Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,046,236	+		DZA65_RS09700	0.30	-0.2
2,046,320	+		DZA65_RS09700	0.37	-1.0
2,046,320	+		DZA65_RS09700	0.37	-0.8
2,046,320	+		DZA65_RS09700	0.37	-2.1
2,046,321	-		DZA65_RS09700	0.37	+0.2
2,046,324	+		DZA65_RS09700	0.37	-1.4
2,046,324	+		DZA65_RS09700	0.37	-1.3
2,046,324	+		DZA65_RS09700	0.37	-0.8
2,046,324	+		DZA65_RS09700	0.37	-0.2
2,046,324	+		DZA65_RS09700	0.37	-0.8
2,046,325	-		DZA65_RS09700	0.37	-0.9
2,046,413	+		DZA65_RS09700	0.44	+0.2
2,046,413	+		DZA65_RS09700	0.44	+0.2
2,046,414	-		DZA65_RS09700	0.45	-0.2
2,046,696	+		DZA65_RS09700	0.68	-0.6
2,046,697	-		DZA65_RS09700	0.68	+0.7
2,046,746	+		DZA65_RS09700	0.72	-0.4
2,046,747	-		DZA65_RS09700	0.73	+0.1
2,046,747	-		DZA65_RS09700	0.73	+0.0
2,046,761	+		DZA65_RS09700	0.74	-0.4
2,046,761	+		DZA65_RS09700	0.74	-1.0
2,046,823	+		DZA65_RS09700	0.79	+0.1
2,046,839	+		DZA65_RS09700	0.80	-2.1
2,046,839	+		DZA65_RS09700	0.80	-0.1
2,046,839	+		DZA65_RS09700	0.80	+0.1
2,046,839	+		DZA65_RS09700	0.80	-0.2
2,046,839	+		DZA65_RS09700	0.80	-0.8
2,046,839	+		DZA65_RS09700	0.80	+0.2
2,046,839	+		DZA65_RS09700	0.80	-0.0
2,046,840	-				-0.1
2,046,840	-		DZA65_RS09700	0.80	-1.1
2,046,840	-		DZA65_RS09700	0.80	+0.8
2,046,840	-		DZA65_RS09700	0.80	-0.4
2,046,840	-		DZA65_RS09700	0.80	+0.6
2,046,840	-		DZA65_RS09700	0.80	-0.1
2,046,840	-		DZA65_RS09700	0.80	-1.8
2,046,840	-		DZA65_RS09700	0.80	-1.9
2,046,840	-		DZA65_RS09700	0.80	+0.0
2,046,843	+		DZA65_RS09700	0.81	-2.1
2,046,843	+		DZA65_RS09700	0.81	+0.7
2,046,843	+		DZA65_RS09700	0.81	+0.6
2,046,843	+		DZA65_RS09700	0.81	+2.0
2,046,843	+		DZA65_RS09700	0.81	-1.4
2,046,843	+		DZA65_RS09700	0.81	-1.8
2,046,843	+		DZA65_RS09700	0.81	+2.5
2,046,844	-		DZA65_RS09700	0.81	-1.4
2,046,844	-		DZA65_RS09700	0.81	+0.4
2,046,844	-		DZA65_RS09700	0.81	+0.8
2,046,844	-				+0.2
2,046,915	+		DZA65_RS09700	0.87	-0.8
2,046,915	+		DZA65_RS09700	0.87	+1.5
2,046,915	+		DZA65_RS09700	0.87	-0.8
2,046,915	+		DZA65_RS09700	0.87	-0.8
2,046,916	-		DZA65_RS09700	0.87	+0.4
2,046,916	-		DZA65_RS09700	0.87	-0.6
2,046,916	-		DZA65_RS09700	0.87	-2.4
2,046,936	+		DZA65_RS09700	0.88	+1.4
2,046,942	+		DZA65_RS09700	0.89	+1.9
2,046,943	-				+1.2
2,046,964	+				+0.2
2,046,965	-				-0.8
2,047,006	-				+0.6
2,047,184	+		DZA65_RS09705	0.15	-1.1
2,047,185	-		DZA65_RS09705	0.15	-0.8
2,047,241	+		DZA65_RS09705	0.23	-1.8
2,047,242	-		DZA65_RS09705	0.23	+0.3
2,047,242	-		DZA65_RS09705	0.23	-1.6
2,047,299	+		DZA65_RS09705	0.31	+0.8
2,047,300	-		DZA65_RS09705	0.31	-0.5
2,047,393	-		DZA65_RS09705	0.43	-0.5
2,047,463	+		DZA65_RS09705	0.52	-0.3
2,047,476	+		DZA65_RS09705	0.54	-2.1
2,047,476	+		DZA65_RS09705	0.54	-0.8
2,047,476	+		DZA65_RS09705	0.54	-0.8
