Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07790

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,624,274	+		DZA65_RS07785	0.48	-0.3
1,624,275	-		DZA65_RS07785	0.48	+0.8
1,624,275	-		DZA65_RS07785	0.48	+1.7
1,624,275	-		DZA65_RS07785	0.48	+1.8
1,624,275	-		DZA65_RS07785	0.48	+0.4
1,624,372	+		DZA65_RS07785	0.56	+1.9
1,624,372	+		DZA65_RS07785	0.56	-2.2
1,624,399	-		DZA65_RS07785	0.59	-1.0
1,624,399	-		DZA65_RS07785	0.59	+0.4
1,624,408	-		DZA65_RS07785	0.59	-0.5
1,624,408	-		DZA65_RS07785	0.59	-0.9
1,624,433	+		DZA65_RS07785	0.61	+0.3
1,624,452	-		DZA65_RS07785	0.63	+0.9
1,624,470	-		DZA65_RS07785	0.65	+0.5
1,624,474	-		DZA65_RS07785	0.65	-1.7
1,624,474	-				-0.7
1,624,540	+		DZA65_RS07785	0.70	+0.1
1,624,540	+		DZA65_RS07785	0.70	-1.2
1,624,540	+		DZA65_RS07785	0.70	+0.3
1,624,541	-		DZA65_RS07785	0.70	-2.7
1,624,541	-		DZA65_RS07785	0.70	+1.6
1,624,541	-		DZA65_RS07785	0.70	-1.4
1,624,541	-		DZA65_RS07785	0.70	+0.1
1,624,541	-		DZA65_RS07785	0.70	+0.3
1,624,541	-		DZA65_RS07785	0.70	+0.7
1,624,541	-		DZA65_RS07785	0.70	-1.1
1,624,545	+		DZA65_RS07785	0.71	-0.3
1,624,569	+		DZA65_RS07785	0.73	+0.8
1,624,569	+		DZA65_RS07785	0.73	-0.3
1,624,570	-		DZA65_RS07785	0.73	+0.0
1,624,575	+		DZA65_RS07785	0.73	+1.9
1,624,575	+		DZA65_RS07785	0.73	-0.7
1,624,576	-		DZA65_RS07785	0.73	+0.5
1,624,576	-		DZA65_RS07785	0.73	-1.0
1,624,576	-		DZA65_RS07785	0.73	-0.3
1,624,576	-		DZA65_RS07785	0.73	-1.2
1,624,578	+		DZA65_RS07785	0.73	+0.2
1,624,716	-		DZA65_RS07785	0.85	+0.8
1,624,716	-		DZA65_RS07785	0.85	-0.3
1,624,731	-		DZA65_RS07785	0.86	+0.2
1,624,737	+		DZA65_RS07785	0.87	-0.0
1,624,738	-		DZA65_RS07785	0.87	+0.7
1,624,738	-		DZA65_RS07785	0.87	-1.5
1,624,738	-		DZA65_RS07785	0.87	-1.7
1,624,754	-		DZA65_RS07785	0.88	-0.2
1,624,754	-		DZA65_RS07785	0.88	-1.5
1,624,829	+				-0.5
1,624,829	+				-0.6
1,624,830	-				+1.1
1,624,830	-				-0.7
1,624,922	-				+1.1
1,624,922	-				-0.1
1,624,922	-				+1.7
1,624,922	-				+1.4
1,624,922	-				+0.3
1,624,922	-				-1.0
1,624,922	-				-0.7
1,624,922	-				-0.7
1,624,934	+				+0.4
1,624,935	-				+1.3
1,624,935	-				+0.6
1,624,935	-				-0.6
1,624,935	-				-0.3
1,624,935	-				-0.3
1,624,935	-				-2.2
1,624,935	-				+0.7
1,624,935	-				-1.5
1,624,979	+				-1.2
1,624,980	-				-0.1
1,624,980	-				-0.1
1,624,993	-				+0.6
1,624,993	-				-0.4
