Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10890

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,303,877	+		DZA65_RS10880	0.71	-2.0
2,303,877	+		DZA65_RS10880	0.71	+0.4
2,303,877	+		DZA65_RS10880	0.71	+0.3
2,303,877	+		DZA65_RS10880	0.71	-0.2
2,303,877	+		DZA65_RS10880	0.71	+0.3
2,303,877	+		DZA65_RS10880	0.71	+0.2
2,303,877	+		DZA65_RS10880	0.71	-0.4
2,303,878	-		DZA65_RS10880	0.71	+0.8
2,303,878	-		DZA65_RS10880	0.71	-0.6
2,303,878	-		DZA65_RS10880	0.71	-0.8
2,303,878	-		DZA65_RS10880	0.71	-0.1
2,303,907	+		DZA65_RS10880	0.74	+1.0
2,303,908	-		DZA65_RS10880	0.74	-0.2
2,303,908	-				+0.9
2,303,908	-		DZA65_RS10880	0.74	-0.4
2,303,940	+		DZA65_RS10880	0.77	+0.2
2,303,941	-		DZA65_RS10880	0.77	-1.0
2,303,941	-		DZA65_RS10880	0.77	+1.5
2,303,941	-		DZA65_RS10880	0.77	-0.6
2,304,058	+		DZA65_RS10880	0.89	+2.2
2,304,058	+		DZA65_RS10880	0.89	-0.5
2,304,058	+		DZA65_RS10880	0.89	+0.7
2,304,059	-		DZA65_RS10880	0.89	-1.6
2,304,140	-				-0.7
2,304,189	+				+0.7
2,304,206	+				+0.1
2,304,224	-				-0.1
2,304,365	+		DZA65_RS10885	0.21	-0.4
2,304,365	+		DZA65_RS10885	0.21	+1.6
2,304,567	-		DZA65_RS10885	0.83	-1.2
2,304,571	+		DZA65_RS10885	0.85	-0.3
2,304,571	+		DZA65_RS10885	0.85	+1.3
2,304,571	+		DZA65_RS10885	0.85	-0.3
2,304,571	+		DZA65_RS10885	0.85	-0.5
2,304,571	+		DZA65_RS10885	0.85	-0.3
2,304,572	-		DZA65_RS10885	0.85	+0.7
2,304,612	+				-0.1
2,304,613	-				-1.2
2,304,613	-				-0.6
2,304,620	+				-1.0
2,304,620	+				+0.3
2,304,621	-				+0.2
2,304,621	-				-1.4
2,304,621	-				-0.3
2,304,649	+				+0.3
2,304,650	-				-0.4
2,304,650	-				-0.1
2,304,652	+				-1.4
2,304,652	+				-0.1
2,304,675	+				-0.8
2,304,676	-				+0.5
2,304,777	+				+0.3
2,304,777	+				-0.1
2,304,777	+				-1.4
2,304,777	+				+0.4
2,304,777	+				-1.1
2,304,777	+				+0.7
2,304,777	+				-1.1
2,304,777	+				-1.3
2,304,777	+				-0.8
2,304,777	+				-0.8
2,304,777	+				+0.4
2,304,777	+				-1.8
2,304,777	+				+0.2
2,304,778	-				+0.4
2,304,778	-				-1.0
2,304,778	-				-0.3
2,304,778	-				-1.6
2,304,778	-				-0.5
2,304,778	-				-1.7
2,304,778	-				-1.5
2,304,919	+		DZA65_RS10890	0.17	-2.0
2,304,919	+		DZA65_RS10890	0.17	+0.1
2,304,920	-		DZA65_RS10890	0.17	-2.4
2,304,920	-		DZA65_RS10890	0.17	-0.7
2,305,049	+		DZA65_RS10890	0.26	-0.4
2,305,050	-		DZA65_RS10890	0.26	+0.7
