Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12695

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,713,956	+		DZA65_RS12690	0.51	+0.6
2,713,956	+		DZA65_RS12690	0.51	-0.9
2,713,956	+		DZA65_RS12690	0.51	-3.0
2,713,957	-		DZA65_RS12690	0.52	-1.5
2,713,957	-		DZA65_RS12690	0.52	+0.5
2,713,957	-		DZA65_RS12690	0.52	+0.4
2,713,957	-		DZA65_RS12690	0.52	+0.2
2,713,957	-		DZA65_RS12690	0.52	+1.2
2,714,031	+		DZA65_RS12690	0.57	+0.2
2,714,031	+		DZA65_RS12690	0.57	-0.1
2,714,290	-		DZA65_RS12690	0.77	-1.8
2,714,305	+		DZA65_RS12690	0.78	-1.7
2,714,305	+		DZA65_RS12690	0.78	-1.1
2,714,305	+		DZA65_RS12690	0.78	+0.8
2,714,306	-		DZA65_RS12690	0.78	-1.8
2,714,306	-		DZA65_RS12690	0.78	-0.2
2,714,306	-		DZA65_RS12690	0.78	-0.9
2,714,306	-		DZA65_RS12690	0.78	+0.5
2,714,544	+				+1.2
2,714,544	+				-0.5
2,714,544	+				+1.0
2,714,544	+				-0.2
2,714,544	+				-0.4
2,714,544	+				+1.8
2,714,544	+				-0.5
2,714,545	-				-0.4
2,714,545	-				-1.2
2,714,545	-				+0.5
2,714,545	-				-0.6
2,714,545	-				-0.1
2,714,545	-				+0.7
2,714,545	-				-0.2
2,714,545	-				+1.2
2,714,545	-				-2.0
2,714,545	-				-0.1
2,714,545	-				+0.5
2,714,545	-				-0.0
2,714,545	-				-1.4
2,714,545	-				-0.5
2,714,545	-				-2.1
2,714,545	-				-0.1
2,714,621	+				-0.1
2,714,621	+				+0.1
2,714,621	+				-0.3
2,714,622	-				-1.4
2,714,622	-				-0.9
2,714,622	-				-0.1
2,714,628	+				-2.6
2,714,629	-				+0.0
2,714,713	+				+0.5
2,714,713	+				-0.2
2,714,791	-				-0.7
2,714,791	-				+0.1
2,714,791	-				-0.3
2,714,797	-				-0.1
2,714,800	+				-0.5
2,714,800	+				+0.8
2,714,800	+				-0.0
2,714,801	-				+1.6
2,714,801	-				-1.7
2,714,810	+				+0.3
2,714,810	+				+0.2
2,714,811	-				+0.2
2,714,814	-				-0.5
2,714,814	-				-1.6
2,714,873	-				+2.2
2,714,880	+				-0.4
2,714,880	+				+0.0
2,714,881	-				-0.3
2,714,905	+				+0.3
2,714,905	+				-0.6
2,714,906	-				-0.6
2,714,906	-				+1.2
2,714,941	-				-0.8
2,714,941	-				-0.8
2,714,958	+				+0.4
2,714,958	+				-2.5
2,714,960	-				-0.6
2,714,979	+				+0.6
2,714,979	+				+1.8
2,714,980	-				-0.6
2,714,980	-				+0.7
2,715,060	+				-0.5
2,715,060	+				+0.9
2,715,061	-				+0.2
2,715,061	-				-1.6
2,715,079	-				-0.9
2,715,099	+				+2.2
2,715,106	-		DZA65_RS12695	0.10	+0.7
2,715,153	+		DZA65_RS12695	0.13	+0.8
2,715,154	-		DZA65_RS12695	0.13	-0.2
2,715,154	-		DZA65_RS12695	0.13	+0.6
2,715,154	-		DZA65_RS12695	0.13	-1.4
2,715,310	+		DZA65_RS12695	0.22	-0.6
2,715,310	+		DZA65_RS12695	0.22	+0.8
2,715,310	+		DZA65_RS12695	0.22	-0.8
2,715,311	-		DZA65_RS12695	0.22	+1.4
2,715,373	-		DZA65_RS12695	0.25	-0.8
2,715,394	-		DZA65_RS12695	0.26	-0.7
