Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09275

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,955,151	-				+0.3
1,955,257	+				-1.0
1,955,411	-				-0.3
1,955,499	+		DZA65_RS09270	0.25	+0.6
1,955,499	+		DZA65_RS09270	0.25	+0.1
1,955,536	-		DZA65_RS09270	0.35	+0.1
1,955,599	-		DZA65_RS09270	0.51	+0.3
1,955,782	+				-0.9
1,955,782	+				+0.5
1,955,783	-				+0.0
1,955,783	-				+1.0
1,955,783	-				+1.3
1,955,914	+				-0.4
1,955,974	+				+0.5
1,955,979	+				+2.2
1,955,979	+				-0.7
1,955,979	+				+0.4
1,955,980	-				+0.2
1,955,980	-				-1.0
1,955,984	-				-0.9
1,955,984	-				+0.5
1,955,989	+				+0.3
1,956,069	+				-2.5
1,956,069	+				+0.0
1,956,069	+				-0.2
1,956,069	+				-1.9
1,956,070	-				-0.9
1,956,070	-				-1.3
1,956,070	-				+0.3
1,956,140	+				-0.5
1,956,141	-				+0.1
1,956,169	-		DZA65_RS09275	0.14	-0.3
1,956,198	+		DZA65_RS09275	0.19	-2.1
1,956,212	+		DZA65_RS09275	0.21	+1.0
1,956,213	-		DZA65_RS09275	0.21	-0.7
1,956,213	-		DZA65_RS09275	0.21	-1.2
1,956,234	-		DZA65_RS09275	0.24	+0.7
1,956,247	+		DZA65_RS09275	0.26	-0.3
1,956,247	+		DZA65_RS09275	0.26	-0.4
1,956,247	+		DZA65_RS09275	0.26	+0.3
1,956,247	+		DZA65_RS09275	0.26	+0.8
1,956,248	-		DZA65_RS09275	0.26	-1.1
1,956,248	-		DZA65_RS09275	0.26	+0.3
1,956,306	+		DZA65_RS09275	0.35	+0.9
1,956,357	+		DZA65_RS09275	0.43	+1.1
1,956,357	+		DZA65_RS09275	0.43	-1.3
1,956,358	-		DZA65_RS09275	0.43	+0.5
1,956,358	-		DZA65_RS09275	0.43	+2.0
1,956,391	+		DZA65_RS09275	0.48	+0.4
1,956,410	+		DZA65_RS09275	0.51	+0.6
1,956,410	+		DZA65_RS09275	0.51	-1.1
1,956,410	+		DZA65_RS09275	0.51	+1.8
1,956,411	-		DZA65_RS09275	0.51	+0.1
1,956,411	-		DZA65_RS09275	0.51	+2.2
1,956,457	+		DZA65_RS09275	0.58	+0.6
1,956,457	+		DZA65_RS09275	0.58	-0.2
1,956,457	+		DZA65_RS09275	0.58	+1.8
1,956,457	+		DZA65_RS09275	0.58	+0.5
1,956,457	+		DZA65_RS09275	0.58	-1.1
1,956,457	+		DZA65_RS09275	0.58	+1.3
1,956,457	+		DZA65_RS09275	0.58	+0.5
1,956,457	+		DZA65_RS09275	0.58	-1.7
1,956,457	+		DZA65_RS09275	0.58	+0.4
1,956,457	+		DZA65_RS09275	0.58	-0.1
1,956,457	+		DZA65_RS09275	0.58	+0.2
1,956,457	+		DZA65_RS09275	0.58	+0.1
1,956,457	+		DZA65_RS09275	0.58	+0.1
1,956,457	+		DZA65_RS09275	0.58	-2.3
1,956,457	+		DZA65_RS09275	0.58	+0.5
1,956,457	+		DZA65_RS09275	0.58	-0.7
1,956,458	-		DZA65_RS09275	0.58	-2.1
1,956,458	-		DZA65_RS09275	0.58	-1.0
1,956,458	-				+1.3
1,956,458	-		DZA65_RS09275	0.58	-0.2
1,956,458	-		DZA65_RS09275	0.58	-1.0
1,956,458	-		DZA65_RS09275	0.58	+0.1
1,956,458	-		DZA65_RS09275	0.58	+0.8
1,956,458	-		DZA65_RS09275	0.58	+0.8
1,956,458	-		DZA65_RS09275	0.58	+0.3
1,956,458	-		DZA65_RS09275	0.58	-0.7
1,956,458	-		DZA65_RS09275	0.58	-1.0
