Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,989,642	+		DZA65_RS09465	0.17	-0.3
1,989,755	-		DZA65_RS09465	0.28	+0.3
1,989,814	+		DZA65_RS09465	0.34	-0.0
1,989,814	+		DZA65_RS09465	0.34	+0.8
1,989,815	-		DZA65_RS09465	0.34	+2.1
1,989,815	-		DZA65_RS09465	0.34	+0.1
1,989,890	-		DZA65_RS09465	0.41	+0.7
1,990,065	+		DZA65_RS09465	0.59	+0.3
1,990,066	-		DZA65_RS09465	0.59	-0.1
1,990,116	+		DZA65_RS09465	0.64	-2.1
1,990,135	+		DZA65_RS09465	0.66	+0.4
1,990,150	+		DZA65_RS09465	0.67	-0.1
1,990,150	+		DZA65_RS09465	0.67	+1.6
1,990,150	+		DZA65_RS09465	0.67	+0.5
1,990,150	+		DZA65_RS09465	0.67	+1.1
1,990,151	-		DZA65_RS09465	0.67	+0.8
1,990,151	-		DZA65_RS09465	0.67	-0.6
1,990,151	-		DZA65_RS09465	0.67	+2.6
1,990,151	-		DZA65_RS09465	0.67	+1.8
1,990,156	+		DZA65_RS09465	0.68	-0.2
1,990,156	+		DZA65_RS09465	0.68	-0.7
1,990,157	-		DZA65_RS09465	0.68	+0.1
1,990,451	+				+1.3
1,990,451	+				-0.8
1,990,451	+				+0.0
1,990,452	-				-0.5
1,990,452	-				-0.5
1,990,596	+				-2.6
1,990,597	-				+0.3
1,990,597	-				-1.0
1,990,597	-				+0.4
1,990,597	-				+0.0
1,990,597	-				+0.3
1,990,597	-				+0.0
1,990,667	+				-0.3
1,990,667	+				-0.2
1,990,668	-				+0.1
1,990,668	-				-0.3
1,990,668	-				-1.6
1,990,668	-				+0.2
1,990,690	+				-2.3
1,990,690	+				-0.7
1,990,690	+				+1.7
1,990,691	-				-0.2
1,990,691	-				+0.0
1,990,808	-		DZA65_RS09470	0.10	-0.2
1,990,851	+		DZA65_RS09470	0.13	+0.3
1,990,851	+		DZA65_RS09470	0.13	-1.3
1,990,988	-		DZA65_RS09470	0.21	+0.3
1,991,003	-		DZA65_RS09470	0.22	-0.3
1,991,027	-		DZA65_RS09470	0.23	-0.1
1,991,214	+		DZA65_RS09470	0.34	-2.1
1,991,214	+		DZA65_RS09470	0.34	-0.7
1,991,214	+		DZA65_RS09470	0.34	+0.3
1,991,214	+		DZA65_RS09470	0.34	-1.7
1,991,214	+		DZA65_RS09470	0.34	-0.1
1,991,214	+		DZA65_RS09470	0.34	-0.6
1,991,214	+		DZA65_RS09470	0.34	-0.7
1,991,214	+		DZA65_RS09470	0.34	+1.3
1,991,214	+		DZA65_RS09470	0.34	-0.0
1,991,215	-		DZA65_RS09470	0.34	-0.0
1,991,306	-		DZA65_RS09470	0.40	-1.3
1,991,320	+		DZA65_RS09470	0.40	-1.3
1,991,321	-		DZA65_RS09470	0.40	+1.5
1,991,326	-		DZA65_RS09470	0.41	-1.6
1,991,326	-		DZA65_RS09470	0.41	-0.1
1,991,332	+		DZA65_RS09470	0.41	-1.2
1,991,335	+		DZA65_RS09470	0.41	-0.1
1,991,336	-		DZA65_RS09470	0.41	-2.3
1,991,421	-		DZA65_RS09470	0.46	+0.2
1,991,467	-		DZA65_RS09470	0.49	-0.1
1,991,513	-		DZA65_RS09470	0.52	-0.2
1,991,578	+		DZA65_RS09470	0.55	-0.6
