Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12690

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,712,288	+		DZA65_RS12680	0.74	+0.6
2,712,300	-		DZA65_RS12680	0.75	-0.8
2,712,300	-		DZA65_RS12680	0.75	+0.6
2,712,300	-		DZA65_RS12680	0.75	-0.1
2,712,300	-		DZA65_RS12680	0.75	-1.8
2,712,300	-		DZA65_RS12680	0.75	+0.0
2,712,300	-		DZA65_RS12680	0.75	+1.3
2,712,337	+		DZA65_RS12680	0.78	-1.0
2,712,338	-		DZA65_RS12680	0.78	+2.0
2,712,338	-		DZA65_RS12680	0.78	+0.7
2,712,338	-		DZA65_RS12680	0.78	-0.4
2,712,338	-		DZA65_RS12680	0.78	-0.1
2,712,447	+		DZA65_RS12680	0.87	+0.1
2,712,447	+		DZA65_RS12680	0.87	+0.2
2,712,508	+				-1.4
2,712,508	+				+1.2
2,712,525	+				+1.4
2,712,526	-				-0.4
2,712,526	-				-0.3
2,712,526	-				+1.2
2,712,551	+				-1.6
2,712,559	+				-0.0
2,712,559	+				-1.2
2,712,559	+				-0.8
2,712,560	-				+0.2
2,712,563	+				+0.6
2,712,563	+				+0.8
2,712,563	+				+0.2
2,712,564	-				-0.2
2,712,643	+				-0.5
2,712,654	+				+0.1
2,712,654	+				+0.2
2,712,655	-				-2.1
2,712,655	-				+0.6
2,712,655	-				+0.7
2,712,680	+				+0.4
2,712,680	+				-0.5
2,712,680	+				-1.6
2,712,680	+				-0.5
2,712,680	+				-2.1
2,712,680	+				-0.7
2,712,680	+				-0.6
2,712,680	+				+1.2
2,712,680	+				-1.4
2,712,681	-				+1.1
2,712,681	-				+0.4
2,712,681	-				+0.2
2,712,681	-				+1.4
2,712,681	-				+0.0
2,712,681	-				-1.0
2,712,681	-				+0.9
2,712,681	-				+0.2
2,712,681	-				-0.5
2,712,681	-				+1.5
2,712,681	-				+0.2
2,712,746	+		DZA65_RS12685	0.27	+0.1
2,712,746	+		DZA65_RS12685	0.27	-1.4
2,712,746	+		DZA65_RS12685	0.27	-1.1
2,712,884	+				-0.5
2,712,917	+				+0.1
2,713,024	+				-0.4
2,713,025	-				+1.0
2,713,027	+				+0.2
2,713,027	+				+0.4
2,713,027	+				+0.2
2,713,028	-				+0.8
2,713,054	-				+0.4
2,713,397	+				-0.0
2,713,397	+				-0.7
2,713,397	+				+0.9
2,713,416	+		DZA65_RS12690	0.10	-1.0
2,713,416	+		DZA65_RS12690	0.10	-4.2
2,713,416	+		DZA65_RS12690	0.10	+0.1
2,713,416	+		DZA65_RS12690	0.10	-0.4
2,713,465	-		DZA65_RS12690	0.14	-2.0
2,713,493	+		DZA65_RS12690	0.16	+0.0
2,713,493	+		DZA65_RS12690	0.16	-0.1
2,713,493	+				+1.2
2,713,493	+		DZA65_RS12690	0.16	+0.2
2,713,539	+		DZA65_RS12690	0.20	-1.0
2,713,568	+		DZA65_RS12690	0.22	-0.8
2,713,568	+		DZA65_RS12690	0.22	+0.4
2,713,568	+		DZA65_RS12690	0.22	+0.4
2,713,568	+		DZA65_RS12690	0.22	+0.8
2,713,568	+		DZA65_RS12690	0.22	+0.2
2,713,568	+		DZA65_RS12690	0.22	+2.0
2,713,569	-		DZA65_RS12690	0.22	-2.5
2,713,569	-		DZA65_RS12690	0.22	-0.1
2,713,569	-		DZA65_RS12690	0.22	+2.2
2,713,569	-		DZA65_RS12690	0.22	+0.5
2,713,572	+		DZA65_RS12690	0.22	+0.4
2,713,572	+		DZA65_RS12690	0.22	-0.3
2,713,572	+		DZA65_RS12690	0.22	-1.1
2,713,572	+		DZA65_RS12690	0.22	-1.8
2,713,572	+		DZA65_RS12690	0.22	-0.5
2,713,572	+		DZA65_RS12690	0.22	-0.4
2,713,572	+		DZA65_RS12690	0.22	+0.2
2,713,572	+		DZA65_RS12690	0.22	+1.0
2,713,573	-		DZA65_RS12690	0.22	+0.2
2,713,573	-		DZA65_RS12690	0.22	+0.4
2,713,573	-		DZA65_RS12690	0.22	+1.0
2,713,612	-		DZA65_RS12690	0.25	-0.1
2,713,612	-		DZA65_RS12690	0.25	-1.1
2,713,612	-		DZA65_RS12690	0.25	-0.4
2,713,612	-		DZA65_RS12690	0.25	+0.1
2,713,748	+		DZA65_RS12690	0.36	+1.2
2,713,748	+		DZA65_RS12690	0.36	+0.4
2,713,749	-		DZA65_RS12690	0.36	-0.5
2,713,788	+		DZA65_RS12690	0.39	-1.1
