Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,653,135	-		DZA65_RS12410	0.61	-0.8
2,653,135	-		DZA65_RS12410	0.61	+0.8
2,653,209	+		DZA65_RS12410	0.66	+0.2
2,653,209	+		DZA65_RS12410	0.66	-0.3
2,653,209	+		DZA65_RS12410	0.66	-0.0
2,653,209	+		DZA65_RS12410	0.66	+0.6
2,653,209	+		DZA65_RS12410	0.66	-1.1
2,653,209	+		DZA65_RS12410	0.66	-0.0
2,653,209	+		DZA65_RS12410	0.66	-1.0
2,653,209	+		DZA65_RS12410	0.66	-0.2
2,653,210	-		DZA65_RS12410	0.66	-0.4
2,653,210	-		DZA65_RS12410	0.66	+0.3
2,653,257	+		DZA65_RS12410	0.69	+0.5
2,653,257	+		DZA65_RS12410	0.69	+0.2
2,653,257	+		DZA65_RS12410	0.69	-0.2
2,653,257	+		DZA65_RS12410	0.69	-0.6
2,653,258	-		DZA65_RS12410	0.69	+0.8
2,653,258	-		DZA65_RS12410	0.69	+1.3
2,653,312	+		DZA65_RS12410	0.73	-0.4
2,653,312	+		DZA65_RS12410	0.73	-0.2
2,653,312	+		DZA65_RS12410	0.73	+0.9
2,653,312	+		DZA65_RS12410	0.73	-2.1
2,653,312	+		DZA65_RS12410	0.73	-0.8
2,653,312	+		DZA65_RS12410	0.73	-0.4
2,653,312	+		DZA65_RS12410	0.73	+0.8
2,653,313	-		DZA65_RS12410	0.73	-1.0
2,653,313	-		DZA65_RS12410	0.73	+0.2
2,653,342	+		DZA65_RS12410	0.75	-0.5
2,653,342	+		DZA65_RS12410	0.75	-0.2
2,653,342	+		DZA65_RS12410	0.75	-1.4
2,653,343	-		DZA65_RS12410	0.75	+0.2
2,653,343	-		DZA65_RS12410	0.75	-1.1
2,653,375	-		DZA65_RS12410	0.77	-0.2
2,653,464	+		DZA65_RS12410	0.83	-1.8
2,653,465	-		DZA65_RS12410	0.83	+2.9
2,653,473	+		DZA65_RS12410	0.84	+0.9
2,653,473	+		DZA65_RS12410	0.84	-0.9
2,653,474	-		DZA65_RS12410	0.84	-0.6
2,653,474	-		DZA65_RS12410	0.84	+0.8
2,653,474	-		DZA65_RS12410	0.84	-0.9
2,653,588	-				-0.3
2,653,588	-				+0.7
2,653,588	-				+1.4
2,653,588	-				-0.8
2,653,588	-				-1.0
2,653,588	-				-0.5
2,653,590	+				-0.3
2,653,590	+				+0.6
2,653,590	+				-1.1
2,653,590	+				+0.6
2,653,591	-				-1.8
2,653,591	-				-1.5
2,653,591	-				+0.6
2,653,667	+				+0.6
2,653,673	-				-0.7
2,653,681	-				-2.1
2,653,760	+				+0.6
2,653,761	-				-0.2
2,653,761	-				+1.4
2,653,761	-				-0.1
2,653,761	-				-1.3
2,653,761	-				+0.5
2,653,764	+				-2.7
2,653,764	+				-0.4
2,653,764	+				-1.8
2,653,764	+				-0.4
2,653,764	+				+0.3
2,653,764	+				+1.3
2,653,764	+				-1.4
2,653,765	-				+0.2
2,653,765	-				+0.1
2,653,765	-				+0.3
2,653,826	-				-1.4
2,653,829	+				-0.8
2,653,860	+				-0.4
2,653,860	+				-0.4
2,653,860	+				-0.5
2,653,860	+				-0.8
2,653,860	+				-0.1
2,653,860	+				+1.0
2,653,861	-				-0.9
2,653,861	-				+1.1
2,653,861	-				-0.5
2,653,876	+				+0.6
2,653,876	+				-1.4
2,653,877	-				+0.4
2,653,877	-				+1.0
2,653,877	-				-0.5
2,653,890	+				+0.6
2,653,890	+				+0.5
2,653,890	+				+0.2
2,653,911	+				-0.4
2,653,911	+				+1.2
2,653,912	-				-0.5
2,653,912	-				-1.1
