Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08390

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS08385 and DZA65_RS08390 are separated by 51 nucleotidesDZA65_RS08390 and DZA65_RS08395 overlap by 4 nucleotidesDZA65_RS08395 and DZA65_RS08400 are separated by 3 nucleotides DZA65_RS08385: DZA65_RS08385 - nucleoside hydrolase, at 1,768,917 to 1,769,885 _RS08385 DZA65_RS08390: DZA65_RS08390 - ABC transporter permease, at 1,769,937 to 1,770,911 _RS08390 DZA65_RS08395: DZA65_RS08395 - ABC transporter permease, at 1,770,908 to 1,771,828 _RS08395 DZA65_RS08400: DZA65_RS08400 - ABC transporter ATP-binding protein, at 1,771,832 to 1,773,625 _RS08400 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1768.938 kb on - strandat 1768.938 kb on - strandat 1768.938 kb on - strandat 1768.957 kb on + strandat 1768.958 kb on - strandat 1769.051 kb on + strand, within DZA65_RS08385at 1769.052 kb on - strand, within DZA65_RS08385at 1769.148 kb on + strand, within DZA65_RS08385at 1769.157 kb on + strand, within DZA65_RS08385at 1769.157 kb on + strand, within DZA65_RS08385at 1769.157 kb on + strand, within DZA65_RS08385at 1769.158 kb on - strand, within DZA65_RS08385at 1769.158 kb on - strand, within DZA65_RS08385at 1769.158 kb on - strand, within DZA65_RS08385at 1769.238 kb on - strand, within DZA65_RS08385at 1769.282 kb on + strand, within DZA65_RS08385at 1769.426 kb on + strand, within DZA65_RS08385at 1769.426 kb on + strand, within DZA65_RS08385at 1769.426 kb on + strand, within DZA65_RS08385at 1769.426 kb on + strand, within DZA65_RS08385at 1769.426 kb on + strand, within DZA65_RS08385at 1769.427 kb on - strand, within DZA65_RS08385at 1769.427 kb on - strand, within DZA65_RS08385at 1769.427 kb on - strand, within DZA65_RS08385at 1769.427 kb on - strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.430 kb on + strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.431 kb on - strand, within DZA65_RS08385at 1769.668 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.741 kb on + strand, within DZA65_RS08385at 1769.742 kb on - strand, within DZA65_RS08385at 1769.742 kb on - strand, within DZA65_RS08385at 1769.742 kb on - strand, within DZA65_RS08385at 1769.742 kb on - strand, within DZA65_RS08385at 1769.757 kb on + strand, within DZA65_RS08385at 1769.767 kb on + strand, within DZA65_RS08385at 1769.883 kb on + strandat 1769.883 kb on + strandat 1769.883 kb on + strandat 1769.884 kb on - strandat 1769.884 kb on - strandat 1769.884 kb on - strandat 1769.890 kb on + strandat 1769.890 kb on + strandat 1769.906 kb on + strandat 1769.906 kb on + strandat 1769.906 kb on + strandat 1769.907 kb on - strandat 1769.920 kb on - strandat 1769.978 kb on - strandat 1770.018 kb on + strandat 1770.126 kb on + strand, within DZA65_RS08390at 1770.126 kb on + strand, within DZA65_RS08390at 1770.126 kb on + strand, within DZA65_RS08390at 1770.127 kb on - strand, within DZA65_RS08390at 1770.127 kb on - strand, within DZA65_RS08390at 1770.183 