Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08560

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,806,042	+		DZA65_RS08555	0.43	+1.0
1,806,138	+		DZA65_RS08555	0.49	+1.2
1,806,138	+		DZA65_RS08555	0.49	+0.4
1,806,138	+		DZA65_RS08555	0.49	+0.1
1,806,138	+		DZA65_RS08555	0.49	-0.3
1,806,139	-		DZA65_RS08555	0.49	+0.6
1,806,139	-		DZA65_RS08555	0.49	+1.9
1,806,139	-		DZA65_RS08555	0.49	-0.3
1,806,325	+		DZA65_RS08555	0.59	+0.1
1,806,325	+		DZA65_RS08555	0.59	-0.2
1,806,385	+		DZA65_RS08555	0.63	+1.5
1,806,385	+		DZA65_RS08555	0.63	+0.2
1,806,385	+		DZA65_RS08555	0.63	+1.3
1,806,385	+		DZA65_RS08555	0.63	+0.6
1,806,385	+		DZA65_RS08555	0.63	+0.3
1,806,385	+		DZA65_RS08555	0.63	-0.3
1,806,385	+		DZA65_RS08555	0.63	+0.5
1,806,386	-		DZA65_RS08555	0.63	-0.7
1,806,386	-		DZA65_RS08555	0.63	+0.5
1,806,386	-		DZA65_RS08555	0.63	+2.5
1,806,389	-		DZA65_RS08555	0.63	+0.5
1,806,679	+		DZA65_RS08555	0.79	+0.3
1,806,679	+		DZA65_RS08555	0.79	-0.5
1,806,679	+		DZA65_RS08555	0.79	+0.3
1,806,679	+		DZA65_RS08555	0.79	-0.7
1,806,679	+				+1.9
1,806,679	+		DZA65_RS08555	0.79	-0.7
1,806,679	+		DZA65_RS08555	0.79	+0.3
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	+1.1
1,806,679	+		DZA65_RS08555	0.79	+0.6
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	-2.8
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	+0.6
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	-0.0
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	+1.3
1,806,679	+		DZA65_RS08555	0.79	+0.5
1,806,679	+		DZA65_RS08555	0.79	-1.5
1,806,679	+		DZA65_RS08555	0.79	-0.5
1,806,679	+		DZA65_RS08555	0.79	-0.5
1,806,679	+		DZA65_RS08555	0.79	-1.3
1,806,680	-		DZA65_RS08555	0.79	-0.7
1,806,680	-		DZA65_RS08555	0.79	-1.3
1,806,680	-		DZA65_RS08555	0.79	-0.0
1,806,680	-		DZA65_RS08555	0.79	-1.7
1,806,680	-		DZA65_RS08555	0.79	+0.3
1,806,680	-		DZA65_RS08555	0.79	+0.3
1,806,680	-		DZA65_RS08555	0.79	+0.3
1,806,680	-		DZA65_RS08555	0.79	-1.5
1,806,680	-		DZA65_RS08555	0.79	-0.4
1,806,680	-		DZA65_RS08555	0.79	-0.4
1,806,680	-		DZA65_RS08555	0.79	+1.9
1,806,680	-		DZA65_RS08555	0.79	+1.2
1,806,680	-		DZA65_RS08555	0.79	-0.7
1,806,680	-		DZA65_RS08555	0.79	-0.9
1,806,723	+		DZA65_RS08555	0.82	-0.4
1,806,723	+		DZA65_RS08555	0.82	-0.2
1,806,724	-		DZA65_RS08555	0.82	-0.4
1,806,727	+		DZA65_RS08555	0.82	-0.5
1,806,727	+		DZA65_RS08555	0.82	+0.3
1,806,727	+		DZA65_RS08555	0.82	-0.3
1,806,727	+		DZA65_RS08555	0.82	-0.0
1,806,727	+		DZA65_RS08555	0.82	-2.7
1,806,728	-		DZA65_RS08555	0.82	-0.2
1,806,728	-		DZA65_RS08555	0.82	+0.7
1,806,728	-		DZA65_RS08555	0.82	-0.7
1,806,904	+				+0.3
1,806,904	+				+0.0
1,806,904	+				+0.1
1,806,904	+				-0.3
1,806,904	+				+0.4
1,806,905	-				-2.3
1,806,905	-				+0.3
1,806,905	-				+0.8
1,806,943	+				+1.9
1,806,943	+				-1.7