2,653,912	-				+0.6
2,653,912	-				+1.6
2,653,934	+				-0.2
2,653,934	+				-0.9
2,653,935	-				+0.5
2,653,948	+				+1.2
2,653,948	+				+1.8
2,653,949	-				+0.5
2,653,991	+				+2.9
2,653,991	+				-1.4
2,654,019	+				+0.9
2,654,038	+				-0.2
2,654,055	+				-0.2
2,654,055	+				-1.2
2,654,056	-				-1.1
2,654,056	-				+0.8
2,654,061	+				-0.8
2,654,061	+				-0.9
2,654,061	+				+1.6
2,654,061	+				+1.3
2,654,062	-				-0.2
2,654,062	-				-0.8
2,654,062	-				+0.4
2,654,062	-				+0.5
2,654,062	-				-0.1
2,654,062	-				+0.4
2,654,062	-				-0.4
2,654,065	+				-0.6
2,654,065	+				-1.8
2,654,065	+				+0.6
2,654,066	-				+1.8
2,654,066	-				-1.4
2,654,066	-				-2.5
2,654,085	-				-0.8
2,654,117	+				-0.5
2,654,117	+				+0.1
2,654,117	+				+0.5
2,654,117	+				+0.0
2,654,117	+				-0.3
2,654,117	+				+0.2
2,654,117	+				+1.2
2,654,117	+				+0.2
2,654,117	+				-0.3
2,654,118	-				-2.6
2,654,118	-				+0.9
2,654,118	-				+1.2
2,654,118	-				+0.2
2,654,118	-				-2.4
2,654,118	-				-0.5
2,654,118	-				+0.6
2,654,118	-				+0.1
2,654,122	+				+0.9
2,654,122	+				+1.2
2,654,122	+				+1.1
2,654,122	+				-0.5
2,654,123	-				+0.4
2,654,147	+				-0.2
2,654,363	+		DZA65_RS12415	0.23	-1.1
2,654,363	+		DZA65_RS12415	0.23	-0.9
2,654,363	+		DZA65_RS12415	0.23	-0.4
2,654,363	+		DZA65_RS12415	0.23	-0.2
2,654,364	-		DZA65_RS12415	0.23	+1.2
2,654,364	-		DZA65_RS12415	0.23	+1.3
2,654,669	-		DZA65_RS12415	0.51	+0.6
2,654,669	-		DZA65_RS12415	0.51	-0.4
2,654,678	+		DZA65_RS12415	0.52	-0.5
2,654,678	+		DZA65_RS12415	0.52	+0.1
2,654,678	+		DZA65_RS12415	0.52	+0.2
2,654,678	+		DZA65_RS12415	0.52	+1.4
2,654,679	-		DZA65_RS12415	0.52	-2.1
2,654,679	-		DZA65_RS12415	0.52	+0.2
2,654,679	-		DZA65_RS12415	0.52	+0.4
2,654,679	-		DZA65_RS12415	0.52	+0.2
2,654,746	+		DZA65_RS12415	0.58	+0.5
2,654,747	-		DZA65_RS12415	0.58	-0.1
2,654,747	-		DZA65_RS12415	0.58	-1.3
2,654,747	-		DZA65_RS12415	0.58	-1.0
2,654,777	+		DZA65_RS12415	0.61	+0.7
2,654,777	+		DZA65_RS12415	0.61	-1.1
2,654,778	-		DZA65_RS12415	0.61	+0.2
2,654,778	-		DZA65_RS12415	0.61	-1.1
2,654,778	-		DZA65_RS12415	0.61	+0.4
2,654,778	-		DZA65_RS12415	0.61	+0.4
2,654,778	-		DZA65_RS12415	0.61	+1.1
2,654,813	-		DZA65_RS12415	0.64	+0.9
2,654,864	+		DZA65_RS12415	0.69	+1.0
2,654,864	+		DZA65_RS12415	0.69	+0.6
2,654,865	-		DZA65_RS12415	0.69	+0.3
2,654,867	+		DZA65_RS12415	0.69	-0.8
2,654,867	+		DZA65_RS12415	0.69	-0.8
2,654,868	-		DZA65_RS12415	0.69	-0.2
2,654,868	-		DZA65_RS12415	0.69	-0.5
2,654,868	-		DZA65_RS12415	0.69	-0.4
2,654,868	-		DZA65_RS12415	0.69	-1.3
2,654,868	-		DZA65_RS12415	0.69	+0.7
2,654,868	-		DZA65_RS12415	0.69	-0.5
2,654,899	-		DZA65_RS12415	0.72	-0.2
