Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08260

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,736,605	+		DZA65_RS08250	0.86	-0.8
1,736,606	-		DZA65_RS08250	0.86	+0.1
1,736,606	-		DZA65_RS08250	0.86	-0.7
1,736,606	-		DZA65_RS08250	0.86	-0.9
1,736,659	+		DZA65_RS08250	0.88	+0.8
1,736,660	-		DZA65_RS08250	0.88	-0.3
1,736,711	+		DZA65_RS08250	0.89	-0.2
1,736,712	-		DZA65_RS08250	0.89	-1.3
1,736,770	+				-0.7
1,736,770	+				+1.3
1,736,770	+				+0.3
1,736,770	+				+0.2
1,736,770	+				+0.3
1,736,770	+				+0.0
1,736,770	+				+0.7
1,736,771	-				+0.8
1,736,771	-				+0.3
1,736,771	-				+0.0
1,736,771	-				+0.8
1,736,771	-				+0.0
1,736,771	-				+0.3
1,736,771	-				-1.5
1,736,771	-				-0.9
1,736,771	-				-0.2
1,736,771	-				-0.1
1,736,774	+				+0.4
1,736,774	+				-0.7
1,736,775	-				-0.7
1,736,775	-				-0.1
1,736,775	-				+0.0
1,736,785	+				-1.3
1,736,785	+				-1.3
1,736,785	+				-2.7
1,736,785	+				+0.6
1,736,785	+				+0.1
1,736,785	+				+0.3
1,736,785	+				+0.7
1,736,785	+				-2.0
1,736,785	+				-1.0
1,736,785	+				+0.1
1,736,786	-				+0.2
1,736,786	-				+0.5
1,736,786	-				-0.3
1,736,786	-				+1.0
1,736,786	-				-1.5
1,736,786	-				+0.2
1,736,786	-				-1.0
1,736,786	-				+0.6
1,736,801	-				-1.1
1,736,821	+				-1.0
1,736,822	-				-1.5
1,736,822	-				+0.7
1,736,840	+				-0.9
1,736,841	-				-0.3
1,736,841	-				-0.5
1,736,841	-				+0.3
1,736,849	+				-0.9
1,736,849	+				-0.5
1,736,849	+				+0.2
1,736,850	-				+1.5
1,736,925	+				-0.1
1,736,925	+				-0.0
1,736,925	+				+0.3
1,736,925	+				-2.7
1,736,926	-				-1.0
1,736,926	-				+0.2
1,736,926	-				-1.0
1,736,946	-				-0.7
1,736,946	-				-1.5
1,736,972	-				-2.4
1,736,988	+				-1.1
1,736,988	+				-0.2
1,736,988	+				-1.1
1,736,988	+				+0.0
1,736,989	-				-1.0
1,736,989	-				+1.6
1,736,989	-				+0.6
1,736,989	-				+0.7
1,736,989	-				+1.0
1,736,989	-				+0.7
1,736,989	-				-0.4
1,736,989	-				+0.1
1,736,989	-				-1.7
1,737,098	+				-0.5
1,737,098	+				-0.7
1,737,098	+				+0.4
1,737,098	+				+0.3
1,737,098	+				-0.3
1,737,099	-				-0.2
1,737,099	-				+0.7
1,737,100	+				-0.2
1,737,101	-				+0.6
1,737,128	-				-0.4
1,737,129	+				+0.0
1,737,129	+				+0.0
1,737,129	+				-2.2
1,737,129	+				-0.2
1,737,129	+				+0.3
1,737,130	-				+0.5
1,737,130	-				-0.9
1,737,130	-				-1.7
1,737,130	-				-0.4
1,737,130	-				+0.4
1,737,130	-				+1.9
1,737,130	-				+0.6
1,737,130	-				-2.6
1,737,130	-				+0.9
1,737,130	-				+0.8
1,737,130	-				-0.6
1,737,130	-				+0.3
1,737,130	-				-0.5
1,737,130	-				-0.2
1,737,130	-				+0.9
1,737,130	-				+0.8
1,737,130	-				+0.0
1,737,194	+				-1.0
1,737,194	+				-0.6
1,737,194	+				+1.2
1,737,194	+				+1.3
1,737,194	+				-1.0
1,737,195	-				+0.3
1,737,210	+				-0.3
1,737,211	-				-2.4
1,737,211	-				+0.0
1,737,250	+				+0.2
1,737,516	-				+0.9
1,737,528	-				-1.0
1,737,528	-				-0.1
1,737,528	-				+0.6
1,737,528	-				+0.3
1,737,562	+				+0.0
