Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10800

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,284,939	-		DZA65_RS10795	0.40	-2.8
2,284,939	-		DZA65_RS10795	0.40	+0.7
2,284,981	-		DZA65_RS10795	0.45	-0.8
2,285,021	+		DZA65_RS10795	0.50	+0.8
2,285,021	+		DZA65_RS10795	0.50	+0.4
2,285,021	+		DZA65_RS10795	0.50	-1.4
2,285,022	-		DZA65_RS10795	0.50	+0.2
2,285,022	-		DZA65_RS10795	0.50	+1.2
2,285,039	+		DZA65_RS10795	0.52	+0.8
2,285,040	-		DZA65_RS10795	0.52	-0.7
2,285,040	-		DZA65_RS10795	0.52	-0.2
2,285,040	-		DZA65_RS10795	0.52	-0.2
2,285,154	+		DZA65_RS10795	0.66	+0.0
2,285,238	-		DZA65_RS10795	0.77	-0.2
2,285,238	-		DZA65_RS10795	0.77	-1.8
2,285,259	-		DZA65_RS10795	0.79	+0.8
2,285,304	+		DZA65_RS10795	0.85	+0.0
2,285,304	+		DZA65_RS10795	0.85	+0.8
2,285,305	-		DZA65_RS10795	0.85	-1.6
2,285,305	-		DZA65_RS10795	0.85	-0.4
2,285,305	-		DZA65_RS10795	0.85	+0.8
2,285,305	-		DZA65_RS10795	0.85	+2.2
2,285,403	+				+0.4
2,285,462	-				+0.9
2,285,494	-				+1.6
2,285,515	+				-2.3
2,285,515	+				-0.4
2,285,515	+				+0.5
2,285,515	+				+0.5
2,285,515	+				-0.8
2,285,515	+				-0.7
2,285,515	+				-0.5
2,285,516	-				+1.7
2,285,516	-				+0.5
2,285,516	-				+0.2
2,285,516	-				+0.1
2,285,516	-				-0.6
2,285,519	+				-1.4
2,285,520	-				+0.4
2,285,558	+				-1.2
2,285,559	-				+0.3
2,285,561	-				+1.2
2,285,561	-				+0.2
2,285,561	-				-0.6
2,285,592	+				+0.4
2,285,592	+				+0.8
2,285,592	+				+0.6
2,285,592	+				-0.0
2,285,592	+				+0.2
2,285,592	+				+0.4
2,285,592	+				+0.5
2,285,592	+				+1.2
2,285,592	+				+0.2
2,285,592	+				-0.1
2,285,592	+				-1.0
2,285,592	+				-0.5
2,285,592	+				-1.4
2,285,593	-				-1.0
2,285,593	-				+1.2
2,285,593	-				-2.6
2,285,593	-				-2.2
2,285,593	-				-1.4
2,285,593	-				-0.4
2,285,593	-				-0.6
2,285,593	-				-0.0
2,285,593	-				-0.2
2,285,636	-				-2.4
2,285,653	+				-0.0
2,285,653	+				-0.7
2,285,654	-				+0.7
2,285,741	+				-0.5
2,285,792	+				+1.2
2,285,792	+				+1.5
2,285,792	+				+1.2
2,285,792	+				+1.4
2,285,792	+				+0.2
2,285,792	+				-0.8
2,285,792	+				+1.0
2,285,792	+				+2.5
2,285,792	+				+0.8
2,285,792	+				+0.2
2,285,792	+				+0.2
2,285,792	+				-0.8
2,285,792	+				-0.8
2,285,792	+				-0.2
2,285,792	+				+1.9
2,285,792	+				+1.3
2,285,793	-				+0.3
2,285,793	-				-0.8
2,285,793	-				-0.6
2,285,793	-				-2.0
2,285,793	-				+0.3
2,285,793	-				+0.2
2,285,793	-				-1.8
2,285,793	-				-1.8
2,285,793	-				+1.4
2,285,793	-				-0.1
2,285,793	-				-1.3
2,285,793	-				+0.2
2,285,793	-				-0.2
