Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12360

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,638,833	+				+0.7
2,638,862	+				+1.2
2,638,862	+				-1.1
2,638,862	+				-0.5
2,638,862	+				-0.6
2,638,862	+				-2.4
2,638,863	-				-0.2
2,638,863	-				+0.3
2,638,863	-				-3.1
2,638,863	-				+1.3
2,638,863	-				-0.1
2,638,863	-				+0.0
2,638,863	-				-1.1
2,638,863	-				+0.2
2,639,212	+		DZA65_RS12355	0.41	-0.1
2,639,333	-		DZA65_RS12355	0.54	-0.7
2,639,333	-		DZA65_RS12355	0.54	+0.2
2,639,657	-				+1.3
2,639,783	+				-0.3
2,639,783	+				+1.1
2,639,784	-				+0.2
2,639,854	-		DZA65_RS12360	0.13	+0.7
2,639,891	+		DZA65_RS12360	0.16	-0.3
2,639,891	+		DZA65_RS12360	0.16	+0.7
2,639,891	+		DZA65_RS12360	0.16	-1.3
2,639,891	+		DZA65_RS12360	0.16	+1.1
2,639,892	-		DZA65_RS12360	0.16	-0.4
2,639,892	-		DZA65_RS12360	0.16	-0.1
2,639,895	+		DZA65_RS12360	0.17	+0.2
2,639,896	-		DZA65_RS12360	0.17	+0.1
2,639,936	+		DZA65_RS12360	0.21	+0.2
2,639,936	+		DZA65_RS12360	0.21	+0.7
2,639,940	+		DZA65_RS12360	0.21	+0.4
2,639,940	+		DZA65_RS12360	0.21	-0.6
2,639,940	+		DZA65_RS12360	0.21	+0.4
2,639,940	+		DZA65_RS12360	0.21	-0.8
2,639,941	-		DZA65_RS12360	0.21	+0.5
2,640,088	+		DZA65_RS12360	0.36	-0.2
2,640,088	+		DZA65_RS12360	0.36	-1.2
2,640,157	+		DZA65_RS12360	0.43	-1.1
2,640,157	+		DZA65_RS12360	0.43	+1.6
2,640,158	-		DZA65_RS12360	0.43	+1.5
2,640,158	-		DZA65_RS12360	0.43	+0.2
2,640,274	+		DZA65_RS12360	0.55	-1.4
2,640,275	-		DZA65_RS12360	0.55	-1.1
2,640,445	+		DZA65_RS12360	0.72	+0.5
2,640,445	+		DZA65_RS12360	0.72	-0.4
2,640,445	+		DZA65_RS12360	0.72	-1.1
2,640,446	-		DZA65_RS12360	0.73	-0.2
2,640,490	+		DZA65_RS12360	0.77	+0.5
2,640,490	+		DZA65_RS12360	0.77	-0.2
2,640,490	+		DZA65_RS12360	0.77	-0.1
2,640,490	+		DZA65_RS12360	0.77	+0.5
2,640,490	+		DZA65_RS12360	0.77	-0.4
2,640,490	+		DZA65_RS12360	0.77	+0.4
2,640,490	+		DZA65_RS12360	0.77	+0.9
2,640,490	+		DZA65_RS12360	0.77	+0.9
2,640,491	-		DZA65_RS12360	0.77	-0.2
2,640,491	-		DZA65_RS12360	0.77	+0.5
2,640,491	-		DZA65_RS12360	0.77	-2.0
2,640,491	-		DZA65_RS12360	0.77	-0.8
2,640,491	-		DZA65_RS12360	0.77	+0.2
2,640,491	-		DZA65_RS12360	0.77	+1.5
2,640,491	-		DZA65_RS12360	0.77	+0.6
2,640,491	-		DZA65_RS12360	0.77	-0.8
2,640,491	-		DZA65_RS12360	0.77	+0.6
2,640,491	-		DZA65_RS12360	0.77	+0.2
2,640,491	-		DZA65_RS12360	0.77	+1.9
2,640,496	+		DZA65_RS12360	0.78	+2.9
2,640,496	+		DZA65_RS12360	0.78	+0.0
2,640,496	+		DZA65_RS12360	0.78	-0.6
2,640,496	+		DZA65_RS12360	0.78	-1.1
2,640,496	+		DZA65_RS12360	0.78	+1.1
2,640,497	-		DZA65_RS12360	0.78	+2.9
2,640,497	-		DZA65_RS12360	0.78	-0.8
2,640,497	-		DZA65_RS12360	0.78	-0.5
2,640,497	-		DZA65_RS12360	0.78	-0.8
2,640,497	-		DZA65_RS12360	0.78	-0.8
2,640,721	+				-0.9
2,640,721	+				-0.5
2,640,721	+				-0.8
2,640,721	+				+1.4
2,640,722	-				-2.4
2,640,727	+				-0.8
2,640,727	+				-0.1
2,640,727	+				+0.2
2,640,727	+				+1.9
2,640,727	+				+0.8
2,640,727	+				-1.4
2,640,727	+				-0.1
2,640,727	+				-1.6
2,640,728	-				-0.1
2,640,728	-				-1.1
2,640,728	-				+0.9
2,640,728	-				+2.2
2,640,728	-				+0.0
2,640,728	-				-0.7
2,640,728	-				-0.9
2,640,729	+				-0.8
2,640,729	+				-2.1
2,640,729	+				-2.1
