Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12185

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,602,907	+				-1.4
2,602,907	+				+1.6
2,602,907	+				-0.4
2,602,908	-				+0.1
2,602,908	-				+0.4
2,602,908	-				+0.6
2,602,951	-				+0.2
2,602,975	+				+1.1
2,602,976	-				+0.5
2,602,976	-				+1.0
2,602,976	-				-1.8
2,602,976	-				+1.7
2,602,976	-				-0.8
2,602,999	+				+0.2
2,602,999	+				-0.1
2,603,000	-				+0.3
2,603,000	-				-0.2
2,603,000	-				+1.0
2,603,000	-				+0.5
2,603,007	+				-0.5
2,603,008	-				-0.5
2,603,015	-				+0.2
2,603,031	+				+0.4
2,603,031	+				-0.2
2,603,032	-				-0.7
2,603,065	+				+1.3
2,603,065	+				+0.8
2,603,140	+		DZA65_RS12175	0.20	+0.2
2,603,187	-		DZA65_RS12175	0.32	+0.2
2,603,189	+		DZA65_RS12175	0.33	+0.3
2,603,189	+		DZA65_RS12175	0.33	-0.7
2,603,190	-		DZA65_RS12175	0.33	-0.3
2,603,190	-		DZA65_RS12175	0.33	-0.8
2,603,361	-		DZA65_RS12175	0.77	-0.1
2,603,473	+				+1.2
2,603,473	+				-0.1
2,603,473	+				-0.8
2,603,473	+				-0.8
2,603,473	+				+0.5
2,603,473	+				+2.2
2,603,474	-				-0.8
2,603,474	-				+0.2
2,603,509	-				-0.1
2,603,516	+				+0.3
2,603,520	+				+1.9
2,603,520	+				-0.5
2,603,520	+				-0.4
2,603,520	+				+0.4
2,603,520	+				+0.2
2,603,520	+				+0.1
2,603,520	+				-1.7
2,603,520	+				-0.3
2,603,521	-				-0.3
2,603,521	-				+0.4
2,603,521	-				+0.9
2,603,521	-				+1.7
2,603,521	-				+0.2
2,603,521	-				-0.6
2,603,521	-				-0.9
2,603,521	-				-0.2
2,603,616	-		DZA65_RS12180	0.43	+0.3
2,603,616	-		DZA65_RS12180	0.43	+0.4
2,603,616	-		DZA65_RS12180	0.43	-0.3
2,603,704	-		DZA65_RS12180	0.86	-1.1
2,603,717	+				-0.2
2,603,718	-				-1.6
2,603,735	+				-0.1
2,603,735	+				-0.1
2,603,735	+				-0.3
2,603,736	-				-0.8
2,603,736	-				-0.1
2,603,736	-				+0.9
2,603,736	-				-0.4
2,603,736	-				-0.5
2,603,736	-				-0.1
2,603,736	-				+0.5
2,603,739	+				-1.1
2,603,739	+				-0.8
2,603,739	+				-0.1
2,603,739	+				-0.8
2,603,740	-				+0.7
2,603,740	-				-0.3
2,603,740	-				-1.4
2,603,740	-				-0.8
2,603,740	-				+1.1
2,603,740	-				-0.4
2,603,740	-				-0.2
2,603,740	-				-2.6
2,603,750	-				-2.8
2,603,796	-				-0.3
2,603,814	+				-1.8
2,603,814	+				-1.8
2,603,814	+				-0.1
2,603,815	-				+0.6
2,603,820	-				+0.8
2,603,881	-				-0.5
2,603,903	+				+0.2
2,603,903	+				-0.8