2,715,394	-		DZA65_RS12695	0.26	-0.8
2,715,440	-		DZA65_RS12695	0.29	+0.5
2,715,440	-		DZA65_RS12695	0.29	+0.7
2,715,440	-		DZA65_RS12695	0.29	+1.3
2,715,440	-		DZA65_RS12695	0.29	-0.8
2,715,452	-		DZA65_RS12695	0.29	-0.1
2,715,500	+		DZA65_RS12695	0.32	+0.2
2,715,522	-		DZA65_RS12695	0.33	+0.5
2,715,557	-		DZA65_RS12695	0.35	+0.8
2,715,654	+		DZA65_RS12695	0.40	-2.1
2,715,654	+		DZA65_RS12695	0.40	-1.7
2,715,655	-		DZA65_RS12695	0.40	+0.2
2,715,655	-		DZA65_RS12695	0.40	+0.5
2,715,685	+		DZA65_RS12695	0.42	+0.2
2,715,685	+		DZA65_RS12695	0.42	+0.7
2,715,685	+		DZA65_RS12695	0.42	-1.8
2,715,685	+		DZA65_RS12695	0.42	-0.9
2,715,685	+		DZA65_RS12695	0.42	-0.2
2,715,686	-		DZA65_RS12695	0.42	+1.0
2,715,686	-		DZA65_RS12695	0.42	-0.6
2,715,686	-		DZA65_RS12695	0.42	-2.4
2,715,686	-		DZA65_RS12695	0.42	-1.1
2,715,687	+		DZA65_RS12695	0.42	-0.0
2,715,688	-		DZA65_RS12695	0.42	+0.7
2,715,739	+		DZA65_RS12695	0.45	-0.6
2,715,739	+		DZA65_RS12695	0.45	+0.3
2,715,739	+		DZA65_RS12695	0.45	+3.1
2,715,740	-		DZA65_RS12695	0.45	+0.1
2,715,912	+		DZA65_RS12695	0.54	-2.8
2,715,950	+		DZA65_RS12695	0.57	+0.9
2,715,950	+		DZA65_RS12695	0.57	-0.1
2,715,950	+		DZA65_RS12695	0.57	+1.1
2,715,950	+		DZA65_RS12695	0.57	-2.1
2,715,951	-		DZA65_RS12695	0.57	-0.5
2,715,987	-		DZA65_RS12695	0.59	-0.3
2,716,009	+		DZA65_RS12695	0.60	-0.7
2,716,010	-		DZA65_RS12695	0.60	-0.6
2,716,192	+		DZA65_RS12695	0.70	-1.4
2,716,192	+		DZA65_RS12695	0.70	+0.5
2,716,192	+		DZA65_RS12695	0.70	+0.2
2,716,192	+		DZA65_RS12695	0.70	-0.2
2,716,192	+		DZA65_RS12695	0.70	-0.9
2,716,192	+		DZA65_RS12695	0.70	+0.3
2,716,192	+		DZA65_RS12695	0.70	-0.9
2,716,192	+		DZA65_RS12695	0.70	-1.4
2,716,192	+		DZA65_RS12695	0.70	+0.2
2,716,192	+		DZA65_RS12695	0.70	-1.4
2,716,192	+		DZA65_RS12695	0.70	-1.4
2,716,192	+		DZA65_RS12695	0.70	-0.5
2,716,192	+		DZA65_RS12695	0.70	+0.0
2,716,192	+		DZA65_RS12695	0.70	-2.6
2,716,192	+		DZA65_RS12695	0.70	-2.8
2,716,192	+		DZA65_RS12695	0.70	-1.1
2,716,192	+		DZA65_RS12695	0.70	-0.6
2,716,192	+		DZA65_RS12695	0.70	+0.3
2,716,192	+		DZA65_RS12695	0.70	-0.1
2,716,192	+		DZA65_RS12695	0.70	-1.6
2,716,192	+		DZA65_RS12695	0.70	+0.1
2,716,192	+		DZA65_RS12695	0.70	+0.2
2,716,193	-		DZA65_RS12695	0.70	-1.2
2,716,193	-		DZA65_RS12695	0.70	-0.0
2,716,193	-		DZA65_RS12695	0.70	-0.1
2,716,193	-		DZA65_RS12695	0.70	-1.6
2,716,193	-		DZA65_RS12695	0.70	-0.8
2,716,193	-		DZA65_RS12695	0.70	+2.2
2,716,193	-		DZA65_RS12695	0.70	-0.4
2,716,193	-		DZA65_RS12695	0.70	-1.6
2,716,193	-		DZA65_RS12695	0.70	+0.6
2,716,193	-		DZA65_RS12695	0.70	-0.2
2,716,193	-		DZA65_RS12695	0.70	+0.1
2,716,194	+		DZA65_RS12695	0.70	-1.4
