Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,634,629	+		DZA65_RS07835	0.81	-1.2
1,634,629	+		DZA65_RS07835	0.81	+0.3
1,634,630	-		DZA65_RS07835	0.81	-0.5
1,634,630	-		DZA65_RS07835	0.81	+0.1
1,634,630	-		DZA65_RS07835	0.81	+1.9
1,634,660	+		DZA65_RS07835	0.82	+0.3
1,634,660	+		DZA65_RS07835	0.82	-0.6
1,634,660	+		DZA65_RS07835	0.82	+0.1
1,634,661	-		DZA65_RS07835	0.82	-1.5
1,634,661	-		DZA65_RS07835	0.82	-0.4
1,634,661	-		DZA65_RS07835	0.82	-0.4
1,634,661	-		DZA65_RS07835	0.82	-0.4
1,634,661	-		DZA65_RS07835	0.82	-0.6
1,634,661	-		DZA65_RS07835	0.82	-0.2
1,634,672	+		DZA65_RS07835	0.83	-1.0
1,634,672	+		DZA65_RS07835	0.83	-1.0
1,634,777	+		DZA65_RS07835	0.90	+0.3
1,634,777	+		DZA65_RS07835	0.90	+1.8
1,634,777	+		DZA65_RS07835	0.90	-1.1
1,635,194	+		DZA65_RS07840	0.37	-0.7
1,635,194	+		DZA65_RS07840	0.37	+0.8
1,635,195	-		DZA65_RS07840	0.37	-2.2
1,635,195	-		DZA65_RS07840	0.37	-1.2
1,635,195	-		DZA65_RS07840	0.37	+0.1
1,635,276	+		DZA65_RS07840	0.49	-2.1
1,635,276	+		DZA65_RS07840	0.49	-0.5
1,635,276	+		DZA65_RS07840	0.49	-0.3
1,635,276	+		DZA65_RS07840	0.49	+1.0
1,635,276	+		DZA65_RS07840	0.49	-0.4
1,635,277	-		DZA65_RS07840	0.50	-0.1
1,635,309	-		DZA65_RS07840	0.55	+0.1
1,635,432	+		DZA65_RS07840	0.73	+0.1
1,635,432	+		DZA65_RS07840	0.73	+0.6
1,635,433	-		DZA65_RS07840	0.74	+0.1
1,635,504	+		DZA65_RS07840	0.84	-1.2
1,635,560	+				+0.7
1,635,560	+				-1.8
1,635,560	+				+0.0
1,635,561	-				-0.7
1,635,561	-				-0.2
1,635,561	-				+1.1
1,635,580	+				-1.0
1,635,580	+				-1.6
1,635,581	-				+0.6
1,635,581	-				-0.8
1,635,615	+				+0.8
1,635,615	+				-0.8
1,635,615	+				+0.2
1,635,615	+				-1.0
1,635,615	+				+1.6
1,635,616	-				+0.1
1,635,616	-				+1.3
1,635,616	-				-1.1
1,635,662	+				-0.7
1,635,662	+				-0.1
1,635,663	-				+1.1
1,635,760	-		DZA65_RS07845	0.10	+0.3
1,635,999	+		DZA65_RS07845	0.27	-0.7
1,635,999	+		DZA65_RS07845	0.27	-0.7
1,635,999	+		DZA65_RS07845	0.27	-0.1
1,635,999	+				+1.3
1,635,999	+		DZA65_RS07845	0.27	+1.9
1,636,000	-		DZA65_RS07845	0.27	+0.7
1,636,000	-		DZA65_RS07845	0.27	-0.3
1,636,000	-		DZA65_RS07845	0.27	-0.7
1,636,000	-		DZA65_RS07845	0.27	-0.7
1,636,041	+		DZA65_RS07845	0.30	+1.0
1,636,042	-		DZA65_RS07845	0.30	+0.6
1,636,059	+		DZA65_RS07845	0.31	+0.6
1,636,059	+		DZA65_RS07845	0.31	+0.3
1,636,059	+		DZA65_RS07845	0.31	+1.8
1,636,059	+		DZA65_RS07845	0.31	+0.8
1,636,059	+		DZA65_RS07845	0.31	-0.7
1,636,060	-		DZA65_RS07845	0.31	-0.7
1,636,060	-		DZA65_RS07845	0.31	+0.6
1,636,060	-		DZA65_RS07845	0.31	-2.5
1,636,060	-		DZA65_RS07845	0.31	-0.7
1,636,060	-		DZA65_RS07845	0.31	-0.7
1,636,060	-		DZA65_RS07845	0.31	+1.7
1,636,060	-		DZA65_RS07845	0.31	+1.2
1,636,060	-		DZA65_RS07845	0.31	-0.3
1,636,060	-		DZA65_RS07845	0.31	+0.4
1,636,060	-		DZA65_RS07845	0.31	-0.3
1,636,060	-		DZA65_RS07845	0.31	+0.5
1,636,125	+		DZA65_RS07845	0.35	+0.7
1,636,125	+		DZA65_RS07845	0.35	+0.9
1,636,125	+		DZA65_RS07845	0.35	+0.3
1,636,125	+		DZA65_RS07845	0.35	-0.0
1,636,125	+		DZA65_RS07845	0.35	+0.4
1,636,125	+		DZA65_RS07845	0.35	-0.7
1,636,125	+		DZA65_RS07845	0.35	-0.2
1,636,125	+		DZA65_RS07845	0.35	-2.0
1,636,125	+		DZA65_RS07845	0.35	+0.3
1,636,126	-		DZA65_RS07845	0.36	+0.6