2,603,903	+				+0.3
2,603,903	+				+1.5
2,603,904	-				-1.1
2,603,904	-				+1.5
2,603,904	-				-0.5
2,603,904	-				+1.3
2,603,935	-				+0.0
2,603,935	-				+0.2
2,603,945	+				-0.1
2,603,945	+				-1.0
2,603,992	-				+2.8
2,604,053	-		DZA65_RS12185	0.15	-0.6
2,604,076	-		DZA65_RS12185	0.18	-0.1
2,604,347	+		DZA65_RS12185	0.45	+2.0
2,604,348	-		DZA65_RS12185	0.45	-0.8
2,604,348	-		DZA65_RS12185	0.45	+0.3
2,604,348	-		DZA65_RS12185	0.45	-0.1
2,604,510	+		DZA65_RS12185	0.62	-0.1
2,604,510	+		DZA65_RS12185	0.62	-0.1
2,604,517	+		DZA65_RS12185	0.62	-1.2
2,604,518	-		DZA65_RS12185	0.63	+1.0
2,604,560	+		DZA65_RS12185	0.67	+1.5
2,604,591	-		DZA65_RS12185	0.70	+0.2
2,604,711	+		DZA65_RS12185	0.82	+0.2
2,604,711	+		DZA65_RS12185	0.82	+0.1
2,604,711	+		DZA65_RS12185	0.82	-1.4
2,604,711	+		DZA65_RS12185	0.82	+0.1
2,604,712	-		DZA65_RS12185	0.82	-1.1
2,604,712	-		DZA65_RS12185	0.82	-0.1
2,604,743	-				-1.8
2,604,743	-		DZA65_RS12185	0.85	-1.2
2,604,748	-		DZA65_RS12185	0.86	+0.7
2,604,787	+				+1.0
2,604,799	+				-0.4
2,604,799	+				-0.6
2,604,799	+				-0.4
2,604,799	+				-0.2
2,604,799	+				+1.2
2,604,799	+				-1.0
2,604,799	+				-0.6
2,604,800	-				+1.9
2,604,800	-				-0.3
2,604,800	-				-0.0
2,604,800	-				-0.6
2,604,800	-				-1.6
2,604,800	-				+1.4
2,604,800	-				+0.7
2,604,800	-				+0.4
2,604,802	-				-0.3
2,604,871	-				-0.6
2,604,877	+				+0.4
2,604,877	+				-1.1
2,604,890	-				+0.7
2,604,910	-				+2.3
2,604,910	-				-1.1
2,604,935	+				-0.2
2,604,936	-				+0.6
2,604,940	+				-2.4
2,604,940	+				-0.6
2,604,940	+				+2.8
2,604,941	-				+0.2
2,604,941	-				+1.9
2,604,941	-				+0.6
2,604,941	-				-2.1
2,605,006	+				+1.8
2,605,006	+				+0.1
2,605,017	+				+0.6
2,605,017	+				+1.6
2,605,054	+				+0.4
2,605,055	-				-0.2
2,605,061	+				+0.5
2,605,061	+				+0.3
2,605,061	+				-1.2
2,605,061	+				-0.2
2,605,062	-				+0.2
2,605,062	-				-0.5
2,605,141	+				-0.3
2,605,141	+				+0.9
2,605,142	-				-0.3
2,605,142	-				-1.4
2,605,142	-				-0.0
2,605,218	+				+0.5
2,605,218	+				+0.2
2,605,218	+				+0.3
2,605,219	-				+0.1
2,605,219	-				+0.2
2,605,219	-				-0.1
2,605,219	-				+1.0
2,605,219	-				+0.3
2,605,219	-				-0.6
2,605,253	+				+0.2
2,605,253	+				+1.1
2,605,253	+				-2.4
2,605,254	-				+0.4
2,605,254	-				-1.4
2,605,291	+				-2.1
2,605,291	+				+0.2