1,991,578	+		DZA65_RS09470	0.55	+1.0
1,991,578	+		DZA65_RS09470	0.55	+1.3
1,991,578	+		DZA65_RS09470	0.55	+0.1
1,991,578	+		DZA65_RS09470	0.55	-0.5
1,991,578	+		DZA65_RS09470	0.55	+0.1
1,991,578	+		DZA65_RS09470	0.55	-0.2
1,991,578	+		DZA65_RS09470	0.55	-0.5
1,991,578	+		DZA65_RS09470	0.55	-0.4
1,991,579	-		DZA65_RS09470	0.56	-0.7
1,991,579	-		DZA65_RS09470	0.56	-0.4
1,991,579	-		DZA65_RS09470	0.56	+0.3
1,991,579	-		DZA65_RS09470	0.56	+0.8
1,991,579	-		DZA65_RS09470	0.56	+0.5
1,991,579	-		DZA65_RS09470	0.56	+1.1
1,991,579	-		DZA65_RS09470	0.56	-0.5
1,991,579	-				+3.4
1,991,579	-		DZA65_RS09470	0.56	-0.7
1,991,585	+		DZA65_RS09470	0.56	+1.3
1,991,585	+		DZA65_RS09470	0.56	+1.3
1,991,585	+		DZA65_RS09470	0.56	-0.7
1,991,586	-		DZA65_RS09470	0.56	+1.1
1,991,586	-		DZA65_RS09470	0.56	-0.7
1,991,586	-		DZA65_RS09470	0.56	-0.5
1,991,755	+		DZA65_RS09470	0.66	+0.5
1,991,755	+		DZA65_RS09470	0.66	+0.3
1,991,755	+		DZA65_RS09470	0.66	+0.3
1,991,756	-		DZA65_RS09470	0.66	-0.3
1,991,756	-		DZA65_RS09470	0.66	+0.3
1,991,764	+		DZA65_RS09470	0.66	+2.1
1,991,764	+		DZA65_RS09470	0.66	+0.1
1,991,764	+		DZA65_RS09470	0.66	+0.5
1,991,764	+		DZA65_RS09470	0.66	-0.7
1,991,764	+		DZA65_RS09470	0.66	-0.2
1,991,764	+		DZA65_RS09470	0.66	+0.3
1,991,764	+		DZA65_RS09470	0.66	-1.6
1,991,765	-		DZA65_RS09470	0.66	-0.1
1,991,765	-		DZA65_RS09470	0.66	-0.3
1,991,765	-		DZA65_RS09470	0.66	+1.3
1,991,765	-		DZA65_RS09470	0.66	-0.3
1,991,765	-		DZA65_RS09470	0.66	-0.3
1,991,765	-		DZA65_RS09470	0.66	+0.6
1,991,765	-		DZA65_RS09470	0.66	+0.8
1,991,843	+		DZA65_RS09470	0.71	+0.9
1,991,909	+		DZA65_RS09470	0.75	+0.3
1,991,957	+		DZA65_RS09470	0.78	+1.6
1,991,957	+		DZA65_RS09470	0.78	-2.7
1,991,958	-		DZA65_RS09470	0.78	+0.8
1,991,986	+		DZA65_RS09470	0.79	+0.8
1,992,030	+		DZA65_RS09470	0.82	+0.3
1,992,030	+		DZA65_RS09470	0.82	-1.2
1,992,030	+		DZA65_RS09470	0.82	+0.7
1,992,049	+		DZA65_RS09470	0.83	-1.7
1,992,049	+		DZA65_RS09470	0.83	-2.1
1,992,049	+		DZA65_RS09470	0.83	-2.7
1,992,049	+		DZA65_RS09470	0.83	-1.1
1,992,049	+		DZA65_RS09470	0.83	-0.9
1,992,049	+		DZA65_RS09470	0.83	-0.4
1,992,049	+		DZA65_RS09470	0.83	+0.4
1,992,050	-		DZA65_RS09470	0.83	-0.5
1,992,050	-		DZA65_RS09470	0.83	-0.5
1,992,050	-		DZA65_RS09470	0.83	+0.3
1,992,050	-		DZA65_RS09470	0.83	-2.1
1,992,050	-		DZA65_RS09470	0.83	-2.3
1,992,050	-		DZA65_RS09470	0.83	+0.3
1,992,097	+		DZA65_RS09470	0.86	+2.1