1,636,126	-		DZA65_RS07845	0.36	-0.1
1,636,126	-		DZA65_RS07845	0.36	-0.4
1,636,126	-		DZA65_RS07845	0.36	-0.0
1,636,126	-		DZA65_RS07845	0.36	-1.5
1,636,126	-		DZA65_RS07845	0.36	+0.9
1,636,126	-		DZA65_RS07845	0.36	-0.2
1,636,126	-		DZA65_RS07845	0.36	+0.9
1,636,126	-		DZA65_RS07845	0.36	+0.6
1,636,126	-		DZA65_RS07845	0.36	+0.6
1,636,149	+		DZA65_RS07845	0.37	-2.5
1,636,149	+		DZA65_RS07845	0.37	+0.2
1,636,150	-		DZA65_RS07845	0.37	-0.2
1,636,150	-		DZA65_RS07845	0.37	+2.1
1,636,168	+		DZA65_RS07845	0.38	-0.9
1,636,168	+		DZA65_RS07845	0.38	-0.5
1,636,168	+		DZA65_RS07845	0.38	-0.4
1,636,169	-		DZA65_RS07845	0.39	+0.9
1,636,185	+		DZA65_RS07845	0.40	+0.1
1,636,186	-		DZA65_RS07845	0.40	+0.3
1,636,186	-		DZA65_RS07845	0.40	-0.1
1,636,186	-		DZA65_RS07845	0.40	+1.1
1,636,186	-		DZA65_RS07845	0.40	-1.7
1,636,186	-				+1.9
1,636,186	-		DZA65_RS07845	0.40	+1.2
1,636,200	+		DZA65_RS07845	0.41	+0.2
1,636,201	-		DZA65_RS07845	0.41	-1.7
1,636,210	+		DZA65_RS07845	0.41	+0.8
1,636,210	+		DZA65_RS07845	0.41	+0.3
1,636,211	-		DZA65_RS07845	0.41	-1.0
1,636,288	+		DZA65_RS07845	0.47	-0.7
1,636,289	-		DZA65_RS07845	0.47	+0.2
1,636,289	-		DZA65_RS07845	0.47	+0.0
1,636,291	-		DZA65_RS07845	0.47	-0.1
1,636,515	+		DZA65_RS07845	0.63	+0.6
1,636,515	+		DZA65_RS07845	0.63	-0.1
1,636,515	+		DZA65_RS07845	0.63	-0.7
1,636,516	-		DZA65_RS07845	0.63	-0.5
1,636,587	+		DZA65_RS07845	0.68	+1.7
1,636,587	+		DZA65_RS07845	0.68	+0.3
1,636,588	-		DZA65_RS07845	0.68	+0.5
1,636,590	+		DZA65_RS07845	0.68	-0.6
1,636,707	+		DZA65_RS07845	0.76	+0.3
1,636,708	-		DZA65_RS07845	0.76	-0.3
1,636,710	+		DZA65_RS07845	0.76	-0.3
1,636,710	+		DZA65_RS07845	0.76	+1.1
1,636,770	+		DZA65_RS07845	0.80	-2.5
1,636,771	-		DZA65_RS07845	0.80	+0.1
1,636,811	+		DZA65_RS07845	0.83	+0.9
1,636,811	+		DZA65_RS07845	0.83	+2.3
1,636,812	-		DZA65_RS07845	0.83	+1.1
1,636,812	-		DZA65_RS07845	0.83	+1.3
1,636,812	-		DZA65_RS07845	0.83	-2.5
1,636,955	+				-0.8
1,636,964	+				+0.0
1,636,964	+				-2.0
1,636,965	-				-1.2
1,637,045	-				-1.5
1,637,045	-				+1.1
1,637,071	+				-0.3
1,637,071	+				-1.4
1,637,071	+				-0.4
1,637,071	+				-1.7
1,637,071	+				-0.4
1,637,071	+				-2.0
1,637,071	+				-0.7
1,637,072	-				-0.1
1,637,072	-				-1.0
1,637,072	-				+1.9
1,637,072	-				+0.9
1,637,072	-				+0.1
1,637,072	-				+0.3
1,637,072	-				-1.2
1,637,072	-				+0.2
1,637,072	-				+0.5
1,637,073	+				+0.1
1,637,074	-				+0.0
1,637,285	+		DZA65_RS07850	0.23	-1.0
1,637,285	+		DZA65_RS07850	0.23	+1.3
1,637,285	+		DZA65_RS07850	0.23	-0.0
1,637,286	-		DZA65_RS07850	0.23	+0.8
1,637,286	-		DZA65_RS07850	0.23	+0.9
1,637,286	-		DZA65_RS07850	0.23	+0.8
1,637,362	+		DZA65_RS07850	0.31	-2.2
1,637,363	-		DZA65_RS07850	0.31	-0.2
1,637,692	+		DZA65_RS07850	0.66	+1.8
1,637,692	+		DZA65_RS07850	0.66	+1.9
1,637,692	+		DZA65_RS07850	0.66	+0.0
1,637,692	+		DZA65_RS07850	0.66	+0.3
1,637,693	-		DZA65_RS07850	0.66	+0.5
1,637,869	+		DZA65_RS07850	0.84	-0.5
1,637,938	-				+1.1
1,638,010	+				-0.3
1,638,010	+				+0.1
1,638,010	+				-0.7
1,638,010	+				-0.2
1,638,010	+				-0.2
1,638,011	-				+0.0
1,638,011	-				+1.1
1,638,011	-				-0.1
1,638,011	-				-0.1
1,638,011	-				-0.1
1,638,032	-				+1.1
1,638,042	-				+0.3
1,638,042	-				+0.3