1
2,737,092	+				-0.2
2,737,182	+				-2.4
2,737,182	+				-0.4
2,737,183	-				-1.1
2,737,183	-				-0.6
2,737,183	-				-0.8
2,737,183	-				+0.2
2,737,192	+				-0.1
2,737,192	+				+0.9
2,737,192	+				+0.0
2,737,192	+				+1.0
2,737,192	+				+0.7
2,737,192	+				-0.1
2,737,193	-				+1.8
2,737,193	-				+0.5
2,737,193	-				-0.3
2,737,193	-				+0.1
2,737,193	-				-0.2
2,737,195	+				+0.4
2,737,195	+				-0.6
2,737,195	+				-1.1
2,737,196	-				-0.8
2,737,196	-				-0.3
2,737,202	-				+0.4
2,737,314	+		DZA65_RS12790	0.13	-1.1
2,737,314	+		DZA65_RS12790	0.13	-0.5
2,737,314	+		DZA65_RS12790	0.13	-0.8
2,737,314	+		DZA65_RS12790	0.13	-0.7
2,737,314	+		DZA65_RS12790	0.13	+0.2
2,737,315	-		DZA65_RS12790	0.13	-0.5
2,737,315	-		DZA65_RS12790	0.13	-0.8
2,737,315	-		DZA65_RS12790	0.13	-0.0
2,737,334	+		DZA65_RS12790	0.14	-0.8
2,737,334	+		DZA65_RS12790	0.14	-0.0
2,737,334	+		DZA65_RS12790	0.14	+1.9
2,737,335	-		DZA65_RS12790	0.14	-0.4
2,737,335	-		DZA65_RS12790	0.14	-0.2
2,737,335	-		DZA65_RS12790	0.14	+0.2
2,737,340	+		DZA65_RS12790	0.15	-0.2
2,737,340	+		DZA65_RS12790	0.15	+0.1
2,737,415	+		DZA65_RS12790	0.20	-1.0
2,737,415	+		DZA65_RS12790	0.20	-0.4
2,737,415	+		DZA65_RS12790	0.20	+0.7
2,737,415	+		DZA65_RS12790	0.20	-0.8
2,737,415	+		DZA65_RS12790	0.20	-0.7
2,737,415	+		DZA65_RS12790	0.20	+0.4
2,737,415	+		DZA65_RS12790	0.20	-0.2
2,737,415	+		DZA65_RS12790	0.20	-0.0
2,737,416	-		DZA65_RS12790	0.20	+0.2
2,737,416	-		DZA65_RS12790	0.20	-0.4
2,737,416	-		DZA65_RS12790	0.20	-2.1
2,737,416	-		DZA65_RS12790	0.20	-1.1
2,737,416	-		DZA65_RS12790	0.20	-0.6
2,737,416	-		DZA65_RS12790	0.20	-1.7
2,737,416	-		DZA65_RS12790	0.20	-0.3
2,737,417	+		DZA65_RS12790	0.20	+0.3
2,737,551	-		DZA65_RS12790	0.30	+1.1
2,737,551	-		DZA65_RS12790	0.30	-0.1
2,737,551	-		DZA65_RS12790	0.30	+0.2
2,737,585	+		DZA65_RS12790	0.32	-0.2
2,737,585	+		DZA65_RS12790	0.32	+0.7
2,737,585	+		DZA65_RS12790	0.32	+0.4
2,737,585	+		DZA65_RS12790	0.32	-0.8
2,737,585	+		DZA65_RS12790	0.32	-0.1
2,737,585	+		DZA65_RS12790	0.32	-1.5
2,737,585	+		DZA65_RS12790	0.32	-0.1
2,737,586	-		DZA65_RS12790	0.32	+0.8
2,737,586	-		DZA65_RS12790	0.32	-0.3
2,737,586	-		DZA65_RS12790	0.32	-0.4
2,737,747	+		DZA65_RS12790	0.43	+0.2
2,737,747	+		DZA65_RS12790	0.43	-1.1
2,737,747	+		DZA65_RS12790	0.43	-0.1
2,737,747	+		DZA65_RS12790	0.43	-1.1
2,737,747	+		DZA65_RS12790	0.43	-0.5
2,737,747	+		DZA65_RS12790	0.43	+0.8
2,737,748	-		DZA65_RS12790	0.43	-0.8
2,737,813	+		DZA65_RS12790	0.48	-1.0
2,737,813	+		DZA65_RS12790	0.48	+0.6
2,737,814	-		DZA65_RS12790	0.48	-1.0
2,737,814	-		DZA65_RS12790	0.48	-0.1
2,737,937	+		DZA65_RS12790	0.57	-1.2
2,737,942	+		DZA65_RS12790	0.57	-1.1
2,737,942	+		DZA65_RS12790	0.57	-1.4
2,737,942	+		DZA65_RS12790	0.57	-0.8