2,713,788	+		DZA65_RS12690	0.39	-1.3
2,713,788	+		DZA65_RS12690	0.39	-0.4
2,713,789	-		DZA65_RS12690	0.39	-0.3
2,713,789	-		DZA65_RS12690	0.39	-0.5
2,713,815	+		DZA65_RS12690	0.41	-0.2
2,713,815	+				+1.8
2,713,815	+				-2.4
2,713,815	+		DZA65_RS12690	0.41	-1.3
2,713,815	+		DZA65_RS12690	0.41	+0.8
2,713,815	+		DZA65_RS12690	0.41	+0.8
2,713,816	-		DZA65_RS12690	0.41	-0.6
2,713,816	-		DZA65_RS12690	0.41	-1.8
2,713,816	-		DZA65_RS12690	0.41	-0.8
2,713,956	+		DZA65_RS12690	0.51	+0.6
2,713,956	+		DZA65_RS12690	0.51	-0.9
2,713,956	+		DZA65_RS12690	0.51	-3.0
2,713,957	-		DZA65_RS12690	0.52	-1.5
2,713,957	-		DZA65_RS12690	0.52	+0.5
2,713,957	-		DZA65_RS12690	0.52	+0.4
2,713,957	-		DZA65_RS12690	0.52	+0.2
2,713,957	-		DZA65_RS12690	0.52	+1.2
2,714,031	+		DZA65_RS12690	0.57	+0.2
2,714,031	+		DZA65_RS12690	0.57	-0.1
2,714,290	-		DZA65_RS12690	0.77	-1.8
2,714,305	+		DZA65_RS12690	0.78	-1.7
2,714,305	+		DZA65_RS12690	0.78	-1.1
2,714,305	+		DZA65_RS12690	0.78	+0.8
2,714,306	-		DZA65_RS12690	0.78	-1.8
2,714,306	-		DZA65_RS12690	0.78	-0.2
2,714,306	-		DZA65_RS12690	0.78	-0.9
2,714,306	-		DZA65_RS12690	0.78	+0.5
2,714,544	+				+1.2
2,714,544	+				-0.5
2,714,544	+				+1.0
2,714,544	+				-0.2
2,714,544	+				-0.4
2,714,544	+				+1.8
2,714,544	+				-0.5
2,714,545	-				-0.4
2,714,545	-				-1.2
2,714,545	-				+0.5
2,714,545	-				-0.6
2,714,545	-				-0.1
2,714,545	-				+0.7
2,714,545	-				-0.2
2,714,545	-				+1.2
2,714,545	-				-2.0
2,714,545	-				-0.1
2,714,545	-				+0.5
2,714,545	-				-0.0
2,714,545	-				-1.4
2,714,545	-				-0.5
2,714,545	-				-2.1
2,714,545	-				-0.1
2,714,621	+				-0.1
2,714,621	+				+0.1
2,714,621	+				-0.3
2,714,622	-				-1.4
2,714,622	-				-0.9
2,714,622	-				-0.1
2,714,628	+				-2.6
2,714,629	-				+0.0
2,714,713	+				+0.5
2,714,713	+				-0.2
2,714,791	-				-0.7
2,714,791	-				+0.1
2,714,791	-				-0.3
2,714,797	-				-0.1
2,714,800	+				-0.5
2,714,800	+				+0.8
2,714,800	+				-0.0
2,714,801	-				+1.6
2,714,801	-				-1.7
2,714,810	+				+0.3
2,714,810	+				+0.2
2,714,811	-				+0.2
2,714,814	-				-0.5
2,714,814	-				-1.6
2,714,873	-				+2.2
2,714,880	+				-0.4
2,714,880	+				+0.0
2,714,881	-				-0.3
2,714,905	+				+0.3
2,714,905	+				-0.6
2,714,906	-				-0.6
2,714,906	-				+1.2
2,714,941	-				-0.8
2,714,941	-				-0.8
2,714,958	+				+0.4
2,714,958	+				-2.5
2,714,960	-				-0.6
2,714,979	+				+0.6
2,714,979	+				+1.8
2,714,980	-				-0.6
2,714,980	-				+0.7
2,715,060	+				-0.5
2,715,060	+				+0.9
2,715,061	-				+0.2
2,715,061	-				-1.6
2,715,079	-				-0.9
2,715,099	+				+2.2
2,715,106	-		DZA65_RS12695	0.10	+0.7
2,715,153	+		DZA65_RS12695	0.13	+0.8
2,715,154	-		DZA65_RS12695	0.13	-0.2
2,715,154	-		DZA65_RS12695	0.13	+0.6
2,715,154	-		DZA65_RS12695	0.13	-1.4
2,715,310	+		DZA65_RS12695	0.22	-0.6
2,715,310	+		DZA65_RS12695	0.22	+0.8
2,715,310	+		DZA65_RS12695	0.22	-0.8
2,715,311	-		DZA65_RS12695	0.22	+1.4
2,715,373	-		DZA65_RS12695	0.25	-0.8
2,715,394	-		DZA65_RS12695	0.26	-0.7
2,715,394	-		DZA65_RS12695	0.26	-0.8
2,715,440	-		DZA65_RS12695	0.29	+0.5
2,715,440	-		DZA65_RS12695	0.29	+0.7
2,715,440	-		DZA65_RS12695	0.29	+1.3
2,715,440	-		DZA65_RS12695	0.29	-0.8
2,715,452	-		DZA65_RS12695	0.29	-0.1
2,715,500	+		DZA65_RS12695	0.32	+0.2
2,715,522	-		DZA65_RS12695	0.33	+0.5
2,715,557	-		DZA65_RS12695	0.35	+0.8