1,737,562	+				-0.7
1,737,563	-				+0.3
1,737,563	-				-0.3
1,737,598	-				-0.4
1,737,602	+				-0.6
1,737,602	+				+2.1
1,737,603	-				-0.5
1,737,668	-				+0.3
1,737,692	+				+0.1
1,737,692	+				-0.2
1,737,692	+				+0.1
1,737,693	-				-2.7
1,737,762	+		DZA65_RS08260	0.11	-0.7
1,737,762	+		DZA65_RS08260	0.11	-1.3
1,737,762	+		DZA65_RS08260	0.11	+0.3
1,737,763	-		DZA65_RS08260	0.11	-0.2
1,737,763	-		DZA65_RS08260	0.11	+0.3
1,737,763	-		DZA65_RS08260	0.11	-0.9
1,737,763	-		DZA65_RS08260	0.11	-0.1
1,738,061	+		DZA65_RS08260	0.33	-0.9
1,738,212	+		DZA65_RS08260	0.43	-1.9
1,738,212	+		DZA65_RS08260	0.43	-3.5
1,738,212	+		DZA65_RS08260	0.43	-0.1
1,738,213	-		DZA65_RS08260	0.43	-1.7
1,738,213	-		DZA65_RS08260	0.43	+1.9
1,738,213	-		DZA65_RS08260	0.43	+0.0
1,738,213	-		DZA65_RS08260	0.43	+1.0
1,738,213	-		DZA65_RS08260	0.43	+1.3
1,738,213	-		DZA65_RS08260	0.43	-0.7
1,738,213	-		DZA65_RS08260	0.43	-0.1
1,738,235	+		DZA65_RS08260	0.45	+1.2
1,738,235	+		DZA65_RS08260	0.45	+1.6
1,738,235	+		DZA65_RS08260	0.45	-0.3
1,738,236	-		DZA65_RS08260	0.45	+0.1
1,738,236	-		DZA65_RS08260	0.45	-2.3
1,738,236	-		DZA65_RS08260	0.45	+0.3
1,738,245	-		DZA65_RS08260	0.46	-0.3
1,738,284	+		DZA65_RS08260	0.48	-0.2
1,738,319	+		DZA65_RS08260	0.51	+0.8
1,738,428	+		DZA65_RS08260	0.59	-0.0
1,738,511	+		DZA65_RS08260	0.64	+0.3
1,738,511	+		DZA65_RS08260	0.64	-0.5
1,738,512	-		DZA65_RS08260	0.64	+1.0
1,738,643	+		DZA65_RS08260	0.74	-0.4
1,738,643	+		DZA65_RS08260	0.74	-1.1
1,738,644	-		DZA65_RS08260	0.74	+0.5
1,738,644	-		DZA65_RS08260	0.74	-0.4
1,738,644	-		DZA65_RS08260	0.74	-0.5
1,738,720	-		DZA65_RS08260	0.79	-0.3
1,738,746	+		DZA65_RS08260	0.81	+0.8
1,738,769	+		DZA65_RS08260	0.83	-1.2
1,738,769	+		DZA65_RS08260	0.83	+2.1
1,738,770	-		DZA65_RS08260	0.83	+1.9
1,738,802	+		DZA65_RS08260	0.85	-0.1
1,738,803	-		DZA65_RS08260	0.85	-0.8
1,738,814	+		DZA65_RS08260	0.86	+0.8
1,738,814	+		DZA65_RS08260	0.86	+0.3
1,738,814	+		DZA65_RS08260	0.86	-1.5
1,738,814	+		DZA65_RS08260	0.86	-1.5
1,738,814	+		DZA65_RS08260	0.86	-0.1
1,738,815	-		DZA65_RS08260	0.86	-2.0
1,738,815	-		DZA65_RS08260	0.86	+0.9
1,738,815	-		DZA65_RS08260	0.86	-0.9
1,738,815	-		DZA65_RS08260	0.86	+0.4
1,738,815	-		DZA65_RS08260	0.86	-1.0
1,738,817	+		DZA65_RS08260	0.86	-1.3
1,738,818	-		DZA65_RS08260	0.86	-1.4
1,738,818	-		DZA65_RS08260	0.86	-1.9
1,738,866	+		DZA65_RS08260	0.90	+1.1
1,738,866	+		DZA65_RS08260	0.90	-0.0
1,738,869	+		DZA65_RS08260	0.90	+0.3
1,738,869	+		DZA65_RS08260	0.90	-1.3
1,738,869	+		DZA65_RS08260	0.90	+0.0
1,738,869	+		DZA65_RS08260	0.90	+0.5
1,738,869	+		DZA65_RS08260	0.90	+0.4
1,738,870	-		DZA65_RS08260	0.90	-0.7
1,738,870	-		DZA65_RS08260	0.90	+1.2
1,738,886	-				-0.1
1,738,936	+				-1.7
1,739,035	+				-0.7
1,739,035	+				-0.9
1,739,037	+				-1.3
1,739,038	-				+1.0
1,739,055	-				+0.7
1,739,055	-				-0.3
1,739,055	-				-0.1
1,739,104	+				+0.1
1,739,104	+				-0.2
1,739,105	-				-0.0
