Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08480

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,787,646	+		DZA65_RS08475	0.29	-0.2
1,787,646	+		DZA65_RS08475	0.29	-0.4
1,787,646	+		DZA65_RS08475	0.29	-1.3
1,787,646	+		DZA65_RS08475	0.29	-1.7
1,787,646	+		DZA65_RS08475	0.29	-1.0
1,787,646	+		DZA65_RS08475	0.29	-0.1
1,787,647	-		DZA65_RS08475	0.29	+1.5
1,787,647	-				+1.3
1,787,647	-		DZA65_RS08475	0.29	-2.0
1,787,647	-		DZA65_RS08475	0.29	-0.7
1,787,647	-		DZA65_RS08475	0.29	+0.2
1,787,664	+		DZA65_RS08475	0.31	-1.0
1,787,664	+		DZA65_RS08475	0.31	-0.9
1,787,680	-		DZA65_RS08475	0.33	-0.2
1,787,728	+		DZA65_RS08475	0.38	+0.3
1,787,729	-		DZA65_RS08475	0.38	+0.2
1,787,729	-		DZA65_RS08475	0.38	-1.7
1,787,729	-		DZA65_RS08475	0.38	-2.3
1,787,767	+		DZA65_RS08475	0.42	-0.1
1,787,802	+		DZA65_RS08475	0.46	+1.4
1,787,803	-		DZA65_RS08475	0.46	-2.1
1,787,803	-		DZA65_RS08475	0.46	+0.3
1,787,803	-		DZA65_RS08475	0.46	-0.9
1,787,855	+		DZA65_RS08475	0.52	-0.6
1,787,859	+		DZA65_RS08475	0.52	+0.3
1,787,859	+		DZA65_RS08475	0.52	+0.4
1,787,859	+		DZA65_RS08475	0.52	-0.4
1,787,860	-		DZA65_RS08475	0.53	+0.1
1,787,913	+		DZA65_RS08475	0.58	-1.3
1,787,913	+		DZA65_RS08475	0.58	+0.6
1,787,914	-		DZA65_RS08475	0.58	+0.3
1,787,930	-		DZA65_RS08475	0.60	+0.3
1,787,969	+		DZA65_RS08475	0.64	-1.4
1,787,970	-		DZA65_RS08475	0.64	+0.9
1,788,082	-		DZA65_RS08475	0.77	+0.6
1,788,164	-		DZA65_RS08475	0.86	+0.1
1,788,164	-		DZA65_RS08475	0.86	+0.8
1,788,169	+		DZA65_RS08475	0.86	+1.0
1,788,170	-		DZA65_RS08475	0.86	-1.3
1,788,323	-				+0.6
1,788,328	+				-0.7
1,788,328	+				-0.5
1,788,328	+				+0.1
1,788,328	+				+0.1
1,788,329	-				-0.2
1,788,329	-				+0.6
1,788,329	-				+0.8
1,788,329	-				-0.4
1,788,329	-				-1.3
1,788,329	-				+0.9
1,788,329	-				+0.3
1,788,329	-				+0.3
1,788,329	-				+0.3
1,788,329	-				-1.3
1,788,329	-				-0.4
1,788,380	+				-0.4
1,788,380	+				-0.2
1,788,380	+				-2.5
1,788,381	-				+0.6
1,788,381	-				+1.1
1,788,381	-				+0.3
1,788,393	+				+0.1
1,788,394	-				+0.1
1,788,399	+				-0.3
1,788,399	+				+0.2
1,788,399	+				+0.3
1,788,423	+				+1.3
1,788,423	+				-1.3
1,788,424	-				+0.3
1,788,424	-				+0.7
1,788,424	-				-1.0
1,788,424	-				-0.0
1,788,504	-				+0.3
1,788,539	+				+1.3
1,788,539	+				-0.0
1,788,540	-				-0.6
1,788,540	-				-0.4
1,788,540	-				+1.2
1,788,594	-				-1.0
1,788,659	+		DZA65_RS08480	0.15	+0.6
1,788,659	+		DZA65_RS08480	0.15	+1.5
1,788,660	-		DZA65_RS08480	0.15	-2.5
1,788,695	+		DZA65_RS08480	0.19	+0.1
1,788,696	-		DZA65_RS08480	0.19	+0.3
1,788,727	+		DZA65_RS08480	0.23	-1.7
1,788,728	-		DZA65_RS08480	0.23	-0.1
1,788,728	-		DZA65_RS08480	0.23	+1.1
1,788,728	-		DZA65_RS08480	0.23	+0.6
1,788,728	-		DZA65_RS08480	0.23	+2.3
1,788,735	+		DZA65_RS08480	0.24	+0.3
1,788,735	+		DZA65_RS08480	0.24	+3.1
1,788,735	+		DZA65_RS08480	0.24	+0.1