2,305,107	+		DZA65_RS10890	0.30	-0.0
2,305,175	-		DZA65_RS10890	0.34	+0.6
2,305,175	-		DZA65_RS10890	0.34	+0.2
2,305,216	+		DZA65_RS10890	0.37	-0.5
2,305,216	+		DZA65_RS10890	0.37	-1.7
2,305,216	+		DZA65_RS10890	0.37	-1.8
2,305,217	-		DZA65_RS10890	0.37	-1.4
2,305,246	+		DZA65_RS10890	0.39	-2.4
2,305,246	+		DZA65_RS10890	0.39	-0.3
2,305,246	+		DZA65_RS10890	0.39	+0.2
2,305,246	+		DZA65_RS10890	0.39	+0.2
2,305,306	+		DZA65_RS10890	0.43	-0.8
2,305,308	+		DZA65_RS10890	0.43	-0.9
2,305,308	+		DZA65_RS10890	0.43	-0.2
2,305,308	+		DZA65_RS10890	0.43	+0.7
2,305,308	+		DZA65_RS10890	0.43	-0.8
2,305,308	+		DZA65_RS10890	0.43	-1.0
2,305,309	-		DZA65_RS10890	0.43	-0.5
2,305,309	-		DZA65_RS10890	0.43	+0.1
2,305,309	-		DZA65_RS10890	0.43	-2.4
2,305,309	-		DZA65_RS10890	0.43	-0.1
2,305,309	-		DZA65_RS10890	0.43	-3.0
2,305,309	-		DZA65_RS10890	0.43	-1.8
2,305,309	-		DZA65_RS10890	0.43	-0.7
2,305,313	-		DZA65_RS10890	0.44	-0.3
2,305,373	+		DZA65_RS10890	0.48	-1.2
2,305,395	+		DZA65_RS10890	0.49	+0.2
2,305,411	+		DZA65_RS10890	0.50	-1.7
2,305,412	-		DZA65_RS10890	0.51	-0.7
2,305,426	+		DZA65_RS10890	0.51	-0.8
2,305,459	+		DZA65_RS10890	0.54	+0.2
2,305,459	+		DZA65_RS10890	0.54	-0.2
2,305,459	+		DZA65_RS10890	0.54	+0.2
2,305,460	-		DZA65_RS10890	0.54	-2.2
2,305,515	-		DZA65_RS10890	0.58	-0.4
2,305,684	+		DZA65_RS10890	0.69	-1.3
2,305,684	+		DZA65_RS10890	0.69	+0.3
2,305,686	+		DZA65_RS10890	0.69	-0.4
2,305,686	+		DZA65_RS10890	0.69	+1.7
2,305,686	+		DZA65_RS10890	0.69	-1.6
2,305,687	-		DZA65_RS10890	0.69	-1.2
2,305,687	-		DZA65_RS10890	0.69	-0.8
2,305,687	-		DZA65_RS10890	0.69	-0.8
2,305,687	-		DZA65_RS10890	0.69	-0.8
2,305,687	-		DZA65_RS10890	0.69	+1.3
2,305,687	-		DZA65_RS10890	0.69	-0.7
2,305,687	-		DZA65_RS10890	0.69	-0.0
2,305,687	-		DZA65_RS10890	0.69	-2.1
2,305,705	+		DZA65_RS10890	0.71	-0.5
2,305,706	-		DZA65_RS10890	0.71	+0.7
2,305,738	+		DZA65_RS10890	0.73	-0.6
2,305,739	-		DZA65_RS10890	0.73	-0.3
2,305,739	-		DZA65_RS10890	0.73	-0.8
2,305,739	-		DZA65_RS10890	0.73	-0.2
2,305,873	-		DZA65_RS10890	0.82	+0.2
2,305,964	+		DZA65_RS10890	0.88	+0.5
2,305,971	+		DZA65_RS10890	0.89	+1.0
2,305,972	-		DZA65_RS10890	0.89	-0.8
2,305,999	+				-1.8
2,306,000	-				-0.4
2,306,000	-				+1.6
2,306,002	-				+0.2
2,306,002	-				+0.5
2,306,065	+				+0.4
2,306,065	+				+0.0
