Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10090

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,136,051	+		DZA65_RS10085	0.71	+0.7
2,136,051	+		DZA65_RS10085	0.71	+0.6
2,136,051	+		DZA65_RS10085	0.71	+0.2
2,136,051	+		DZA65_RS10085	0.71	-1.4
2,136,052	-		DZA65_RS10085	0.71	+0.0
2,136,108	-		DZA65_RS10085	0.75	-2.6
2,136,214	+		DZA65_RS10085	0.82	+0.0
2,136,215	-		DZA65_RS10085	0.82	+0.0
2,136,215	-		DZA65_RS10085	0.82	+0.7
2,136,249	-		DZA65_RS10085	0.84	+0.4
2,136,249	-		DZA65_RS10085	0.84	-0.8
2,136,249	-		DZA65_RS10085	0.84	+1.2
2,136,341	+		DZA65_RS10085	0.90	-0.8
2,136,391	+				+1.4
2,136,392	-				-1.2
2,136,392	-				+1.6
2,136,392	-				+0.0
2,136,405	+				-0.3
2,136,418	+				-0.0
2,136,418	+				+0.4
2,136,418	+				+1.8
2,136,418	+				+0.1
2,136,419	-				-0.5
2,136,419	-				+0.3
2,136,421	+				+0.7
2,136,422	-				+0.1
2,136,422	-				-0.4
2,136,438	-				-0.7
2,136,466	+				-0.8
2,136,467	-				-0.8
2,136,467	-				+0.8
2,136,506	+				+0.4
2,136,506	+				-0.2
2,136,506	+				+1.1
2,136,507	-				+0.0
2,136,507	-				-0.4
2,136,507	-				-0.5
2,136,507	-				-1.1
2,136,514	+				+0.2
2,136,547	+				+0.2
2,136,552	+				-2.2
2,136,553	-				-1.1
2,136,566	+				-0.6
2,136,881	+				-0.3
2,136,900	-				-1.1
2,136,903	-				-1.0
2,136,955	+				+0.2
2,136,955	+				-1.4
2,136,957	+				+0.4
2,136,958	-				-0.2
2,137,027	+				-0.5
2,137,030	-				-0.2
2,137,059	+				+0.2
2,137,060	-				+0.3
2,137,060	-				-0.5
2,137,227	+		DZA65_RS10090	0.21	-1.6
2,137,228	-		DZA65_RS10090	0.21	+0.7
2,137,246	+		DZA65_RS10090	0.23	-0.8
2,137,246	+		DZA65_RS10090	0.23	-0.4
2,137,247	-		DZA65_RS10090	0.23	-0.0
2,137,247	-		DZA65_RS10090	0.23	+0.8
2,137,247	-		DZA65_RS10090	0.23	-0.8
2,137,247	-		DZA65_RS10090	0.23	+1.2
2,137,247	-		DZA65_RS10090	0.23	-0.3
2,137,274	+		DZA65_RS10090	0.25	+1.0
2,137,294	+		DZA65_RS10090	0.26	-0.1
2,137,295	-		DZA65_RS10090	0.26	+0.4
2,137,296	+		DZA65_RS10090	0.26	-0.2
2,137,316	-		DZA65_RS10090	0.28	-1.4
2,137,316	-		DZA65_RS10090	0.28	+0.4
2,137,316	-		DZA65_RS10090	0.28	+1.6
2,137,321	+		DZA65_RS10090	0.28	-0.8
2,137,321	+		DZA65_RS10090	0.28	+1.8
2,137,321	+				-0.4
2,137,321	+		DZA65_RS10090	0.28	+0.1
2,137,321	+				-1.8
2,137,321	+		DZA65_RS10090	0.28	+0.2
2,137,321	+		DZA65_RS10090	0.28	-1.8
2,137,321	+		DZA65_RS10090	0.28	+0.9
2,137,321	+		DZA65_RS10090	0.28	-2.0
2,137,321	+		DZA65_RS10090	0.28	+1.2
2,137,321	+		DZA65_RS10090	0.28	-0.2
2,137,321	+		DZA65_RS10090	0.28	-0.2
2,137,321	+		DZA65_RS10090	0.28	+0.8
2,137,321	+		DZA65_RS10090	0.28	+0.9
2,137,321	+		DZA65_RS10090	0.28	-1.4
2,137,322	-		DZA65_RS10090	0.28	+0.4
2,137,322	-		DZA65_RS10090	0.28	-1.8
2,137,322	-		DZA65_RS10090	0.28	+0.1
2,137,322	-		DZA65_RS10090	0.28	-0.2
2,137,322	-		DZA65_RS10090	0.28	-0.3
2,137,322	-		DZA65_RS10090	0.28	+0.2
2,137,322	-		DZA65_RS10090	0.28	+0.2
2,137,322	-		DZA65_RS10090	0.28	+0.6
2,137,322	-		DZA65_RS10090	0.28	-2.8
2,137,322	-		DZA65_RS10090	0.28	+0.3
2,137,324	-		DZA65_RS10090	0.29	-0.0
2,137,324	-		DZA65_RS10090	0.29	-0.1