2,716,194	+				+0.2
2,716,194	+		DZA65_RS12695	0.70	+0.2
2,716,195	-		DZA65_RS12695	0.70	+0.3
2,716,195	-		DZA65_RS12695	0.70	+0.8
2,716,227	-		DZA65_RS12695	0.72	-0.2
2,716,303	+		DZA65_RS12695	0.76	+1.6
2,716,303	+		DZA65_RS12695	0.76	+0.1
2,716,303	+		DZA65_RS12695	0.76	+0.3
2,716,304	-		DZA65_RS12695	0.76	-0.3
2,716,381	+		DZA65_RS12695	0.80	+0.6
2,716,381	+		DZA65_RS12695	0.80	-0.7
2,716,381	+		DZA65_RS12695	0.80	-0.5
2,716,382	-		DZA65_RS12695	0.80	-0.2
2,716,383	+		DZA65_RS12695	0.80	-1.2
2,716,384	-		DZA65_RS12695	0.80	+0.9
2,716,696	+				+0.2
2,716,696	+				+1.9
2,716,696	+				-0.0
2,716,696	+				+1.7
2,716,696	+				+0.3
2,716,697	-				+0.5
2,716,697	-				+0.5
2,716,697	-				-2.8
2,716,697	-				+0.4
2,716,697	-				-0.1
2,716,716	+				+2.0
2,716,716	+				+0.2
2,716,716	+				-2.4
2,716,716	+				-0.5
2,716,716	+				-1.4
2,716,717	-				-0.7
2,716,717	-				-0.5
2,716,717	-				+0.6
2,716,717	-				-1.0
2,716,717	-				-0.8
2,716,717	-				-0.0
2,716,717	-				-0.2
2,716,717	-				+0.8
2,716,717	-				+1.2
2,716,718	+				+2.8
2,716,719	-				-1.6
2,716,719	-				-0.0
2,716,741	+				+0.4
2,716,741	+				+0.6
2,716,741	+				+1.1
2,716,742	-				-0.8
2,716,745	+				+0.2
2,716,746	-				-1.1
2,716,805	+				+0.5
2,716,805	+				+0.5
2,716,806	-				-0.2
2,716,814	+				-0.2
2,716,816	+				+1.1
2,716,816	+				-0.6
2,716,816	+				-0.2
2,716,817	-				+1.2
2,716,817	-				-0.1
2,716,818	+				+0.7
2,716,818	+				+0.1
2,716,819	-				-0.4
2,716,819	-				+0.8
2,716,874	+				+0.1
2,716,874	+				+1.6
2,716,874	+				+0.4
2,716,875	-				+0.8
2,716,875	-				+0.0
2,716,897	-				+0.5
2,716,932	-				+0.0
2,716,932	-				+0.2
2,717,001	+				+0.2
2,717,001	+				+0.7
2,717,002	-				-2.1
2,717,003	+				+0.5
2,717,003	+				-1.3
2,717,012	+				-0.2
2,717,018	+				+1.5
2,717,075	+				-0.8
2,717,075	+				-0.3
2,717,075	+				-0.1
2,717,075	+				-1.1
2,717,075	+				+0.9
2,717,075	+				+2.2
2,717,075	+				-0.8
2,717,075	+				+0.1
2,717,075	+				-0.1
2,717,075	+				+0.2
2,717,075	+				-0.4
2,717,076	-				+1.5
2,717,076	-				-1.8
2,717,076	-				+0.2
2,717,076	-				+0.6
2,717,076	-				-0.4
2,717,076	-				-1.0
2,717,076	-				+0.8
2,717,077	+				+0.9
2,717,077	+				-1.1
2,717,077	+				+1.1
2,717,077	+				+0.2
2,717,077	+				-0.2
2,717,077	+				-0.5
2,717,077	+				+1.6
2,717,077	+				-1.2
2,717,078	-				-1.8
2,717,078	-				-0.2
2,717,078	-				-0.1
2,717,078	-				+0.2
2,717,078	-				+0.6
2,717,078	-				-2.4
2,717,078	-				+0.2
2,717,078	-				-1.6
2,717,079	+				+0.2
2,717,079	+				-1.2
2,717,080	-				+0.2
2,717,080	-				-0.2
2,717,080	-				-0.4
2,717,080	-				+1.4
2,717,085	-				-1.1
2,717,085	-				+0.5