1,992,097	+		DZA65_RS09470	0.86	-0.2
1,992,097	+		DZA65_RS09470	0.86	-0.1
1,992,097	+		DZA65_RS09470	0.86	-1.2
1,992,097	+		DZA65_RS09470	0.86	-0.4
1,992,097	+		DZA65_RS09470	0.86	-0.9
1,992,098	-		DZA65_RS09470	0.86	-1.1
1,992,098	-		DZA65_RS09470	0.86	-0.4
1,992,224	+				+0.6
1,992,224	+				-0.3
1,992,224	+				-2.7
1,992,225	-				-0.2
1,992,225	-				-1.1
1,992,313	+				-0.9
1,992,314	-				+0.3
1,992,417	-				-0.4
1,992,589	+		DZA65_RS09475	0.31	-1.6
1,992,589	+		DZA65_RS09475	0.31	-0.3
1,992,590	-		DZA65_RS09475	0.31	-0.9
1,992,651	+		DZA65_RS09475	0.40	-2.3
1,992,651	+		DZA65_RS09475	0.40	-0.5
1,992,651	+		DZA65_RS09475	0.40	-1.0
1,992,651	+		DZA65_RS09475	0.40	-0.2
1,992,652	-		DZA65_RS09475	0.40	-0.3
1,992,652	-		DZA65_RS09475	0.40	-0.1
1,992,652	-		DZA65_RS09475	0.40	+1.3
1,992,652	-		DZA65_RS09475	0.40	+0.6
1,992,652	-		DZA65_RS09475	0.40	-0.3
1,992,652	-		DZA65_RS09475	0.40	-1.2
1,992,653	+		DZA65_RS09475	0.40	-0.2
1,992,653	+		DZA65_RS09475	0.40	-0.1
1,992,653	+		DZA65_RS09475	0.40	-1.7
1,992,653	+		DZA65_RS09475	0.40	-0.3
1,992,666	+		DZA65_RS09475	0.42	+0.8
1,992,667	-		DZA65_RS09475	0.42	+1.1
1,992,791	+		DZA65_RS09475	0.59	-1.0
1,992,791	+		DZA65_RS09475	0.59	+0.1
1,992,821	+		DZA65_RS09475	0.63	-0.5
1,992,821	+		DZA65_RS09475	0.63	-0.3
1,992,821	+		DZA65_RS09475	0.63	-0.5
1,992,822	-		DZA65_RS09475	0.63	-0.1
1,992,822	-		DZA65_RS09475	0.63	+0.5
1,992,825	+		DZA65_RS09475	0.63	-1.9
1,992,825	+		DZA65_RS09475	0.63	+1.5
1,992,825	+		DZA65_RS09475	0.63	-0.1
1,992,825	+		DZA65_RS09475	0.63	-0.7
1,992,825	+		DZA65_RS09475	0.63	+1.0
1,992,825	+		DZA65_RS09475	0.63	-0.1
1,992,825	+		DZA65_RS09475	0.63	+0.5
1,992,825	+		DZA65_RS09475	0.63	-0.2
1,992,825	+		DZA65_RS09475	0.63	+0.8
1,992,826	-		DZA65_RS09475	0.63	-0.1
1,992,826	-		DZA65_RS09475	0.63	-0.1
1,992,826	-		DZA65_RS09475	0.63	-0.7
1,992,826	-		DZA65_RS09475	0.63	-0.9
1,992,826	-		DZA65_RS09475	0.63	-0.6
1,992,826	-		DZA65_RS09475	0.63	+0.0
1,992,826	-		DZA65_RS09475	0.63	+0.6
1,992,826	-		DZA65_RS09475	0.63	+1.7
1,992,826	-		DZA65_RS09475	0.63	-0.2
1,992,826	-		DZA65_RS09475	0.63	-1.7
1,992,826	-		DZA65_RS09475	0.63	+1.3
1,992,826	-		DZA65_RS09475	0.63	+0.0
1,992,828	+		DZA65_RS09475	0.64	-0.4
1,992,828	+		DZA65_RS09475	0.64	-0.2
1,992,861	+		DZA65_RS09475	0.68	+0.3
1,992,862	-		DZA65_RS09475	0.68	-1.5
1,992,931	-		DZA65_RS09475	0.78	-0.7