2,737,942	+		DZA65_RS12790	0.57	-0.3
2,737,942	+		DZA65_RS12790	0.57	+0.5
2,737,942	+		DZA65_RS12790	0.57	+0.2
2,737,943	-		DZA65_RS12790	0.57	+0.5
2,737,943	-		DZA65_RS12790	0.57	+0.5
2,737,943	-		DZA65_RS12790	0.57	-1.6
2,737,943	-		DZA65_RS12790	0.57	+0.7
2,737,943	-		DZA65_RS12790	0.57	+0.0
2,737,943	-		DZA65_RS12790	0.57	+0.2
2,737,943	-		DZA65_RS12790	0.57	-1.2
2,737,943	-		DZA65_RS12790	0.57	+0.6
2,737,972	+		DZA65_RS12790	0.59	+0.2
2,737,973	-		DZA65_RS12790	0.59	+1.2
2,738,005	+		DZA65_RS12790	0.62	-2.2
2,738,006	-		DZA65_RS12790	0.62	+0.0
2,738,055	+		DZA65_RS12790	0.65	+0.9
2,738,055	+		DZA65_RS12790	0.65	-0.4
2,738,055	+		DZA65_RS12790	0.65	+2.4
2,738,055	+		DZA65_RS12790	0.65	-0.9
2,738,055	+		DZA65_RS12790	0.65	-1.6
2,738,055	+		DZA65_RS12790	0.65	+1.1
2,738,055	+		DZA65_RS12790	0.65	-1.0
2,738,056	-		DZA65_RS12790	0.65	-0.3
2,738,056	-		DZA65_RS12790	0.65	+1.0
2,738,056	-		DZA65_RS12790	0.65	-0.1
2,738,056	-		DZA65_RS12790	0.65	-0.1
2,738,056	-		DZA65_RS12790	0.65	-0.1
2,738,056	-		DZA65_RS12790	0.65	+0.1
2,738,083	+		DZA65_RS12790	0.67	+0.9
2,738,083	+		DZA65_RS12790	0.67	-0.8
2,738,083	+		DZA65_RS12790	0.67	+0.8
2,738,083	+		DZA65_RS12790	0.67	-1.3
2,738,083	+		DZA65_RS12790	0.67	-1.4
2,738,083	+		DZA65_RS12790	0.67	-0.2
2,738,089	+		DZA65_RS12790	0.67	-0.2
2,738,089	+		DZA65_RS12790	0.67	-0.1
2,738,089	+		DZA65_RS12790	0.67	+0.4
2,738,090	-		DZA65_RS12790	0.68	+0.7
2,738,090	-		DZA65_RS12790	0.68	-0.4
2,738,150	-		DZA65_RS12790	0.72	-0.4
2,738,274	+		DZA65_RS12790	0.80	-0.1
2,738,275	-		DZA65_RS12790	0.81	+0.5
2,738,351	+		DZA65_RS12790	0.86	-0.1
2,738,351	+		DZA65_RS12790	0.86	-0.9
2,738,352	-		DZA65_RS12790	0.86	-0.8
2,738,446	+				-0.6
2,738,647	+		DZA65_RS12795	0.14	-0.0
2,738,648	-		DZA65_RS12795	0.14	+1.7
2,738,957	-		DZA65_RS12795	0.58	+0.2
2,738,994	+		DZA65_RS12795	0.64	+1.7
2,738,995	-		DZA65_RS12795	0.64	-0.9
2,739,138	+		DZA65_RS12795	0.84	+0.2
2,739,139	-		DZA65_RS12795	0.84	+0.2
2,739,139	-		DZA65_RS12795	0.84	-0.5
2,739,139	-		DZA65_RS12795	0.84	-0.8
2,739,142	-		DZA65_RS12795	0.85	-0.0
2,739,142	-		DZA65_RS12795	0.85	-1.0
2,739,184	-				+0.6
2,739,184	-				-0.3
2,739,184	-				-0.0
2,739,224	-				+0.0
2,739,233	+				+0.1
2,739,233	+				-0.2
2,739,233	+				-0.9
2,739,233	+				+0.7
2,739,233	+				-0.4
2,739,233	+				-0.2
2,739,234	-				-0.5
2,739,234	-				+0.2
2,739,234	-				+0.7
2,739,234	-				-0.3
2,739,234	-				+1.2
2,739,234	-				+0.2
2,739,234	-				-0.2
2,739,234	-				+0.0
2,739,234	-				+0.7
2,739,234	-				-0.0
2,739,282	-				+0.2
2,739,335	-				-0.4
2,739,343	-				-1.4
2,739,343	-				-0.3
2,739,436	+				+0.4
2,739,436	+				-0.8
2,739,437	-				-0.1
2,739,437	-				+0.2
2,739,437	-				-0.3