2,640,730	-				-0.2
2,640,730	-				-0.8
2,640,730	-				+0.1
2,640,730	-				+0.6
2,640,730	-				-1.1
2,640,868	+				-0.2
2,640,868	+				+0.9
2,640,868	+				+0.3
2,640,868	+				+1.5
2,640,869	-				-1.9
2,640,869	-				-0.8
2,640,869	-				-2.1
2,640,869	-				+0.9
2,640,869	-				-0.7
2,640,869	-				-2.6
2,640,872	+				+0.2
2,640,872	+				-0.4
2,640,873	-				-0.1
2,641,019	-		DZA65_RS12365	0.14	-1.0
2,641,052	+		DZA65_RS12365	0.17	-0.2
2,641,147	+		DZA65_RS12365	0.23	+0.2
2,641,147	+		DZA65_RS12365	0.23	-1.6
2,641,147	+		DZA65_RS12365	0.23	+1.2
2,641,148	-		DZA65_RS12365	0.23	-0.2
2,641,162	+		DZA65_RS12365	0.24	+1.4
2,641,162	+		DZA65_RS12365	0.24	+1.2
2,641,162	+		DZA65_RS12365	0.24	+0.8
2,641,162	+		DZA65_RS12365	0.24	+1.0
2,641,162	+		DZA65_RS12365	0.24	-0.6
2,641,163	-		DZA65_RS12365	0.24	-0.2
2,641,163	-		DZA65_RS12365	0.24	-1.4
2,641,163	-		DZA65_RS12365	0.24	+0.6
2,641,188	-		DZA65_RS12365	0.25	-0.6
2,641,228	+				-2.1
2,641,229	-		DZA65_RS12365	0.28	-1.8
2,641,229	-		DZA65_RS12365	0.28	-2.4
2,641,265	+		DZA65_RS12365	0.30	-0.9
2,641,265	+		DZA65_RS12365	0.30	+0.0
2,641,265	+		DZA65_RS12365	0.30	-0.5
2,641,265	+		DZA65_RS12365	0.30	-0.2
2,641,265	+		DZA65_RS12365	0.30	-0.7
2,641,265	+		DZA65_RS12365	0.30	+0.8
2,641,265	+		DZA65_RS12365	0.30	+0.2
2,641,265	+		DZA65_RS12365	0.30	-0.4
2,641,265	+		DZA65_RS12365	0.30	+0.8
2,641,265	+		DZA65_RS12365	0.30	-1.0
2,641,265	+		DZA65_RS12365	0.30	+0.6
2,641,266	-		DZA65_RS12365	0.30	-0.6
2,641,266	-		DZA65_RS12365	0.30	+0.2
2,641,266	-		DZA65_RS12365	0.30	-0.8
2,641,266	-		DZA65_RS12365	0.30	+0.4
2,641,266	-		DZA65_RS12365	0.30	+0.2
2,641,266	-		DZA65_RS12365	0.30	-0.4
2,641,267	+		DZA65_RS12365	0.30	+0.9
2,641,267	+		DZA65_RS12365	0.30	+1.3
2,641,267	+		DZA65_RS12365	0.30	+0.3
2,641,267	+		DZA65_RS12365	0.30	-0.0
2,641,267	+		DZA65_RS12365	0.30	+0.2
2,641,267	+		DZA65_RS12365	0.30	+0.3
2,641,267	+		DZA65_RS12365	0.30	-0.5
2,641,267	+		DZA65_RS12365	0.30	-1.4
2,641,267	+		DZA65_RS12365	0.30	+0.2
2,641,267	+		DZA65_RS12365	0.30	+0.5
2,641,267	+		DZA65_RS12365	0.30	-0.8
2,641,267	+		DZA65_RS12365	0.30	+0.8
2,641,267	+		DZA65_RS12365	0.30	-1.4
2,641,267	+		DZA65_RS12365	0.30	-0.8
2,641,267	+		DZA65_RS12365	0.30	-0.3
2,641,267	+		DZA65_RS12365	0.30	-0.1
2,641,267	+		DZA65_RS12365	0.30	-0.3
2,641,267	+		DZA65_RS12365	0.30	+0.8
2,641,267	+		DZA65_RS12365	0.30	+0.2
2,641,268	-		DZA65_RS12365	0.30	+0.2
2,641,268	-		DZA65_RS12365	0.30	-0.3
2,641,268	-		DZA65_RS12365	0.30	-0.8
2,641,268	-		DZA65_RS12365	0.30	-0.8
2,641,268	-		DZA65_RS12365	0.30	+1.4
2,641,268	-		DZA65_RS12365	0.30	+0.5
2,641,268	-		DZA65_RS12365	0.30	-0.5
2,641,268	-		DZA65_RS12365	0.30	+0.2
2,641,268	-		DZA65_RS12365	0.30	-0.3
2,641,268	-		DZA65_RS12365	0.30	+0.4
2,641,268	-		DZA65_RS12365	0.30	-0.4
2,641,268	-		DZA65_RS12365	0.30	+3.2
2,641,268	-		DZA65_RS12365	0.30	-0.4
2,641,268	-		DZA65_RS12365	0.30	+0.2
2,641,268	-		DZA65_RS12365	0.30	+0.2
2,641,268	-		DZA65_RS12365	0.30	+0.0
2,641,268	-		DZA65_RS12365	0.30	-0.8
2,641,430	-		DZA65_RS12365	0.40	+0.2
2,641,435	+		DZA65_RS12365	0.41	+0.2
2,641,448	+		DZA65_RS12365	0.42	+0.5
2,641,482	-		DZA65_RS12365	0.44	-0.2
2,641,511	-		DZA65_RS12365	0.45	+1.4