2,306,068	+				+0.2
2,306,088	+				-0.2
2,306,088	+				+0.4
2,306,102	+				+0.1
2,306,114	+				-1.2
2,306,115	-				-1.3
2,306,119	+				-1.7
2,306,120	-				+0.7
2,306,121	+				-0.8
2,306,121	+				-0.4
2,306,121	+				-0.3
2,306,121	+				+1.4
2,306,121	+				-0.6
2,306,122	-				-0.6
2,306,122	-				+1.4
2,306,135	-				+0.2
2,306,137	+				-1.6
2,306,138	-				-0.1
2,306,184	-				+0.4
2,306,184	-				-0.0
2,306,223	+				-0.4
2,306,224	-				-0.4
2,306,226	+				-0.6
2,306,226	+				+0.6
2,306,226	+				-0.7
2,306,226	+				-1.2
2,306,226	+				+1.2
2,306,227	-				+0.3
2,306,227	-				-0.6
2,306,227	-				+1.7
2,306,227	-				+0.2
2,306,227	-				+0.2
2,306,227	-				+2.2
2,306,227	-				-1.0
2,306,228	+				-0.7
2,306,228	+				+0.0
2,306,228	+				+1.5
2,306,228	+				-1.8
2,306,229	-				-0.8
2,306,229	-				+0.6
2,306,229	-				-1.3
2,306,229	-				-0.9
2,306,229	-				+0.7
2,306,236	-				-0.4
2,306,299	+				-2.2
2,306,299	+				-0.3
2,306,299	+				+0.0
2,306,299	+				-1.0
2,306,299	+				+0.2
2,306,299	+				+0.0
2,306,299	+				+0.6
2,306,300	-				-1.3
2,306,300	-				+0.2
2,306,300	-				-1.2
2,306,300	-				+1.0
2,306,300	-				+0.7
2,306,300	-				+0.3
2,306,300	-				+1.0
2,306,301	+				+1.5
2,306,301	+				+0.7
2,306,301	+				-0.4
2,306,302	-				+1.2
2,306,302	-				+0.6
2,306,323	+				+0.4
2,306,323	+				+0.6
2,306,323	+				+0.6
2,306,323	+				+0.3
2,306,323	+				+1.7
2,306,324	-				-2.2
2,306,324	-				-1.1
2,306,326	+				+0.2
2,306,326	+				+2.5
2,306,413	+		DZA65_RS22880	0.20	-0.2
2,306,479	+		DZA65_RS22880	0.57	+1.2
2,306,527	-		DZA65_RS22880	0.84	-1.5
2,306,531	+		DZA65_RS22880	0.86	-1.8
2,306,531	+		DZA65_RS22880	0.86	-1.4
2,306,531	+		DZA65_RS22880	0.86	-0.5
2,306,531	+		DZA65_RS22880	0.86	-0.8
2,306,531	+		DZA65_RS22880	0.86	+2.3
2,306,531	+		DZA65_RS22880	0.86	+0.6
2,306,532	-		DZA65_RS22880	0.87	+1.5
2,306,532	-		DZA65_RS22880	0.87	+0.2
2,306,543	+				+1.3
2,306,543	+				+0.2
2,306,552	+				-0.8
2,306,563	+				+1.7
2,306,564	-				+0.2
2,306,624	+				+0.6
2,306,624	+				+1.2
2,306,624	+				-0.7
2,306,624	+				+0.8
2,306,657	+				-0.4
2,306,658	-				-0.4
2,306,658	-				+1.0
2,306,658	-				-0.2
2,306,769	+				-1.1
2,306,770	-				-1.2
2,306,868	+		DZA65_RS10895	0.14	+1.9
2,306,869	-		DZA65_RS10895	0.14	+0.9
2,306,893	-		DZA65_RS10895	0.16	+0.0
2,307,045	+		DZA65_RS10895	0.25	-0.8