1,956,458	-		DZA65_RS09275	0.58	-0.3
1,956,458	-		DZA65_RS09275	0.58	+0.4
1,956,458	-		DZA65_RS09275	0.58	+0.8
1,956,458	-		DZA65_RS09275	0.58	-0.3
1,956,458	-		DZA65_RS09275	0.58	+0.0
1,956,458	-		DZA65_RS09275	0.58	+0.7
1,956,458	-		DZA65_RS09275	0.58	-1.2
1,956,615	-		DZA65_RS09275	0.82	+0.6
1,956,615	-		DZA65_RS09275	0.82	+0.9
1,956,730	+				+0.8
1,956,731	-				+0.4
1,956,731	-				+0.5
1,956,731	-				+0.0
1,956,856	-				+0.3
1,957,051	+		DZA65_RS09280	0.26	-0.2
1,957,052	-		DZA65_RS09280	0.26	-2.1
1,957,052	-		DZA65_RS09280	0.26	-1.1
1,957,052	-		DZA65_RS09280	0.26	+1.8
1,957,052	-		DZA65_RS09280	0.26	+0.3
1,957,052	-		DZA65_RS09280	0.26	-1.2
1,957,052	-		DZA65_RS09280	0.26	-0.1
1,957,108	+		DZA65_RS09280	0.31	-0.2
1,957,108	+		DZA65_RS09280	0.31	-0.7
1,957,108	+		DZA65_RS09280	0.31	+0.6
1,957,108	+		DZA65_RS09280	0.31	+0.8
1,957,109	-		DZA65_RS09280	0.31	+0.8
1,957,109	-		DZA65_RS09280	0.31	+0.5
1,957,109	-		DZA65_RS09280	0.31	-0.3
1,957,109	-		DZA65_RS09280	0.31	-0.1
1,957,109	-		DZA65_RS09280	0.31	-1.5
1,957,109	-		DZA65_RS09280	0.31	+0.3
1,957,109	-		DZA65_RS09280	0.31	+1.3
1,957,187	+		DZA65_RS09280	0.38	-2.3
1,957,187	+		DZA65_RS09280	0.38	-2.0
1,957,187	+		DZA65_RS09280	0.38	-0.2
1,957,187	+		DZA65_RS09280	0.38	+0.3
1,957,187	+		DZA65_RS09280	0.38	-0.2
1,957,187	+		DZA65_RS09280	0.38	-0.2
1,957,187	+		DZA65_RS09280	0.38	-0.3
1,957,187	+		DZA65_RS09280	0.38	-1.1
1,957,187	+		DZA65_RS09280	0.38	-0.3
1,957,187	+		DZA65_RS09280	0.38	+0.8
1,957,188	-		DZA65_RS09280	0.38	-0.4
1,957,188	-		DZA65_RS09280	0.38	-0.2
1,957,188	-		DZA65_RS09280	0.38	-0.2
1,957,188	-				+0.3
1,957,188	-		DZA65_RS09280	0.38	-0.9
1,957,262	+		DZA65_RS09280	0.44	+0.3
1,957,262	+		DZA65_RS09280	0.44	+0.8
1,957,276	+		DZA65_RS09280	0.45	-1.3
1,957,276	+		DZA65_RS09280	0.45	+0.5
1,957,276	+		DZA65_RS09280	0.45	+0.7
1,957,303	-		DZA65_RS09280	0.48	-1.3
1,957,348	-		DZA65_RS09280	0.51	-0.1
1,957,394	+		DZA65_RS09280	0.55	-2.3
1,957,394	+		DZA65_RS09280	0.55	-1.1
1,957,394	+		DZA65_RS09280	0.55	-2.0
1,957,394	+		DZA65_RS09280	0.55	-0.9
1,957,395	-		DZA65_RS09280	0.55	-1.0
1,957,395	-		DZA65_RS09280	0.55	-0.3
1,957,395	-		DZA65_RS09280	0.55	+0.6
1,957,395	-		DZA65_RS09280	0.55	+2.8
1,957,395	-		DZA65_RS09280	0.55	-2.5
1,957,395	-		DZA65_RS09280	0.55	+0.3
1,957,395	-		DZA65_RS09280	0.55	-0.7
1,957,441	+		DZA65_RS09280	0.59	-1.1
1,957,441	+		DZA65_RS09280	0.59	+2.2
1,957,441	+		DZA65_RS09280	0.59	+0.8
1,957,441	+		DZA65_RS09280	0.59	-0.7
1,957,442	-		DZA65_RS09280	0.59	+0.9
1,957,442	-		DZA65_RS09280	0.59	-0.3
1,957,442	-		DZA65_RS09280	0.59	+0.5
1,957,517	-		DZA65_RS09280	0.66	+0.3
1,957,517	-		DZA65_RS09280	0.66	-0.6