Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,695,140	+		DZA65_RS12575	0.55	-0.9
2,695,140	+		DZA65_RS12575	0.55	+0.5
2,695,141	-		DZA65_RS12575	0.55	-0.6
2,695,169	+		DZA65_RS12575	0.68	-1.4
2,695,169	+		DZA65_RS12575	0.68	-0.4
2,695,192	+		DZA65_RS12575	0.78	+0.0
2,695,193	-		DZA65_RS12575	0.78	-1.0
2,695,210	+		DZA65_RS12575	0.86	+0.2
2,695,210	+		DZA65_RS12575	0.86	-0.2
2,695,211	-		DZA65_RS12575	0.86	-1.1
2,695,211	-		DZA65_RS12575	0.86	+0.8
2,695,328	+				+1.9
2,695,344	+				+0.0
2,695,345	-				-0.5
2,695,345	-				-1.1
2,695,382	-				-0.4
2,695,410	+				+0.0
2,695,412	+				-0.8
2,695,413	-				-0.1
2,695,413	-				-0.7
2,695,445	+				+0.1
2,695,463	+				+0.3
2,695,477	+				-0.7
2,695,478	-				-0.8
2,695,478	-				+1.8
2,695,552	+				-0.8
2,695,552	+				-1.8
2,695,553	-				-2.3
2,695,555	+				-1.5
2,695,586	+				-0.8
2,695,587	-				+0.4
2,695,587	-				+2.0
2,695,587	-				-0.9
2,695,587	-				+0.5
2,695,587	-				-1.6
2,695,628	+				-0.8
2,695,646	+				+0.6
2,695,689	-				+1.0
2,695,719	-				+0.1
2,695,734	+				+1.9
2,695,734	+				-0.5
2,695,735	-				-0.3
2,695,735	-				+0.8
2,695,735	-				+0.2
2,695,751	-				+0.6
2,695,751	-				+1.2
2,695,766	+				+0.5
2,695,766	+				-0.7
2,695,766	+				-0.2
2,695,767	-				+0.8
2,695,780	+				-0.1
2,695,805	-				+0.5
2,695,838	-				-1.2
2,695,838	-				+0.2
2,695,838	-				+0.2
2,695,843	+				-0.3
2,695,843	+				-0.2
2,695,843	+				+0.2
2,695,844	-				-1.4
2,695,844	-				+1.1
2,695,844	-				+0.2
2,695,900	+		DZA65_RS12580	0.25	+1.3
2,695,903	+		DZA65_RS12580	0.26	+1.4
2,695,904	-		DZA65_RS12580	0.27	+0.7
2,695,904	-		DZA65_RS12580	0.27	-0.3
2,695,935	+		DZA65_RS12580	0.42	+0.9
2,695,936	-		DZA65_RS12580	0.43	-0.4
2,696,051	-				+1.0
2,696,051	-				-0.1
2,696,061	+				-0.4
2,696,062	-				+0.2
2,696,062	-				+0.4
2,696,124	+				-0.1
2,696,124	+				-0.7
2,696,124	+				-0.2
2,696,124	+				+1.2
2,696,124	+				-1.1
2,696,125	-				+0.6
2,696,125	-				-1.8
2,696,125	-				-0.3
2,696,125	-				+2.9
2,696,125	-				+0.2
2,696,125	-				-0.5
2,696,125	-				+1.8
2,696,193	-		DZA65_RS12585	0.14	+0.8
2,696,284	-		DZA65_RS12585	0.34	-0.5
2,696,371	-		DZA65_RS12585	0.53	-2.8
2,696,394	+		DZA65_RS12585	0.58	-2.0
2,696,395	-		DZA65_RS12585	0.58	+0.4
2,696,407	-		DZA65_RS12585	0.60	+0.2
2,696,497	+		DZA65_RS12585	0.80	-0.0
2,696,497	+		DZA65_RS12585	0.80	-0.9
2,696,498	-		DZA65_RS12585	0.80	-0.8
2,696,498	-		DZA65_RS12585	0.80	-2.1
2,696,498	-		DZA65_RS12585	0.80	+0.2
2,696,498	-		DZA65_RS12585	0.80	+0.4