kb on - strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.215 kb on + strand, within DZA65_RS08390at 1770.216 kb on - strand, within DZA65_RS08390at 1770.216 kb on - strand, within DZA65_RS08390at 1770.216 kb on - strand, within DZA65_RS08390at 1770.216 kb on - strand, within DZA65_RS08390at 1770.353 kb on + strand, within DZA65_RS08390at 1770.353 kb on + strand, within DZA65_RS08390at 1770.354 kb on - strand, within DZA65_RS08390at 1770.536 kb on - strand, within DZA65_RS08390at 1770.536 kb on - strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.591 kb on + strand, within DZA65_RS08390at 1770.592 kb on - strand, within DZA65_RS08390at 1770.592 kb on - strand, within DZA65_RS08390at 1770.592 kb on - strand, within DZA65_RS08390at 1770.592 kb on - strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.643 kb on + strand, within DZA65_RS08390at 1770.644 kb on - strandat 1770.644 kb on - strand, within DZA65_RS08390at 1770.644 kb on - strand, within DZA65_RS08390at 1770.644 kb on - strand, within DZA65_RS08390at 1770.664 kb on + strand, within DZA65_RS08390at 1770.677 kb on + strand, within DZA65_RS08390at 1770.678 kb on - strand, within DZA65_RS08390at 1770.738 kb on + strand, within DZA65_RS08390at 1770.738 kb on + strand, within DZA65_RS08390at 1770.739 kb on - strand, within DZA65_RS08390at 1770.739 kb on - strand, within DZA65_RS08390at 1770.739 kb on - strand, within DZA65_RS08390at 1770.810 kb on + strand, within DZA65_RS08390at 1770.811 kb on - strand, within DZA65_RS08390at 1770.867 kb on + strandat 1770.867 kb on + strandat 1770.868 kb on - strandat 1770.935 kb on - strandat 1770.976 kb on + strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1771.152 kb on + strand, within DZA65_RS08395at 1771.152 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.209 kb on - strand, within DZA65_RS08395at 1771.330 kb on + strand, within DZA65_RS08395at 1771.331 kb on - strand, within DZA65_RS08395at 1771.362 kb on + strand, within DZA65_RS08395at 1771.362 kb on + strand, within DZA65_RS08395at 1771.363 kb on - strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.414 kb on + strand, within DZA65_RS08395at 1771.445 kb on + strand, within DZA65_RS08395at 1771.445 kb on + strand, within DZA65_RS08395at 1771.449 kb on - strand, within DZA65_RS08395at 1771.449 kb on - strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.600 kb on + strand, within DZA65_RS08395at 1771.600 kb on + strandat 1771.607 kb on + strand, within DZA65_RS08395at 1771.703 kb on + strand, within DZA65_RS08395at 1771.703 kb on + strand, within DZA65_RS08395at 1771.704 kb on - strand, within DZA65_RS08395at 1771.811 kb on - strandat 1771.811 kb on - strandat 1771.906 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
1,768,938 - -0.2
1,768,938 - +1.5
1,768,938 - -0.2
1,768,957 + -0.4
1,768,958 - -1.8
1,769,051 + DZA65_RS08385 0.14 +0.5
1,769,052 - DZA65_RS08385 0.14 +1.3
1,769,148 + DZA65_RS08385 0.24 -1.1
1,769,157 + DZA65_RS08385 0.25 +0.9