1,788,735	+		DZA65_RS08480	0.24	-0.3
1,788,735	+		DZA65_RS08480	0.24	+0.2
1,788,735	+		DZA65_RS08480	0.24	-2.1
1,788,735	+		DZA65_RS08480	0.24	-0.9
1,788,735	+		DZA65_RS08480	0.24	+0.7
1,788,735	+		DZA65_RS08480	0.24	-0.8
1,788,735	+		DZA65_RS08480	0.24	+0.6
1,788,735	+		DZA65_RS08480	0.24	-0.2
1,788,735	+		DZA65_RS08480	0.24	+0.8
1,788,735	+		DZA65_RS08480	0.24	-0.7
1,788,735	+		DZA65_RS08480	0.24	-0.5
1,788,735	+		DZA65_RS08480	0.24	-1.5
1,788,736	-		DZA65_RS08480	0.24	-0.4
1,788,736	-		DZA65_RS08480	0.24	+0.2
1,788,736	-		DZA65_RS08480	0.24	-0.3
1,788,736	-		DZA65_RS08480	0.24	-0.7
1,788,736	-		DZA65_RS08480	0.24	+0.9
1,788,736	-		DZA65_RS08480	0.24	-0.9
1,788,736	-		DZA65_RS08480	0.24	+0.4
1,788,736	-		DZA65_RS08480	0.24	-0.1
1,788,736	-		DZA65_RS08480	0.24	+0.9
1,788,736	-		DZA65_RS08480	0.24	-0.9
1,788,736	-		DZA65_RS08480	0.24	-0.5
1,788,817	-		DZA65_RS08480	0.33	+0.1
1,788,944	-		DZA65_RS08480	0.47	-2.5
1,788,973	+		DZA65_RS08480	0.50	+1.1
1,788,973	+		DZA65_RS08480	0.50	+0.5
1,788,974	-		DZA65_RS08480	0.51	-1.7
1,788,974	-		DZA65_RS08480	0.51	+0.5
1,789,039	+		DZA65_RS08480	0.58	+0.3
1,789,039	+		DZA65_RS08480	0.58	-1.3
1,789,039	+		DZA65_RS08480	0.58	-0.0
1,789,039	+		DZA65_RS08480	0.58	-0.1
1,789,039	+		DZA65_RS08480	0.58	-1.7
1,789,040	-		DZA65_RS08480	0.58	-0.9
1,789,040	-		DZA65_RS08480	0.58	+0.3
1,789,040	-		DZA65_RS08480	0.58	-2.3
1,789,085	+		DZA65_RS08480	0.63	-2.2
1,789,178	-		DZA65_RS08480	0.74	+3.0
1,789,178	-		DZA65_RS08480	0.74	+0.5
1,789,178	-		DZA65_RS08480	0.74	-1.3
1,789,178	-		DZA65_RS08480	0.74	-1.3
1,789,228	+		DZA65_RS08480	0.79	+0.8
1,789,240	+		DZA65_RS08480	0.81	-1.3
1,789,288	+		DZA65_RS08480	0.86	+0.3
1,789,288	+		DZA65_RS08480	0.86	-1.6
1,789,289	-		DZA65_RS08480	0.86	-1.3
1,789,292	+		DZA65_RS08480	0.86	-1.1
1,789,292	+		DZA65_RS08480	0.86	-0.4
1,789,293	-		DZA65_RS08480	0.87	+0.3
1,789,293	-		DZA65_RS08480	0.87	-0.3
1,789,293	-		DZA65_RS08480	0.87	-0.2
1,789,397	+				+0.3
1,789,401	+				-0.2
1,789,401	+				-1.3
1,789,401	+				+0.4
1,789,401	+				-0.2
1,789,401	+				-0.1
1,789,401	+				+0.2
1,789,401	+				-1.3
1,789,402	-				+0.3
1,789,402	-				-0.8
1,789,402	-				+0.3
1,789,402	-				-0.8
1,789,402	-				-0.0
1,789,402	-				-0.3
1,789,402	-				+0.3
1,789,402	-				-0.7
1,789,402	-				+0.2
1,789,402	-				-2.0
1,789,402	-				-0.3
1,789,402	-				+1.5
1,789,515	+				+0.7
1,789,515	+				+0.5
1,789,515	+				-0.5
1,789,515	+				+0.8
1,789,515	+				-0.4
1,789,515	+				-0.9
1,789,515	+				+0.7
1,789,515	+				-1.3
1,789,515	+				-0.2
1,789,515	+				+0.8
1,789,515	+				+1.4
1,789,515	+				+0.1
1,789,515	+				+0.8
1,789,516	-				+0.8
1,789,516	-				-1.0
1,789,516	-				-0.4
1,789,516	-				-1.7
1,789,516	-				+0.6
1,789,577	+		DZA65_RS08485	0.13	-0.0
1,789,577	+		DZA65_RS08485	0.13	-0.4
1,789,577	+		DZA65_RS08485	0.13	-0.4
1,789,577	+		DZA65_RS08485	0.13	+0.9
