Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11830

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,522,345	-				-1.8
2,522,360	-				+1.0
2,522,360	-				+1.0
2,522,397	-				+0.9
2,522,490	-				+1.0
2,522,495	-				-0.4
2,522,567	+				-0.2
2,522,567	+				-0.2
2,522,568	-				-2.7
2,522,568	-				-0.4
2,522,605	+				-1.4
2,522,605	+				+1.2
2,522,605	+				+0.5
2,522,605	+				+2.2
2,522,605	+				-0.8
2,522,606	-				+0.5
2,522,659	+				-0.1
2,522,809	+		DZA65_RS11825	0.59	-0.1
2,522,810	-		DZA65_RS11825	0.60	-0.6
2,522,846	-		DZA65_RS11825	0.72	+0.2
2,522,846	-		DZA65_RS11825	0.72	-0.4
2,522,920	+				+1.2
2,522,920	+				-0.0
2,522,920	+				-1.1
2,522,921	-				-2.2
2,522,921	-				-0.0
2,522,921	-				-0.0
2,522,931	-				+0.2
2,522,931	-				+0.3
2,522,931	-				+0.6
2,522,941	-				-1.4
2,522,941	-				-0.1
2,522,944	+				-0.3
2,522,944	+				+0.7
2,522,944	+				+0.5
2,522,944	+				-0.6
2,522,967	+				-1.7
2,522,967	+				+0.7
2,522,968	-				+0.1
2,522,968	-				+0.3
2,522,968	-				-1.3
2,522,968	-				-1.2
2,522,968	-				+1.2
2,523,031	+				-1.2
2,523,031	+				+1.2
2,523,031	+				+0.0
2,523,031	+				+0.4
2,523,032	-				-0.5
2,523,032	-				-0.2
2,523,032	-				+1.5
2,523,132	+				-1.8
2,523,133	-				+0.7
2,523,164	+				+0.2
2,523,164	+				-0.4
2,523,165	-				-0.8
2,523,165	-				-3.0
2,523,210	+		DZA65_RS11830	0.15	-0.7
2,523,210	+		DZA65_RS11830	0.15	-0.6
2,523,210	+		DZA65_RS11830	0.15	+0.2
2,523,211	-		DZA65_RS11830	0.15	-0.5
2,523,211	-		DZA65_RS11830	0.15	+1.2
2,523,378	+		DZA65_RS11830	0.36	-0.2
2,523,488	+		DZA65_RS11830	0.50	+0.7
2,523,488	+		DZA65_RS11830	0.50	-2.2
2,523,488	+		DZA65_RS11830	0.50	-0.8
2,523,489	-		DZA65_RS11830	0.50	-1.9
2,523,489	-		DZA65_RS11830	0.50	-1.4
2,523,504	-		DZA65_RS11830	0.52	-0.5
2,523,520	-		DZA65_RS11830	0.54	-0.8
2,523,527	+		DZA65_RS11830	0.55	+0.2
2,523,527	+		DZA65_RS11830	0.55	-0.5
2,523,527	+		DZA65_RS11830	0.55	+0.3
2,523,528	-		DZA65_RS11830	0.55	-2.4
2,523,677	+		DZA65_RS11830	0.74	-0.3
2,523,678	-		DZA65_RS11830	0.74	-0.8
2,523,707	+		DZA65_RS11830	0.77	-0.5
2,523,707	+		DZA65_RS11830	0.77	-0.2
2,523,708	-		DZA65_RS11830	0.78	+0.2
2,523,784	-		DZA65_RS11830	0.87	-1.1
2,523,809	-				-0.8
2,523,864	+				-1.2
2,523,865	-				-0.3
2,523,865	-				-0.4
2,523,865	-				-0.0
2,523,869	-				-0.3
2,523,948	-				-1.1
2,523,966	-				+0.5
2,523,984	+				-1.3
2,523,984	+				-0.6
2,523,984	+				-0.8
2,523,984	+				+0.5
2,523,984	+				-0.6
2,523,984	+				+1.3
2,523,985	-				+1.2
2,523,985	-				-0.1
2,523,985	-				-0.6
2,523,985	-				+1.1
2,523,987	-				+0.9
2,523,987	-				-1.7
2,523,987	-				-2.4
2,524,006	+				+1.0
2,524,006	+				-1.1
2,524,006	+				+0.0
2,524,006	+				+0.5
2,524,007	-				+1.6
2,524,007	-				-0.3
2,524,035	+				+0.4
2,524,039	-				-2.2
2,524,039	-				-0.6
2,524,045	-				+1.2
2,524,049	+				-0.4
2,524,131	+				+0.1
2,524,131	+				+0.2
2,524,132	-				+0.5
2,524,132	-				+0.3
2,524,133	+				-0.1
2,524,133	+				+2.7
2,524,133	+				-0.2
2,524,133	+				-0.6
2,524,134	-				-0.6
2,524,134	-				-1.7
2,524,134	-				+1.3
2,524,163	-				-0.6
2,524,163	-				-0.8
2,524,163	-				-0.5
2,524,163	-				+0.2
2,524,171	+				+0.4
2,524,171	+				-0.4
2,524,171	+				-0.8
2,524,172	-				-0.1
2,524,172	-				+0.9
2,524,172	-				-0.1
2,524,172	-				+2.0
2,524,172	-				+0.4
2,524,172	-				-1.4