1,769,157 + DZA65_RS08385 0.25 -0.1
1,769,157 + DZA65_RS08385 0.25 +0.5
1,769,158 - DZA65_RS08385 0.25 +0.1
1,769,158 - DZA65_RS08385 0.25 +0.8
1,769,158 - DZA65_RS08385 0.25 -0.7
1,769,238 - DZA65_RS08385 0.33 -2.9
1,769,282 + DZA65_RS08385 0.38 -0.7
1,769,426 + DZA65_RS08385 0.53 -2.1
1,769,426 + DZA65_RS08385 0.53 +0.5
1,769,426 + DZA65_RS08385 0.53 -0.3
1,769,426 + DZA65_RS08385 0.53 -2.4
1,769,426 + DZA65_RS08385 0.53 -0.7
1,769,427 - DZA65_RS08385 0.53 -1.3
1,769,427 - DZA65_RS08385 0.53 +0.3
1,769,427 - DZA65_RS08385 0.53 +1.3
1,769,427 - DZA65_RS08385 0.53 +1.3
1,769,430 + DZA65_RS08385 0.53 -0.5
1,769,430 + DZA65_RS08385 0.53 +1.6
1,769,430 + DZA65_RS08385 0.53 -0.1
1,769,430 + DZA65_RS08385 0.53 +0.4
1,769,430 + DZA65_RS08385 0.53 -1.1
1,769,430 + DZA65_RS08385 0.53 +0.0
1,769,430 + DZA65_RS08385 0.53 +0.1
1,769,430 + DZA65_RS08385 0.53 -1.5
1,769,430 + DZA65_RS08385 0.53 -0.1
1,769,431 - DZA65_RS08385 0.53 -1.0
1,769,431 - DZA65_RS08385 0.53 +0.7
1,769,431 - DZA65_RS08385 0.53 -0.0
1,769,431 - DZA65_RS08385 0.53 +1.1
1,769,431 - DZA65_RS08385 0.53 -0.5
1,769,431 - DZA65_RS08385 0.53 +0.3
1,769,431 - DZA65_RS08385 0.53 +0.4
1,769,431 - DZA65_RS08385 0.53 -0.9
1,769,431 - DZA65_RS08385 0.53 -1.7
1,769,431 - DZA65_RS08385 0.53 -2.3
1,769,431 - DZA65_RS08385 0.53 -0.4
1,769,431 - DZA65_RS08385 0.53 -0.5
1,769,668 + DZA65_RS08385 0.78 -0.1
1,769,741 + DZA65_RS08385 0.85 +0.3
1,769,741 + DZA65_RS08385 0.85 +0.7
1,769,741 + DZA65_RS08385 0.85 +0.6
1,769,741 + DZA65_RS08385 0.85 -1.0
1,769,741 + DZA65_RS08385 0.85 -1.3
1,769,741 + DZA65_RS08385 0.85 +1.7
1,769,742 - DZA65_RS08385 0.85 -0.4
1,769,742 - DZA65_RS08385 0.85 +0.6
1,769,742 - DZA65_RS08385 0.85 +0.5
1,769,742 - DZA65_RS08385 0.85 +0.1
1,769,757 + DZA65_RS08385 0.87 +0.2
1,769,767 + DZA65_RS08385 0.88 -0.7
1,769,883 + +1.1
1,769,883 + -0.2
1,769,883 + +0.3
1,769,884 - -1.7
1,769,884 - -0.9
1,769,884 - -0.7
1,769,890 + +0.8
1,769,890 + +0.7
1,769,906 + +1.7
1,769,906 + -0.8
1,769,906 + -0.3
1,769,907 - +0.4
1,769,920 - +0.1
1,769,978 - -0.6
1,770,018 + +0.2
1,770,126 + DZA65_RS08390 0.19 -1.7
1,770,126 + DZA65_RS08390 0.19 +0.2
1,770,126 + DZA65_RS08390 0.19 -0.4
1,770,127 - DZA65_RS08390 0.19 -0.8
1,770,127 - DZA65_RS08390 0.19 +0.3
1,770,183 - DZA65_RS08390 0.25 +1.3
1,770,215 + DZA65_RS08390 0.29 -1.2
1,770,215 + DZA65_RS08390 0.29 -1.4
1,770,215 + DZA65_RS08390 0.29 -1.0
1,770,215 + DZA65_RS08390 0.29 -2.5
1,770,215 + DZA65_RS08390 0.29 -1.0
1,770,215 + DZA65_RS08390 0.29 +0.3
1,770,216 - DZA65_RS08390 0.29 +0.3
1,770,216 - DZA65_RS08390 0.29 +0.9
1,770,216 - DZA65_RS08390 0.29 -0.4
1,770,216 - DZA65_RS08390 0.29 +0.1
1,770,353 + DZA65_RS08390 0.43 -0.2
1,770,353 + DZA65_RS08390 0.43 +0.0
1,770,354 - DZA65_RS08390 0.43 +0.3
1,770,536 - DZA65_RS08390 0.61 -0.9
1,770,536 - DZA65_RS08390 0.61 +0.0
1,770,591 + DZA65_RS08390 0.67 -0.2
1,770,591 + DZA65_RS08390 0.67 +0.3
1,770,591 + DZA65_RS08390 0.67 +0.6
1,770,591 + DZA65_RS08390 0.67 +0.3