1,789,586	+		DZA65_RS08485	0.15	-0.7
1,789,586	+		DZA65_RS08485	0.15	+1.1
1,789,587	-		DZA65_RS08485	0.15	+0.9
1,789,629	+		DZA65_RS08485	0.22	-0.4
1,789,630	-		DZA65_RS08485	0.22	+0.9
1,789,630	-		DZA65_RS08485	0.22	-1.3
1,789,680	+				+1.1
1,789,680	+		DZA65_RS08485	0.30	+0.9
1,789,680	+		DZA65_RS08485	0.30	+0.2
1,789,680	+		DZA65_RS08485	0.30	-0.3
1,789,680	+		DZA65_RS08485	0.30	-1.3
1,789,680	+		DZA65_RS08485	0.30	+0.9
1,789,680	+		DZA65_RS08485	0.30	+0.7
1,789,681	-		DZA65_RS08485	0.31	+0.7
1,789,681	-		DZA65_RS08485	0.31	+0.2
1,789,681	-		DZA65_RS08485	0.31	-0.5
1,789,681	-		DZA65_RS08485	0.31	+1.6
1,789,681	-				-0.7
1,789,681	-		DZA65_RS08485	0.31	-0.7
1,789,681	-		DZA65_RS08485	0.31	+0.3
1,789,681	-		DZA65_RS08485	0.31	-0.0
1,789,681	-		DZA65_RS08485	0.31	-1.5
1,789,681	-		DZA65_RS08485	0.31	-1.1
1,789,681	-		DZA65_RS08485	0.31	-0.1
1,789,682	+		DZA65_RS08485	0.31	-1.7
1,789,682	+		DZA65_RS08485	0.31	-0.1
1,789,682	+		DZA65_RS08485	0.31	+1.2
1,789,682	+		DZA65_RS08485	0.31	-0.3
1,789,682	+		DZA65_RS08485	0.31	+1.2
1,789,682	+		DZA65_RS08485	0.31	-0.0
1,789,682	+		DZA65_RS08485	0.31	+0.9
1,789,682	+		DZA65_RS08485	0.31	+0.7
1,789,682	+		DZA65_RS08485	0.31	-0.3
1,789,682	+		DZA65_RS08485	0.31	+0.9
1,789,683	-		DZA65_RS08485	0.31	+0.9
1,789,683	-		DZA65_RS08485	0.31	-0.5
1,789,683	-		DZA65_RS08485	0.31	+0.5
1,789,683	-		DZA65_RS08485	0.31	-0.7
1,789,721	+		DZA65_RS08485	0.37	+2.0
1,789,722	-		DZA65_RS08485	0.38	-1.1
1,789,722	-		DZA65_RS08485	0.38	-0.3
1,789,722	-		DZA65_RS08485	0.38	-1.3
1,789,762	+		DZA65_RS08485	0.44	-0.2
1,789,763	-		DZA65_RS08485	0.44	+0.3
1,789,763	-		DZA65_RS08485	0.44	-1.3
1,789,825	+		DZA65_RS08485	0.55	-0.7
1,789,825	+		DZA65_RS08485	0.55	-0.4
1,789,826	-		DZA65_RS08485	0.55	-0.7
1,789,826	-		DZA65_RS08485	0.55	-0.7
1,789,826	-		DZA65_RS08485	0.55	-1.7
1,790,075	+				-1.0
1,790,076	-				+0.5
1,790,104	+				-0.7
1,790,130	+				+1.4
1,790,130	+				+0.0
1,790,130	+				-0.8
1,790,130	+				-0.8
1,790,131	-				+0.1
1,790,131	-				-0.4
1,790,131	-				-0.9
1,790,142	+				+0.1
1,790,142	+				+0.3
1,790,142	+				+0.1
1,790,143	-				-1.3
1,790,143	-				+0.9
1,790,143	-				-2.9
1,790,143	-				-0.4
1,790,158	+				+0.1
1,790,194	-				-1.1
1,790,236	-				+1.9
1,790,237	+				-1.7
1,790,237	+				+1.0
1,790,238	-				+1.8
1,790,238	-				-2.1
1,790,238	-				+0.4
1,790,238	-				-1.3
1,790,238	-				+1.1
1,790,238	-				-0.1
1,790,244	+				+0.3
1,790,245	-				-0.1
1,790,270	+				+0.1
1,790,270	+				-0.4
1,790,310	+				+0.1
1,790,310	+				-1.0
1,790,310	+				-0.9
1,790,310	+				+0.5
1,790,310	+				+1.7
1,790,310	+				+0.1
1,790,310	+				-0.3
1,790,310	+				+2.2
1,790,311	-				-2.3
1,790,311	-				-1.4
1,790,311	-				-0.0
1,790,311	-				-0.4
1,790,411	+		DZA65_RS08490	0.33	+0.9
1,790,411	+		DZA65_RS08490	0.33	-0.7
1,790,411	+		DZA65_RS08490	0.33	+0.4
1,790,411	+		DZA65_RS08490	0.33	-0.2