2,285,793	-				-0.0
2,285,794	+				-1.1
2,285,794	+				-1.1
2,285,794	+				-1.2
2,285,794	+				-1.8
2,285,794	+				+0.8
2,285,795	-				-3.0
2,285,798	+				+0.8
2,285,798	+				+0.4
2,285,798	+				+0.6
2,285,798	+				-0.0
2,285,798	+				+0.7
2,285,798	+				+0.4
2,285,798	+				-1.8
2,285,799	-				+0.9
2,285,799	-				+1.2
2,285,799	-				+0.2
2,285,799	-				-0.6
2,285,799	-				-1.6
2,285,799	-				+1.2
2,285,799	-				-0.1
2,285,799	-				-0.2
2,285,809	+				-0.7
2,285,810	-				-0.8
2,285,810	-				+0.8
2,285,891	-		DZA65_RS10800	0.17	-1.2
2,285,940	-		DZA65_RS10800	0.25	-2.1
2,285,969	+		DZA65_RS10800	0.30	-0.6
2,285,969	+		DZA65_RS10800	0.30	-0.3
2,285,969	+		DZA65_RS10800	0.30	+0.0
2,285,969	+		DZA65_RS10800	0.30	+0.2
2,285,969	+		DZA65_RS10800	0.30	-0.1
2,285,969	+		DZA65_RS10800	0.30	+0.2
2,285,969	+		DZA65_RS10800	0.30	+1.0
2,285,970	-		DZA65_RS10800	0.30	-0.2
2,285,970	-		DZA65_RS10800	0.30	-0.3
2,285,970	-		DZA65_RS10800	0.30	+0.5
2,285,970	-		DZA65_RS10800	0.30	+1.0
2,285,970	-		DZA65_RS10800	0.30	+0.5
2,285,971	+		DZA65_RS10800	0.30	+2.4
2,285,971	+		DZA65_RS10800	0.30	-0.2
2,285,971	+		DZA65_RS10800	0.30	-0.3
2,285,972	-		DZA65_RS10800	0.30	+1.3
2,285,972	-		DZA65_RS10800	0.30	-0.6
2,285,972	-		DZA65_RS10800	0.30	+0.2
2,285,972	-		DZA65_RS10800	0.30	+0.4
2,285,972	-		DZA65_RS10800	0.30	+0.5
2,285,972	-		DZA65_RS10800	0.30	+0.6
2,285,975	+		DZA65_RS10800	0.31	+0.8
2,285,975	+		DZA65_RS10800	0.31	-0.1
2,285,975	+		DZA65_RS10800	0.31	+2.8
2,285,976	-		DZA65_RS10800	0.31	-0.6
2,285,976	-		DZA65_RS10800	0.31	-0.2
2,285,976	-		DZA65_RS10800	0.31	+0.2
2,285,976	-		DZA65_RS10800	0.31	+1.8
2,285,976	-		DZA65_RS10800	0.31	-0.0
2,285,976	-		DZA65_RS10800	0.31	+0.2
2,286,079	+		DZA65_RS10800	0.48	+0.2
2,286,079	+		DZA65_RS10800	0.48	-0.5
2,286,080	-		DZA65_RS10800	0.48	+1.2
2,286,080	-		DZA65_RS10800	0.48	+0.5
2,286,080	-		DZA65_RS10800	0.48	+1.3
2,286,080	-		DZA65_RS10800	0.48	+0.6
2,286,086	-		DZA65_RS10800	0.49	+0.5
2,286,148	+		DZA65_RS10800	0.59	+0.9
2,286,148	+		DZA65_RS10800	0.59	-1.1
2,286,148	+		DZA65_RS10800	0.59	+0.2
2,286,148	+		DZA65_RS10800	0.59	+0.4
2,286,158	-		DZA65_RS10800	0.60	-0.7
2,286,174	+		DZA65_RS10800	0.63	+0.1
2,286,181	+		DZA65_RS10800	0.64	-0.3
2,286,181	+		DZA65_RS10800	0.64	+1.8
2,286,224	+		DZA65_RS10800	0.71	+0.5
2,286,224	+		DZA65_RS10800	0.71	+3.0
2,286,224	+		DZA65_RS10800	0.71	+0.2
2,286,224	+		DZA65_RS10800	0.71	-0.2
2,286,224	+		DZA65_RS10800	0.71	+1.4
2,286,224	+		DZA65_RS10800	0.71	-0.8
2,286,225	-		DZA65_RS10800	0.71	-1.2