1,770,591 + DZA65_RS08390 0.67 +0.3
1,770,591 + DZA65_RS08390 0.67 -2.3
1,770,591 + DZA65_RS08390 0.67 +0.1
1,770,591 + DZA65_RS08390 0.67 +0.2
1,770,591 + DZA65_RS08390 0.67 +1.6
1,770,592 - DZA65_RS08390 0.67 -0.9
1,770,592 - DZA65_RS08390 0.67 +1.2
1,770,592 - DZA65_RS08390 0.67 -0.2
1,770,592 - DZA65_RS08390 0.67 -2.0
1,770,643 + DZA65_RS08390 0.72 +0.2
1,770,643 + DZA65_RS08390 0.72 -2.3
1,770,643 + DZA65_RS08390 0.72 +0.3
1,770,643 + DZA65_RS08390 0.72 -0.2
1,770,643 + DZA65_RS08390 0.72 +1.1
1,770,643 + DZA65_RS08390 0.72 -0.5
1,770,643 + DZA65_RS08390 0.72 +0.9
1,770,643 + DZA65_RS08390 0.72 +0.7
1,770,644 - -0.1
1,770,644 - DZA65_RS08390 0.73 -0.9
1,770,644 - DZA65_RS08390 0.73 -1.1
1,770,644 - DZA65_RS08390 0.73 +0.4
1,770,664 + DZA65_RS08390 0.75 -1.8
1,770,677 + DZA65_RS08390 0.76 -0.3
1,770,678 - DZA65_RS08390 0.76 +0.1
1,770,738 + DZA65_RS08390 0.82 -2.0
1,770,738 + DZA65_RS08390 0.82 -1.0
1,770,739 - DZA65_RS08390 0.82 -1.1
1,770,739 - DZA65_RS08390 0.82 +0.6
1,770,739 - DZA65_RS08390 0.82 -0.1
1,770,810 + DZA65_RS08390 0.90 -2.3
1,770,811 - DZA65_RS08390 0.90 -0.7
1,770,867 + -0.7
1,770,867 + -0.2
1,770,868 - +0.7
1,770,935 - -0.0
1,770,976 + +0.6
1,770,977 - -1.4
1,770,977 - -0.9
1,770,977 - +0.1
1,770,977 - +1.5
1,770,977 - -1.0
1,770,977 - +1.1
1,771,152 + DZA65_RS08395 0.26 +1.1
1,771,152 + DZA65_RS08395 0.26 -0.2
1,771,157 + DZA65_RS08395 0.27 -2.5
1,771,157 + DZA65_RS08395 0.27 -0.1
1,771,157 + DZA65_RS08395 0.27 -1.7
1,771,157 + DZA65_RS08395 0.27 -0.6
1,771,158 - DZA65_RS08395 0.27 +0.3
1,771,158 - DZA65_RS08395 0.27 -0.0
1,771,158 - DZA65_RS08395 0.27 -1.3
1,771,209 - DZA65_RS08395 0.33 -1.7
1,771,330 + DZA65_RS08395 0.46 +0.5
1,771,331 - DZA65_RS08395 0.46 -2.0
1,771,362 + DZA65_RS08395 0.49 -0.7
1,771,362 + DZA65_RS08395 0.49 -0.7
1,771,363 - DZA65_RS08395 0.49 -0.3
1,771,366 + DZA65_RS08395 0.50 +1.5
1,771,366 + DZA65_RS08395 0.50 +0.6
1,771,366 + DZA65_RS08395 0.50 -0.1
1,771,367 - DZA65_RS08395 0.50 -1.5
1,771,367 - DZA65_RS08395 0.50 -1.2
1,771,367 - DZA65_RS08395 0.50 -0.0
1,771,414 + DZA65_RS08395 0.55 +0.1
1,771,445 + DZA65_RS08395 0.58 -0.5
1,771,445 + DZA65_RS08395 0.58 -1.2
1,771,449 - DZA65_RS08395 0.59 -0.9
1,771,449 - DZA65_RS08395 0.59 +0.1
1,771,496 + DZA65_RS08395 0.64 -0.9
1,771,496 + DZA65_RS08395 0.64 -0.2
1,771,496 + DZA65_RS08395 0.64 -2.1
1,771,496 + DZA65_RS08395 0.64 +0.3
1,771,496 + DZA65_RS08395 0.64 -0.2
1,771,497 - DZA65_RS08395 0.64 -0.9
1,771,497 - DZA65_RS08395 0.64 +0.3
1,771,497 - DZA65_RS08395 0.64 -1.0
1,771,497 - DZA65_RS08395 0.64 -0.0
1,771,497 - DZA65_RS08395 0.64 +0.3
1,771,497 - DZA65_RS08395 0.64 +0.7
1,771,497 - DZA65_RS08395 0.64 +0.1
1,771,497 - DZA65_RS08395 0.64 +0.7
1,771,600 + DZA65_RS08395 0.75 -0.5
1,771,600 + -0.3
1,771,607 + DZA65_RS08395 0.76 -0.1
1,771,703 + DZA65_RS08395 0.86 +2.3
1,771,703 + DZA65_RS08395 0.86 -0.7
1,771,704 - DZA65_RS08395 0.86 -0.7
1,771,811 - -2.3
1,771,811 - -0.0
1,771,906 - +0.1

Or see this region's nucleotide sequence