2,047,477	-		DZA65_RS09705	0.54	-1.5
2,047,477	-		DZA65_RS09705	0.54	-0.4
2,047,533	+		DZA65_RS09705	0.62	-1.1
2,047,534	-		DZA65_RS09705	0.62	-1.4
2,047,535	+		DZA65_RS09705	0.62	-2.1
2,047,535	+		DZA65_RS09705	0.62	-0.5
2,047,535	+		DZA65_RS09705	0.62	-0.0
2,047,536	-		DZA65_RS09705	0.62	-1.1
2,047,571	+				+1.2
2,047,572	-		DZA65_RS09705	0.67	-1.0
2,047,572	-		DZA65_RS09705	0.67	-1.6
2,047,592	+		DZA65_RS09705	0.69	+0.0
2,047,592	+		DZA65_RS09705	0.69	-1.4
2,047,625	+		DZA65_RS09705	0.74	-0.1
2,047,625	+		DZA65_RS09705	0.74	-0.2
2,047,625	+		DZA65_RS09705	0.74	-0.9
2,047,625	+		DZA65_RS09705	0.74	+1.2
2,047,625	+		DZA65_RS09705	0.74	-1.2
2,047,625	+		DZA65_RS09705	0.74	+0.6
2,047,626	-		DZA65_RS09705	0.74	-1.9
2,047,626	-		DZA65_RS09705	0.74	+1.2
2,047,626	-		DZA65_RS09705	0.74	-0.5
2,047,626	-		DZA65_RS09705	0.74	+0.4
2,047,628	+		DZA65_RS09705	0.74	-1.1
2,047,629	-		DZA65_RS09705	0.74	-0.3
2,047,655	+		DZA65_RS09705	0.78	-1.4
2,047,656	-		DZA65_RS09705	0.78	-1.0
2,047,656	-		DZA65_RS09705	0.78	+0.2
2,047,656	-		DZA65_RS09705	0.78	-1.4
2,047,656	-		DZA65_RS09705	0.78	+0.1
2,047,676	-		DZA65_RS09705	0.81	-0.6
2,047,715	+		DZA65_RS09705	0.86	-2.9
2,047,716	-		DZA65_RS09705	0.86	+0.0
2,047,716	-		DZA65_RS09705	0.86	+0.1
2,047,805	-				-0.8
2,047,847	-				-0.6
2,047,847	-				-0.5
2,047,864	+				+1.4
2,047,865	-				+0.3
2,047,885	+				-0.5
2,048,036	+				+1.9
2,048,036	+				+1.0
2,048,037	-				+1.2
2,048,037	-				-2.8
2,048,037	-				-1.1
2,048,205	+		DZA65_RS09710	0.14	-0.6
2,048,205	+		DZA65_RS09710	0.14	+0.6
2,048,205	+		DZA65_RS09710	0.14	+0.8
2,048,206	-		DZA65_RS09710	0.14	+0.5
2,048,206	-		DZA65_RS09710	0.14	+0.7
2,048,239	+		DZA65_RS09710	0.16	-0.4
2,048,239	+		DZA65_RS09710	0.16	+0.9
2,048,239	+		DZA65_RS09710	0.16	-0.8
2,048,240	-		DZA65_RS09710	0.16	-0.5
2,048,240	-		DZA65_RS09710	0.16	+0.4
2,048,240	-		DZA65_RS09710	0.16	+0.2
2,048,259	-		DZA65_RS09710	0.18	+0.7
2,048,321	-		DZA65_RS09710	0.22	+1.5
2,048,424	+		DZA65_RS09710	0.29	-1.0
2,048,425	-		DZA65_RS09710	0.29	+0.8
2,048,425	-		DZA65_RS09710	0.29	+1.2
2,048,455	+		DZA65_RS09710	0.32	+2.4
2,048,455	+		DZA65_RS09710	0.32	+0.1
2,048,455	+		DZA65_RS09710	0.32	+0.2
2,048,455	+		DZA65_RS09710	0.32	-0.2
2,048,455	+		DZA65_RS09710	0.32	+0.4
2,048,456	-		DZA65_RS09710	0.32	-0.4
2,048,456	-				+2.8
2,048,621	+		DZA65_RS09710	0.43	-0.6
2,048,627	+		DZA65_RS09710	0.44	+0.7
2,048,627	+		DZA65_RS09710	0.44	-1.4
2,048,627	+		DZA65_RS09710	0.44	+1.5
2,048,628	-		DZA65_RS09710	0.44	+0.8
2,048,628	-		DZA65_RS09710	0.44	-3.2
2,048,628	-		DZA65_RS09710	0.44	-0.9
2,048,628	-		DZA65_RS09710	0.44	+1.6
2,048,628	-				-0.1
2,048,628	-		DZA65_RS09710	0.44	+0.1
2,048,803	-		DZA65_RS09710	0.56	+0.8