2,524,172	-				-1.1
2,524,285	+		DZA65_RS11835	0.16	+0.4
2,524,285	+		DZA65_RS11835	0.16	-1.8
2,524,286	-		DZA65_RS11835	0.16	-1.1
2,524,296	+		DZA65_RS11835	0.17	+0.2
2,524,296	+		DZA65_RS11835	0.17	-0.7
2,524,296	+		DZA65_RS11835	0.17	+1.0
2,524,296	+		DZA65_RS11835	0.17	-0.7
2,524,296	+		DZA65_RS11835	0.17	+0.2
2,524,296	+		DZA65_RS11835	0.17	+1.0
2,524,296	+		DZA65_RS11835	0.17	-0.8
2,524,296	+		DZA65_RS11835	0.17	-0.4
2,524,296	+		DZA65_RS11835	0.17	-1.4
2,524,296	+		DZA65_RS11835	0.17	-0.7
2,524,296	+		DZA65_RS11835	0.17	+0.8
2,524,296	+		DZA65_RS11835	0.17	-0.8
2,524,296	+				+3.0
2,524,296	+				+1.2
2,524,297	-		DZA65_RS11835	0.17	-0.5
2,524,297	-		DZA65_RS11835	0.17	+0.6
2,524,297	-		DZA65_RS11835	0.17	+1.5
2,524,297	-		DZA65_RS11835	0.17	+0.2
2,524,297	-		DZA65_RS11835	0.17	+1.7
2,524,323	+		DZA65_RS11835	0.19	-0.6
2,524,340	+		DZA65_RS11835	0.21	-0.8
2,524,340	+		DZA65_RS11835	0.21	-0.7
2,524,340	+		DZA65_RS11835	0.21	-0.7
2,524,341	-		DZA65_RS11835	0.21	+0.8
2,524,389	+		DZA65_RS11835	0.25	-0.3
2,524,389	+		DZA65_RS11835	0.25	-0.3
2,524,389	+		DZA65_RS11835	0.25	+0.2
2,524,389	+		DZA65_RS11835	0.25	+0.2
2,524,389	+		DZA65_RS11835	0.25	+1.2
2,524,389	+		DZA65_RS11835	0.25	-1.0
2,524,389	+		DZA65_RS11835	0.25	-1.2
2,524,389	+		DZA65_RS11835	0.25	-0.7
2,524,389	+		DZA65_RS11835	0.25	+0.2
2,524,389	+		DZA65_RS11835	0.25	-1.4
2,524,390	-		DZA65_RS11835	0.25	-0.5
2,524,390	-		DZA65_RS11835	0.25	+1.1
2,524,390	-		DZA65_RS11835	0.25	-0.7
2,524,390	-		DZA65_RS11835	0.25	-0.7
2,524,390	-		DZA65_RS11835	0.25	+0.2
2,524,390	-		DZA65_RS11835	0.25	-0.4
2,524,390	-		DZA65_RS11835	0.25	-1.3
2,524,503	+		DZA65_RS11835	0.35	-0.4
2,524,504	-		DZA65_RS11835	0.35	-1.5
2,524,504	-		DZA65_RS11835	0.35	+0.2
2,524,504	-		DZA65_RS11835	0.35	+0.8
2,524,577	-		DZA65_RS11835	0.41	-0.6
2,524,577	-		DZA65_RS11835	0.41	+0.5
2,524,582	+		DZA65_RS11835	0.42	+0.2
2,524,583	-		DZA65_RS11835	0.42	+0.2
2,524,583	-		DZA65_RS11835	0.42	-0.1
2,524,583	-		DZA65_RS11835	0.42	-1.1
2,524,583	-		DZA65_RS11835	0.42	-0.3
2,524,583	-		DZA65_RS11835	0.42	+0.3
2,524,583	-		DZA65_RS11835	0.42	-0.8
2,524,612	+		DZA65_RS11835	0.44	+1.4
2,524,612	+				+0.2
2,524,612	+		DZA65_RS11835	0.44	-0.6
2,524,613	-		DZA65_RS11835	0.44	-0.6
2,524,613	-		DZA65_RS11835	0.44	-0.1
2,524,655	+		DZA65_RS11835	0.48	-1.4
2,524,660	+		DZA65_RS11835	0.48	-0.3
2,524,660	+		DZA65_RS11835	0.48	+0.4
2,524,660	+		DZA65_RS11835	0.48	-1.8
2,524,660	+		DZA65_RS11835	0.48	-1.2
2,524,660	+		DZA65_RS11835	0.48	-0.3
2,524,661	-		DZA65_RS11835	0.48	-0.9
2,524,684	+		DZA65_RS11835	0.50	+1.2
2,524,684	+		DZA65_RS11835	0.50	+0.3
2,524,684	+		DZA65_RS11835	0.50	-1.0
2,524,684	+		DZA65_RS11835	0.50	-0.4
2,524,684	+		DZA65_RS11835	0.50	+0.0
2,524,685	-		DZA65_RS11835	0.50	+0.2
2,524,685	-		DZA65_RS11835	0.50	-0.4
2,524,717	+		DZA65_RS11835	0.53	-0.3
2,524,717	+		DZA65_RS11835	0.53	-0.4
2,524,717	+				+1.2
2,524,718	-		DZA65_RS11835	0.53	-0.4
2,524,775	-		DZA65_RS11835	0.58	-0.9
2,524,775	-		DZA65_RS11835	0.58	-1.3
2,524,779	+				+0.2
2,524,780	-		DZA65_RS11835	0.59	-0.6
2,524,780	-		DZA65_RS11835	0.59	+0.2
2,524,780	-		DZA65_RS11835	0.59	+1.0
2,524,780	-		DZA65_RS11835	0.59	+0.2
2,524,879	+		DZA65_RS11835	0.67	-0.1
2,524,880	-		DZA65_RS11835	0.67	-0.3
2,524,885	-		DZA65_RS11835	0.68	+1.0