2,717,085	-				-2.0
2,717,165	+				+0.1
2,717,201	+				-0.1
2,717,201	+				+1.4
2,717,202	-				+0.1
2,717,202	-				+0.8
2,717,203	+				-2.1
2,717,203	+				-0.8
2,717,203	+				-0.3
2,717,203	+				+0.9
2,717,203	+				-0.2
2,717,203	+				+0.3
2,717,203	+				+0.5
2,717,203	+				-0.4
2,717,204	-				-0.1
2,717,204	-				+0.2
2,717,223	+				+1.4
2,717,223	+				+3.2
2,717,223	+				+0.8
2,717,223	+				-0.3
2,717,223	+				+0.2
2,717,223	+				+0.5
2,717,223	+				-1.4
2,717,241	-				+0.2
2,717,246	+				+0.2
2,717,300	+				+0.2
2,717,353	+				-0.7
2,717,353	+				+0.5
2,717,353	+				+1.2
2,717,353	+				-0.5
2,717,353	+				-0.2
2,717,354	-				+0.8
2,717,354	-				-0.8
2,717,354	-				+0.5
2,717,354	-				-0.8
2,717,360	+				-0.3
2,717,360	+				-0.4
2,717,361	-				+0.9
2,717,365	+				-0.7
2,717,365	+				-0.1
2,717,377	+				-0.5
2,717,447	-		DZA65_RS12700	0.12	-0.2
2,717,544	-		DZA65_RS12700	0.18	-0.8
2,717,597	+		DZA65_RS12700	0.21	-0.9
2,717,597	+		DZA65_RS12700	0.21	+0.2
2,717,597	+		DZA65_RS12700	0.21	-0.4
2,717,597	+		DZA65_RS12700	0.21	+0.2
2,717,598	-		DZA65_RS12700	0.21	-0.2
2,717,598	-		DZA65_RS12700	0.21	-0.3
2,717,599	+		DZA65_RS12700	0.21	+0.6
2,717,599	+		DZA65_RS12700	0.21	-0.6
2,717,599	+		DZA65_RS12700	0.21	+0.9
2,717,599	+		DZA65_RS12700	0.21	-0.4
2,717,599	+		DZA65_RS12700	0.21	+0.9
2,717,599	+		DZA65_RS12700	0.21	-1.1
2,717,599	+		DZA65_RS12700	0.21	-0.0
2,717,599	+		DZA65_RS12700	0.21	+0.4
2,717,599	+		DZA65_RS12700	0.21	-1.3
2,717,599	+		DZA65_RS12700	0.21	+0.8
2,717,599	+		DZA65_RS12700	0.21	+0.2
2,717,599	+		DZA65_RS12700	0.21	+0.4
2,717,599	+		DZA65_RS12700	0.21	+0.1
2,717,599	+		DZA65_RS12700	0.21	-0.8
2,717,599	+		DZA65_RS12700	0.21	+0.5
2,717,600	-		DZA65_RS12700	0.22	+1.5
2,717,600	-		DZA65_RS12700	0.22	-0.1
2,717,600	-		DZA65_RS12700	0.22	+0.1
2,717,600	-		DZA65_RS12700	0.22	-1.0
2,717,600	-		DZA65_RS12700	0.22	+0.2
2,717,600	-		DZA65_RS12700	0.22	+1.9
2,717,600	-		DZA65_RS12700	0.22	+0.6
2,717,600	-		DZA65_RS12700	0.22	+0.8
2,717,600	-		DZA65_RS12700	0.22	+0.2
2,717,600	-		DZA65_RS12700	0.22	+0.0
2,717,600	-		DZA65_RS12700	0.22	+0.2
2,717,600	-		DZA65_RS12700	0.22	+0.0
2,717,600	-		DZA65_RS12700	0.22	+1.7
2,717,654	+		DZA65_RS12700	0.25	-1.7
2,717,655	-		DZA65_RS12700	0.25	+0.9
2,717,655	-		DZA65_RS12700	0.25	+0.7
2,717,655	-		DZA65_RS12700	0.25	-1.8
2,717,680	+		DZA65_RS12700	0.27	+0.3
2,717,680	+		DZA65_RS12700	0.27	+0.7
2,717,681	-		DZA65_RS12700	0.27	-0.2
2,717,694	+		DZA65_RS12700	0.28	-0.2
2,717,694	+		DZA65_RS12700	0.28	+0.7
2,717,695	-		DZA65_RS12700	0.28	-2.1
2,717,695	-		DZA65_RS12700	0.28	-0.1
2,717,695	-		DZA65_RS12700	0.28	-2.1