2,605,428	+		DZA65_RS12190	0.26	-0.4
2,605,428	+		DZA65_RS12190	0.26	-0.2
2,605,429	-		DZA65_RS12190	0.26	+0.5
2,605,429	-		DZA65_RS12190	0.26	-1.2
2,605,429	-		DZA65_RS12190	0.26	-1.3
2,605,479	-		DZA65_RS12190	0.34	+0.2
2,605,525	+		DZA65_RS12190	0.41	-1.3
2,605,526	-		DZA65_RS12190	0.41	+0.3
2,605,526	-		DZA65_RS12190	0.41	+0.2
2,605,526	-		DZA65_RS12190	0.41	-1.4
2,605,526	-		DZA65_RS12190	0.41	+1.2
2,605,526	-		DZA65_RS12190	0.41	-0.3
2,605,526	-		DZA65_RS12190	0.41	+0.9
2,605,592	+		DZA65_RS12190	0.51	-0.7
2,605,592	+		DZA65_RS12190	0.51	-2.4
2,605,592	+				-2.8
2,605,593	-				-0.3
2,605,593	-		DZA65_RS12190	0.51	-1.3
2,605,593	-		DZA65_RS12190	0.51	+0.1
2,605,595	-		DZA65_RS12190	0.52	+1.2
2,605,595	-		DZA65_RS12190	0.52	-1.1
2,605,645	+		DZA65_RS12190	0.60	+0.7
2,605,645	+		DZA65_RS12190	0.60	-0.1
2,605,646	-		DZA65_RS12190	0.60	-0.1
2,605,646	-		DZA65_RS12190	0.60	-0.6
2,605,646	-		DZA65_RS12190	0.60	+0.0
2,605,646	-		DZA65_RS12190	0.60	-0.7
2,605,646	-		DZA65_RS12190	0.60	-0.4
2,605,646	-		DZA65_RS12190	0.60	-0.6
2,605,646	-		DZA65_RS12190	0.60	-0.8
2,605,646	-		DZA65_RS12190	0.60	+0.6
2,605,649	+		DZA65_RS12190	0.60	-1.1
2,605,649	+		DZA65_RS12190	0.60	-1.6
2,605,649	+		DZA65_RS12190	0.60	+0.5
2,605,649	+		DZA65_RS12190	0.60	+0.4
2,605,649	+		DZA65_RS12190	0.60	+1.8
2,605,649	+		DZA65_RS12190	0.60	-0.8
2,605,649	+		DZA65_RS12190	0.60	+0.4
2,605,649	+		DZA65_RS12190	0.60	-0.4
2,605,649	+		DZA65_RS12190	0.60	-0.8
2,605,650	-		DZA65_RS12190	0.60	-1.7
2,605,650	-		DZA65_RS12190	0.60	+0.6
2,605,650	-		DZA65_RS12190	0.60	+0.4
2,605,650	-		DZA65_RS12190	0.60	-0.8
2,605,650	-		DZA65_RS12190	0.60	+0.8
2,605,650	-		DZA65_RS12190	0.60	+2.8
2,605,650	-		DZA65_RS12190	0.60	+0.8
2,605,650	-		DZA65_RS12190	0.60	+0.1
2,605,650	-		DZA65_RS12190	0.60	-0.3
2,605,650	-		DZA65_RS12190	0.60	+1.2
2,605,727	+		DZA65_RS12190	0.72	-0.2
2,605,727	+		DZA65_RS12190	0.72	+0.8
2,605,727	+		DZA65_RS12190	0.72	-0.0
2,605,728	-		DZA65_RS12190	0.72	-0.8
2,605,728	-		DZA65_RS12190	0.72	-0.7
2,605,728	-		DZA65_RS12190	0.72	-1.3
2,605,728	-		DZA65_RS12190	0.72	-2.1
2,605,746	+		DZA65_RS12190	0.75	+1.0
2,605,747	-		DZA65_RS12190	0.75	+1.2
2,605,747	-		DZA65_RS12190	0.75	-0.5
2,605,828	-		DZA65_RS12190	0.88	-1.8
2,605,859	+				-0.3
2,605,860	-				-1.4