2,696,498	-		DZA65_RS12585	0.80	-0.2
2,696,498	-		DZA65_RS12585	0.80	-0.5
2,696,498	-		DZA65_RS12585	0.80	-0.5
2,696,548	+				+0.4
2,696,548	+				+0.4
2,696,548	+				-0.1
2,696,548	+				-0.8
2,696,548	+				+0.7
2,696,548	+				+0.2
2,696,548	+				-0.1
2,696,548	+				+0.5
2,696,549	-				-0.1
2,696,549	-				+0.5
2,696,549	-				-0.5
2,696,549	-				-0.4
2,696,549	-				+0.2
2,696,549	-				+1.3
2,696,565	+				+0.9
2,696,600	+				+0.4
2,696,601	-				-0.9
2,696,601	-				-0.8
2,696,601	-				+2.0
2,696,601	-				+0.7
2,696,601	-				-0.1
2,696,668	-				-0.5
2,696,680	-				+0.2
2,696,719	+				-0.1
2,696,723	-				-0.3
2,696,826	-				+0.0
2,696,828	+				+0.1
2,696,828	+				+1.2
2,696,836	+				+0.8
2,696,836	+				-1.9
2,696,837	-				+0.0
2,696,837	-				+0.5
2,696,847	+				-0.4
2,696,968	+				+1.2
2,697,238	+				-0.5
2,697,238	+				-0.9
2,697,238	+				-0.8
2,697,238	+				+1.5
2,697,238	+				-0.4
2,697,238	+				+0.9
2,697,238	+				-0.4
2,697,238	+				+2.2
2,697,238	+				+1.5
2,697,238	+				-0.4
2,697,238	+				+0.1
2,697,238	+				+0.5
2,697,238	+				-0.3
2,697,238	+				-0.1
2,697,239	-				-0.3
2,697,239	-				-0.2
2,697,239	-				-1.6
2,697,239	-				+0.2
2,697,239	-				-1.4
2,697,239	-				+0.2
2,697,239	-				-0.1
2,697,239	-				-2.0
2,697,239	-				-0.1
2,697,239	-				+0.6
2,697,239	-				+0.7
2,697,239	-				-0.3
2,697,239	-				-0.5
2,697,239	-				-0.5
2,697,239	-				+0.9
2,697,239	-				-1.0
2,697,239	-				-0.1
2,697,239	-				+0.2
2,697,239	-				+0.4
2,697,239	-				-0.6
2,697,242	+				-0.1
2,697,242	+				-0.6
2,697,242	+				+0.3
2,697,242	+				-0.3
2,697,242	+				+0.7
2,697,242	+				-1.5
2,697,242	+				+1.2
2,697,242	+				-0.2
2,697,242	+				-1.0
2,697,242	+				-0.1
2,697,243	-				-0.3
2,697,243	-				+0.9
2,697,243	-				-0.0
2,697,243	-				-0.1
2,697,243	-				-0.4
2,697,243	-				+1.0
2,697,248	+				-0.2
2,697,248	+				-0.1
2,697,249	-				+0.2
2,697,249	-				-0.4
2,697,249	-				+0.9
2,697,249	-				+0.2
2,697,249	-				-1.0
2,697,435	+		DZA65_RS12590	0.33	-0.2
2,697,436	-		DZA65_RS12590	0.33	-0.4
2,697,447	+		DZA65_RS12590	0.35	-0.2
2,697,447	+		DZA65_RS12590	0.35	+1.8
2,697,447	+		DZA65_RS12590	0.35	+0.5
2,697,448	-		DZA65_RS12590	0.35	-1.4
2,697,464	-				-1.1
2,697,464	-		DZA65_RS12590	0.37	+1.6
2,697,484	+		DZA65_RS12590	0.40	-0.7
2,697,488	+		DZA65_RS12590	0.41	-0.5
2,697,489	-		DZA65_RS12590	0.41	+1.0
2,697,489	-				-0.8
2,697,489	-		DZA65_RS12590	0.41	-0.5
2,697,489	-		DZA65_RS12590	0.41	-0.1
2,697,567	-		DZA65_RS12590	0.53	+0.1