1,806,944	-				-0.0
1,806,944	-				+1.8
1,806,944	-				+0.5
1,807,022	+				-0.0
1,807,023	-				+3.5
1,807,023	-				-1.3
1,807,023	-				-2.7
1,807,023	-				+0.6
1,807,023	-				+0.3
1,807,023	-				-0.4
1,807,085	+				-1.3
1,807,085	+				-0.1
1,807,086	-				+2.4
1,807,108	+				-0.2
1,807,109	-				+0.7
1,807,311	+		DZA65_RS08560	0.30	-0.3
1,807,312	-		DZA65_RS08560	0.30	-0.4
1,807,422	+		DZA65_RS08560	0.41	-1.7
1,807,422	+		DZA65_RS08560	0.41	-0.3
1,807,422	+		DZA65_RS08560	0.41	-0.4
1,807,423	-		DZA65_RS08560	0.41	-0.1
1,807,551	+		DZA65_RS08560	0.54	-0.7
1,807,551	+		DZA65_RS08560	0.54	+0.8
1,807,551	+		DZA65_RS08560	0.54	+1.3
1,807,552	-		DZA65_RS08560	0.54	-0.4
1,807,552	-		DZA65_RS08560	0.54	-1.3
1,807,806	-		DZA65_RS08560	0.79	-2.3
1,807,806	-		DZA65_RS08560	0.79	+0.0
1,807,806	-		DZA65_RS08560	0.79	-0.0
1,807,806	-		DZA65_RS08560	0.79	-0.6
1,807,995	+				-0.2
1,807,995	+				-0.4
1,807,995	+				-1.0
1,807,996	-				+0.8
1,807,996	-				-0.5
1,808,019	+				+1.5
1,808,020	-				+0.7
1,808,020	-				+0.8
1,808,078	-				+0.3
1,808,202	+		DZA65_RS08565	0.14	+0.4
1,808,202	+		DZA65_RS08565	0.14	-0.0
1,808,202	+		DZA65_RS08565	0.14	+1.3
1,808,202	+		DZA65_RS08565	0.14	+0.3
1,808,203	-		DZA65_RS08565	0.15	-0.1
1,808,342	+		DZA65_RS08565	0.26	-0.6
1,808,343	-		DZA65_RS08565	0.26	-1.1
1,808,343	-		DZA65_RS08565	0.26	-1.7
1,808,343	-		DZA65_RS08565	0.26	-0.0
1,808,343	-		DZA65_RS08565	0.26	+1.3
1,808,382	+		DZA65_RS08565	0.29	-0.4
1,808,473	+		DZA65_RS08565	0.37	-1.0
1,808,473	+		DZA65_RS08565	0.37	-0.4
1,808,473	+		DZA65_RS08565	0.37	-0.9
1,808,590	+		DZA65_RS08565	0.46	+0.3
1,808,590	+		DZA65_RS08565	0.46	-2.3
1,808,590	+		DZA65_RS08565	0.46	+0.7
1,808,591	-				+1.9
1,808,591	-		DZA65_RS08565	0.46	+0.6
1,808,591	-		DZA65_RS08565	0.46	-0.5
1,808,591	-		DZA65_RS08565	0.46	-1.7
1,808,591	-		DZA65_RS08565	0.46	+2.5
1,808,591	-		DZA65_RS08565	0.46	-0.3
1,808,638	+		DZA65_RS08565	0.50	-0.2
1,808,639	-		DZA65_RS08565	0.50	-1.6
1,808,639	-		DZA65_RS08565	0.50	+0.5
1,808,639	-		DZA65_RS08565	0.50	-1.3
1,808,863	+		DZA65_RS08565	0.68	-0.2
1,808,888	+		DZA65_RS08565	0.70	+1.6
1,808,889	-		DZA65_RS08565	0.70	+1.1
1,808,924	-		DZA65_RS08565	0.73	+1.9
1,808,924	-		DZA65_RS08565	0.73	+0.3
1,808,974	+		DZA65_RS08565	0.77	+0.6
1,808,974	+		DZA65_RS08565	0.77	+0.5
1,808,974	+		DZA65_RS08565	0.77	-0.0
1,808,975	-		DZA65_RS08565	0.77	+1.9
1,808,975	-		DZA65_RS08565	0.77	+0.1
1,808,977	+		DZA65_RS08565	0.77	+1.6
1,808,977	+		DZA65_RS08565	0.77	+0.0
1,808,977	+		DZA65_RS08565	0.77	-0.1
1,808,977	+		DZA65_RS08565	0.77	-0.9
1,808,977	+		DZA65_RS08565	0.77	+1.6
1,808,977	+		DZA65_RS08565	0.77	+0.5
1,808,978	-				-1.3
1,808,978	-		DZA65_RS08565	0.78	-0.6
1,808,978	-		DZA65_RS08565	0.78	-1.3
1,808,978	-		DZA65_RS08565	0.78	+0.6
1,808,978	-		DZA65_RS08565	0.78	-1.2