2,137,335	+		DZA65_RS10090	0.29	-0.8
2,137,335	+		DZA65_RS10090	0.29	-0.8
2,137,335	+		DZA65_RS10090	0.29	+1.8
2,137,393	-		DZA65_RS10090	0.34	+0.2
2,137,393	-		DZA65_RS10090	0.34	+0.2
2,137,455	+		DZA65_RS10090	0.38	+0.9
2,137,456	-		DZA65_RS10090	0.38	-0.1
2,137,456	-		DZA65_RS10090	0.38	-0.6
2,137,456	-		DZA65_RS10090	0.38	+0.5
2,137,569	+				+0.2
2,137,570	-		DZA65_RS10090	0.46	-0.4
2,137,570	-		DZA65_RS10090	0.46	+0.8
2,137,666	-		DZA65_RS10090	0.54	+1.3
2,137,816	+		DZA65_RS10090	0.64	-0.5
2,137,816	+		DZA65_RS10090	0.64	-1.0
2,137,816	+		DZA65_RS10090	0.64	+1.4
2,137,816	+		DZA65_RS10090	0.64	-0.1
2,137,816	+		DZA65_RS10090	0.64	+1.2
2,137,817	-		DZA65_RS10090	0.65	+0.1
2,137,817	-		DZA65_RS10090	0.65	+0.1
2,137,817	-		DZA65_RS10090	0.65	+0.1
2,137,817	-		DZA65_RS10090	0.65	-2.1
2,137,817	-		DZA65_RS10090	0.65	+0.9
2,137,817	-		DZA65_RS10090	0.65	-0.1
2,137,817	-		DZA65_RS10090	0.65	-0.5
2,137,817	-		DZA65_RS10090	0.65	-0.5
2,137,817	-		DZA65_RS10090	0.65	+2.2
2,137,828	-		DZA65_RS10090	0.65	+0.9
2,137,902	+		DZA65_RS10090	0.71	+2.1
2,137,903	-		DZA65_RS10090	0.71	-2.1
2,137,946	-		DZA65_RS10090	0.74	+0.6
2,138,025	-		DZA65_RS10090	0.80	-0.7
2,138,025	-		DZA65_RS10090	0.80	+0.6
2,138,025	-		DZA65_RS10090	0.80	+0.4
2,138,044	-		DZA65_RS10090	0.81	+0.2
2,138,070	-		DZA65_RS10090	0.83	-0.2
2,138,070	-		DZA65_RS10090	0.83	+0.2
2,138,116	-		DZA65_RS10090	0.86	-0.9
2,138,184	+				-0.1
2,138,205	+				+0.2
2,138,307	+				-1.8
2,138,308	-				-0.4
2,138,308	-				-0.1
2,138,308	-				+0.4
2,138,308	-				+0.6
2,138,326	-				+0.9
2,138,348	+				-0.4
2,138,348	+				+0.2
2,138,349	-				+0.8
2,138,349	-				+0.2
2,138,353	-				+0.4
2,138,366	+				+0.2
2,138,366	+				-0.4
2,138,367	-				+1.2
2,138,367	-				+0.5
2,138,367	-				-0.4
2,138,482	+		DZA65_RS10095	0.13	+0.3
2,138,482	+		DZA65_RS10095	0.13	-1.4
2,138,483	-		DZA65_RS10095	0.13	+1.4
2,138,610	+		DZA65_RS10095	0.27	-0.5
2,138,610	+		DZA65_RS10095	0.27	-1.0
2,138,610	+		DZA65_RS10095	0.27	+1.0
2,138,719	-		DZA65_RS10095	0.40	+0.8
2,138,736	+		DZA65_RS10095	0.42	-1.5
2,138,737	-		DZA65_RS10095	0.42	+0.2
2,138,826	+		DZA65_RS10095	0.52	+3.8
2,138,826	+		DZA65_RS10095	0.52	-1.0
2,138,826	+		DZA65_RS10095	0.52	-0.4
2,138,826	+		DZA65_RS10095	0.52	+0.8
2,138,827	-		DZA65_RS10095	0.52	+0.1
2,138,827	-		DZA65_RS10095	0.52	-0.8
2,138,827	-		DZA65_RS10095	0.52	-2.1
2,138,827	-		DZA65_RS10095	0.52	-0.7
2,138,827	-		DZA65_RS10095	0.52	+1.6
2,138,911	-				-0.4
2,138,960	+		DZA65_RS10095	0.67	-1.1
2,138,961	-		DZA65_RS10095	0.67	-0.8
2,138,961	-		DZA65_RS10095	0.67	-1.4
2,138,961	-		DZA65_RS10095	0.67	-2.4
2,138,961	-		DZA65_RS10095	0.67	-0.5
2,138,964	+		DZA65_RS10095	0.67	+0.0
2,138,965	-		DZA65_RS10095	0.68	-1.0
2,138,965	-		DZA65_RS10095	0.68	-0.3
2,139,036	+		DZA65_RS10095	0.76	-2.6
2,139,036	+		DZA65_RS10095	0.76	-1.0
2,139,036	+		DZA65_RS10095	0.76	-2.4
2,139,036	+				-0.8
2,139,036	+		DZA65_RS10095	0.76	-1.1
2,139,037	-		DZA65_RS10095	0.76	+1.2
2,139,037	-		DZA65_RS10095	0.76	-1.1