1,739,113	+				+0.5
1,739,114	-				-0.7
1,739,114	-				-0.4
1,739,115	+				-0.0
1,739,116	-				-0.8
1,739,118	+				+0.5
1,739,118	+				+0.4
1,739,118	+				-0.9
1,739,118	+				-0.5
1,739,119	-				-0.1
1,739,119	-				-0.4
1,739,119	-				-0.0
1,739,119	-				-0.9
1,739,119	-				-0.7
1,739,119	-				+0.8
1,739,119	-				-1.6
1,739,119	-				-0.0
1,739,119	-				-0.8
1,739,119	-				-0.5
1,739,119	-				+0.5
1,739,119	-				-1.6
1,739,119	-				-1.3
1,739,119	-				+0.9
1,739,126	+				-0.7
1,739,126	+				-0.2
1,739,126	+				+0.5
1,739,127	-				-0.0
1,739,128	+				+0.0
1,739,128	+				-0.2
1,739,129	-				-0.2
1,739,129	-				+0.3
1,739,129	-				-1.5
1,739,132	+				-0.7
1,739,132	+				+0.3
1,739,132	+				+1.3
1,739,132	+				-0.0
1,739,133	-				+0.1
1,739,133	-				+0.6
1,739,133	-				+0.9
1,739,133	-				-0.4
1,739,134	+				-1.5
1,739,134	+				+0.8
1,739,134	+				-2.1
1,739,134	+				+0.2
1,739,134	+				-0.5
1,739,135	-				-1.9
1,739,135	-				-0.7
1,739,135	-				-1.9
1,739,137	+				+0.9
1,739,137	+				+0.8
1,739,137	+				-2.3
1,739,137	+				-0.7
1,739,138	-				+0.3
1,739,138	-				-1.6
1,739,138	-				-1.1
1,739,138	-				+0.6
1,739,138	-				+0.3
1,739,138	-				-0.7
1,739,138	-				-1.3
1,739,138	-				+1.0
1,739,145	+				+0.9
1,739,145	+				-2.5
1,739,147	+				+0.1
1,739,147	+				-0.3
1,739,148	-				+0.3
1,739,148	-				-1.1
1,739,151	+				-1.3
1,739,151	+				+1.0
1,739,152	-				-0.5
1,739,152	-				-0.1
1,739,156	+				+0.9
1,739,156	+				-0.1
1,739,156	+				+0.5
1,739,156	+				-0.2
1,739,156	+				-0.0
1,739,157	-				-1.0
1,739,157	-				-0.6
1,739,157	-				+1.6
1,739,157	-				+0.7
1,739,157	-				-0.4
1,739,157	-				-0.2
1,739,164	+				+1.8
1,739,164	+				-0.4
1,739,166	+				+0.6
1,739,166	+				-1.5
1,739,167	-				-1.0
1,739,167	-				+0.8
1,739,167	-				-0.0
1,739,170	+				-0.8
1,739,170	+				+0.7
1,739,170	+				+0.3
1,739,171	-				+0.5
1,739,171	-				-1.1
1,739,184	-				+0.2
1,739,185	+				-1.8
1,739,185	+				+0.3
1,739,185	+				-1.7
1,739,185	+				-0.2
1,739,185	+				-0.7
1,739,186	-				-1.3
1,739,186	-				-1.9
1,739,186	-				-0.2
1,739,186	-				+2.6
1,739,186	-				-1.7
1,739,186	-				+1.1
1,739,186	-				-0.4
1,739,189	+				-2.0
1,739,189	+				-1.0
1,739,231	-				+0.3
1,739,231	-				-0.0
1,739,231	-				-0.5
1,739,235	+				+0.3
1,739,235	+				+0.1
1,739,271	-				-0.6
1,739,271	-				-2.9
1,739,271	-				+2.3
1,739,277	+				+0.5
1,739,277	+				+1.5
1,739,278	-				-1.0
1,739,278	-				+0.3
1,739,383	+				-0.3
1,739,383	+				+0.9
1,739,383	+				+2.4
1,739,383	+				-1.2
1,739,384	-				+0.9
1,739,384	-				+0.4
1,739,397	-				-1.6
1,739,397	-				-0.7
1,739,407	-				+0.3
1,739,422	+				-0.7
1,739,422	+				-0.7
1,739,423	-				-1.3
1,739,423	-				-0.7
1,739,467	+				-2.9
1,739,484	+				-0.3
1,739,484	+				+1.9
1,739,573	+				-0.4
1,739,574	-				-1.7
1,739,838	+		DZA65_RS08265	0.21	+2.3
1,739,838	+		DZA65_RS08265	0.21	+1.1
1,739,839	-		DZA65_RS08265	0.22	+0.0