1,992,931	-		DZA65_RS09475	0.78	+0.1
1,992,931	-		DZA65_RS09475	0.78	-0.0
1,992,955	-		DZA65_RS09475	0.81	+0.8
1,992,967	+		DZA65_RS09475	0.83	+0.3
1,992,967	+		DZA65_RS09475	0.83	+0.9
1,992,967	+		DZA65_RS09475	0.83	+0.1
1,992,968	-		DZA65_RS09475	0.83	+1.1
1,992,968	-		DZA65_RS09475	0.83	-0.1
1,992,968	-		DZA65_RS09475	0.83	-0.2
1,992,968	-		DZA65_RS09475	0.83	-0.3
1,992,968	-		DZA65_RS09475	0.83	-0.5
1,992,968	-		DZA65_RS09475	0.83	+0.4
1,993,004	+		DZA65_RS09475	0.88	-1.0
1,993,004	+		DZA65_RS09475	0.88	-0.3
1,993,004	+		DZA65_RS09475	0.88	+0.1
1,993,004	+		DZA65_RS09475	0.88	-0.5
1,993,004	+		DZA65_RS09475	0.88	-0.3
1,993,004	+		DZA65_RS09475	0.88	-0.2
1,993,004	+		DZA65_RS09475	0.88	-0.5
1,993,004	+		DZA65_RS09475	0.88	+1.9
1,993,004	+		DZA65_RS09475	0.88	-0.5
1,993,005	-		DZA65_RS09475	0.88	+0.3
1,993,005	-		DZA65_RS09475	0.88	-0.2
1,993,005	-		DZA65_RS09475	0.88	+0.1
1,993,005	-		DZA65_RS09475	0.88	+0.3
1,993,005	-		DZA65_RS09475	0.88	+0.8
1,993,005	-		DZA65_RS09475	0.88	-1.6
1,993,008	+		DZA65_RS09475	0.88	-0.2
1,993,008	+		DZA65_RS09475	0.88	-1.7
1,993,008	+		DZA65_RS09475	0.88	+0.5
1,993,008	+		DZA65_RS09475	0.88	-0.7
1,993,008	+		DZA65_RS09475	0.88	-1.0
1,993,008	+		DZA65_RS09475	0.88	-2.9
1,993,008	+		DZA65_RS09475	0.88	-0.6
1,993,008	+		DZA65_RS09475	0.88	+1.4
1,993,008	+		DZA65_RS09475	0.88	+0.1
1,993,008	+		DZA65_RS09475	0.88	+0.1
1,993,008	+		DZA65_RS09475	0.88	-1.2
1,993,008	+		DZA65_RS09475	0.88	-0.2
1,993,009	-		DZA65_RS09475	0.88	-1.3
1,993,009	-		DZA65_RS09475	0.88	+1.7
1,993,009	-				+0.3
1,993,009	-		DZA65_RS09475	0.88	+0.3
1,993,009	-		DZA65_RS09475	0.88	-0.9
1,993,009	-		DZA65_RS09475	0.88	-0.0
1,993,009	-		DZA65_RS09475	0.88	+0.3
1,993,009	-		DZA65_RS09475	0.88	+0.6
1,993,009	-		DZA65_RS09475	0.88	+0.1
1,993,010	+		DZA65_RS09475	0.88	+1.3
1,993,184	+				+0.3
1,993,184	+				+0.6
1,993,184	+				-0.5
1,993,202	-				+2.4
1,993,212	+				+0.2
1,993,212	+				-0.9
1,993,212	+				-1.0
1,993,213	-				-0.1
1,993,214	+				+0.8
1,993,214	+				-0.0
1,993,214	+				-1.7
1,993,214	+				-0.6
1,993,214	+				-1.2
1,993,214	+				-0.6
1,993,229	+				+1.6
1,993,247	+				-0.2
1,993,248	-				-0.7
1,993,296	+				+0.8
1,993,296	+				+1.5
1,993,304	-				+0.0
1,993,304	-				+0.3
1,993,309	+				-0.3
1,993,310	-				+1.1
1,993,310	-				-1.2
1,993,312	+				+0.6
1,993,312	+				-0.1
1,993,312	+				+0.7
1,993,312	+				-0.3
1,993,313	-				-1.9