2,286,225	-		DZA65_RS10800	0.71	+0.6
2,286,225	-				+0.8
2,286,294	+		DZA65_RS10800	0.82	+0.2
2,286,295	-		DZA65_RS10800	0.82	-2.6
2,286,325	-		DZA65_RS10800	0.87	-2.2
2,286,377	+				+0.2
2,286,377	+				+1.5
2,286,377	+				-0.8
2,286,377	+				-1.2
2,286,377	+				-0.2
2,286,377	+				-1.6
2,286,377	+				-1.2
2,286,377	+				+0.3
2,286,377	+				+0.8
2,286,378	-				-0.2
2,286,378	-				-0.4
2,286,378	-				+0.7
2,286,378	-				-0.2
2,286,378	-				-1.6
2,286,378	-				-1.4
2,286,378	-				+1.5
2,286,379	+				-0.8
2,286,379	+				-2.8
2,286,379	+				+0.4
2,286,380	-				-0.1
2,286,380	-				-1.1
2,286,380	-				-0.2
2,286,380	-				+0.4
2,286,380	-				-0.2
2,286,401	+				-0.3
2,286,401	+				+0.8
2,286,402	-				+0.6
2,286,421	+				+0.9
2,286,422	-				-2.0
2,286,447	+				+0.5
2,286,447	+				+1.2
2,286,452	+				+0.2
2,286,502	+				-0.4
2,286,503	-				+0.1
2,286,702	-				+0.9
2,286,720	+				-0.7
2,286,720	+				-0.0
2,286,721	-				-0.1
2,286,802	+				-0.3
2,286,832	+				-1.3
2,286,832	+				-1.4
2,286,833	-				-2.0
2,286,833	-				-1.7
2,286,837	+				-1.1
2,286,837	+				-1.3
2,286,838	-				-0.8
2,286,841	-				+0.2
2,286,854	+				-0.4
2,286,884	+				+1.2
2,286,884	+				-2.2
2,286,884	+				-2.2
2,286,885	-				-2.2
2,286,885	-				-0.4
2,286,885	-				-3.0
2,286,885	-				-2.0
2,286,885	-				-1.1
2,286,950	+		DZA65_RS10810	0.15	-1.8
2,286,950	+		DZA65_RS10810	0.15	-0.6
2,286,950	+		DZA65_RS10810	0.15	-2.4
2,286,950	+		DZA65_RS10810	0.15	-0.8
2,286,950	+		DZA65_RS10810	0.15	-0.8
2,286,951	-		DZA65_RS10810	0.15	-1.4
2,286,951	-		DZA65_RS10810	0.15	-0.4
2,286,951	-		DZA65_RS10810	0.15	-2.1
2,286,951	-		DZA65_RS10810	0.15	-0.4
2,286,951	-		DZA65_RS10810	0.15	-0.2
2,286,951	-		DZA65_RS10810	0.15	-1.0
2,287,012	+		DZA65_RS10810	0.22	-1.6
2,287,013	-		DZA65_RS10810	0.22	-1.6
2,287,016	+		DZA65_RS10810	0.22	-1.4
2,287,016	+		DZA65_RS10810	0.22	-0.2
2,287,017	-		DZA65_RS10810	0.22	+0.2
2,287,056	-		DZA65_RS10810	0.27	-1.2
2,287,056	-		DZA65_RS10810	0.27	-2.6
2,287,166	+		DZA65_RS10810	0.40	-0.8
2,287,166	+		DZA65_RS10810	0.40	-1.4
2,287,167	-		DZA65_RS10810	0.40	-1.7
2,287,167	-		DZA65_RS10810	0.40	+0.8
2,287,167	-		DZA65_RS10810	0.40	-1.2
2,287,167	-				-0.4
2,287,184	+		DZA65_RS10810	0.42	-3.0
2,287,184	+		DZA65_RS10810	0.42	-1.2
2,287,184	+		DZA65_RS10810	0.42	-0.8
2,287,184	+		DZA65_RS10810	0.42	-0.2
2,287,185	-		DZA65_RS10810	0.42	+0.8
2,287,185	-		DZA65_RS10810	0.42	-2.2
2,287,185	-		DZA65_RS10810	0.42	-1.9
2,287,196	+		DZA65_RS10810	0.43	-2.4
2,287,352	+		DZA65_RS10810	0.62	-1.9