2,654,899	-		DZA65_RS12415	0.72	+1.0
2,654,899	-		DZA65_RS12415	0.72	+0.9
2,654,968	-		DZA65_RS12415	0.79	-1.0
2,654,968	-		DZA65_RS12415	0.79	-1.4
2,654,968	-		DZA65_RS12415	0.79	-0.0
2,655,031	+		DZA65_RS12415	0.84	-1.1
2,655,031	+		DZA65_RS12415	0.84	+0.2
2,655,031	+		DZA65_RS12415	0.84	-0.4
2,655,031	+		DZA65_RS12415	0.84	+0.7
2,655,031	+		DZA65_RS12415	0.84	+0.2
2,655,031	+		DZA65_RS12415	0.84	-0.2
2,655,031	+		DZA65_RS12415	0.84	+0.2
2,655,031	+		DZA65_RS12415	0.84	+1.8
2,655,032	-		DZA65_RS12415	0.84	+0.4
2,655,035	+		DZA65_RS12415	0.85	-0.7
2,655,089	-		DZA65_RS12415	0.90	+0.9
2,655,089	-		DZA65_RS12415	0.90	-0.5
2,655,200	+				+0.4
2,655,204	+				-0.3
2,655,205	-				-0.2
2,655,257	-				-1.8
2,655,274	+				+0.3
2,655,293	-				+0.5
2,655,293	-				-1.1
2,655,311	-				+1.0
2,655,323	+				-0.2
2,655,324	-				+0.2
2,655,349	+				-0.8
2,655,350	-				-0.5
2,655,350	-				+0.1
2,655,350	-				+0.4
2,655,350	-				-0.0
2,655,350	-				-0.6
2,655,350	-				+0.2
2,655,351	+				-0.8
2,655,351	+				+0.2
2,655,351	+				-1.2
2,655,351	+				-0.2
2,655,351	+				-1.5
2,655,351	+				+0.3
2,655,351	+				-2.1
2,655,351	+				-0.7
2,655,351	+				+0.2
2,655,351	+				-1.2
2,655,351	+				+0.6
2,655,352	-				+0.5
2,655,352	-				+0.2
2,655,352	-				+0.2
2,655,352	-				-0.5
2,655,352	-				+0.0
2,655,352	-				+0.8
2,655,352	-				+0.6
2,655,352	-				+0.4
2,655,400	-				+1.5
2,655,403	-				+1.5
2,655,428	+				-0.7
2,655,429	-				-0.3
2,655,454	+				+2.5
2,655,454	+				+2.2
2,655,495	-		DZA65_RS12420	0.27	-0.8
2,655,495	-		DZA65_RS12420	0.27	-0.2
2,655,527	-		DZA65_RS12420	0.41	-0.3
2,655,654	+				+1.4
2,655,654	+				-0.1
2,655,654	+				-1.0
2,655,654	+				-1.4
2,655,654	+				+0.5
2,655,654	+				-0.0
2,655,654	+				+0.2
2,655,654	+				+0.0
2,655,654	+				+0.1
2,655,654	+				+0.7
2,655,654	+				-0.7
2,655,654	+				-1.6
2,655,655	-				-1.1
2,655,655	-				+0.0
2,655,655	-				-1.9
2,655,655	-				+0.5
2,655,655	-				+1.1
2,655,655	-				+0.2
2,655,655	-				-1.4
2,655,655	-				+0.9
2,655,655	-				-1.1
2,655,661	+				+1.2
2,655,661	+				-1.4
2,655,661	+				-0.5
2,655,661	+				+0.6
2,655,661	+				+0.9
2,655,662	-				-1.4
2,655,662	-				+0.0
2,655,708	+				+0.2
2,655,779	+				-0.1
2,655,780	-				-0.0
2,655,819	+				-0.8
2,655,875	+				+0.6
2,655,876	-				+0.1
2,655,876	-				+1.1
2,655,881	+				-0.1
2,655,882	-				-0.2
2,655,882	-				+0.3
2,655,882	-				-0.4
2,655,897	+				+0.3
2,655,898	-				+0.2
2,655,898	-				+0.6
2,655,898	-				+0.5
2,655,898	-				+0.3
2,655,898	-				+1.1
2,655,921	-				-0.6
2,655,921	-				+0.6
2,655,969	-				+0.2
2,656,098	-				+0.6
2,656,122	+				-1.1
2,656,169	-		DZA65_RS12425	0.10	+0.3