1,625,007	+				-0.6
1,625,007	+				-0.1
1,625,008	-				-1.2
1,625,008	-				+1.3
1,625,034	+				-0.4
1,625,034	+				+0.9
1,625,035	-				-1.5
1,625,040	+				+3.8
1,625,040	+				-0.7
1,625,040	+				+0.5
1,625,040	+				+0.5
1,625,040	+				-0.2
1,625,040	+				-0.8
1,625,040	+				+0.9
1,625,041	-				+0.3
1,625,041	-				+1.3
1,625,041	-				-0.1
1,625,041	-				-0.2
1,625,041	-				-0.8
1,625,047	-				-1.4
1,625,058	+				-0.1
1,625,058	+				-1.2
1,625,058	+				+0.1
1,625,058	+				+1.0
1,625,058	+				+1.2
1,625,070	+				-0.6
1,625,071	-				+0.1
1,625,076	+				+0.1
1,625,076	+				-0.1
1,625,076	+				+1.6
1,625,076	+				+0.5
1,625,076	+				+0.1
1,625,076	+				+1.1
1,625,077	-				+0.3
1,625,077	-				-0.7
1,625,077	-				-1.2
1,625,077	-				+1.0
1,625,077	-				+0.5
1,625,088	+				+1.2
1,625,098	+				-0.2
1,625,099	-				-0.7
1,625,099	-				+1.3
1,625,099	-				-1.5
1,625,099	-				-1.7
1,625,112	-				+0.2
1,625,112	-				+2.8
1,625,112	-				+0.3
1,625,140	+				-0.7
1,625,140	+				-1.0
1,625,140	+				-1.2
1,625,140	+				-0.4
1,625,140	+				+2.2
1,625,140	+				+1.2
1,625,140	+				+0.3
1,625,140	+				+0.5
1,625,141	-				-2.5
1,625,141	-				+1.1
1,625,141	-				+0.1
1,625,141	-				+1.1
1,625,143	+				+1.3
1,625,154	+				-1.4
1,625,154	+				+0.7
1,625,154	+				-0.3
1,625,154	+				-1.0
1,625,154	+				-0.7
1,625,154	+				-1.0
1,625,154	+				+1.0
1,625,155	-				+1.3
1,625,155	-				-1.1
1,625,155	-				-0.1
1,625,155	-				-1.1
1,625,155	-				-1.2
1,625,155	-				-1.5
1,625,155	-				+0.1
1,625,155	-				+1.7
1,625,155	-				+0.1
1,625,155	-				+1.4
1,625,155	-				+1.9
1,625,155	-				+1.7
1,625,218	-				-0.1
1,625,218	-				-0.9
1,625,239	+				-0.3
1,625,265	+				-0.3
1,625,265	+				+0.1
1,625,266	-				-0.2
1,625,266	-				-0.2
1,625,273	+				+0.2
1,625,273	+				-0.9
1,625,273	+				+0.3
1,625,274	-				-0.7
1,625,274	-				-2.0
1,625,280	+				-0.8
1,625,280	+				-0.8
1,625,280	+				+0.6
1,625,280	+				-2.2
1,625,281	-				-0.8
1,625,281	-				+2.9
1,625,281	-				-1.7
1,625,281	-				+0.5
1,625,281	-				+0.3
1,625,337	+				-0.2
1,625,337	+				+1.1
1,625,338	-				-0.8
1,625,363	+				-0.5
1,625,363	+				-0.9
1,625,387	-				+3.1
1,625,409	+				+0.5
1,625,409	+				+0.5
1,625,409	+				-0.7
1,625,409	+				+0.9
1,625,409	+				+0.1
1,625,409	+				+0.3
1,625,409	+				-0.5
1,625,409	+				+0.3
1,625,410	-				+0.9
1,625,410	-				-2.5
1,625,410	-				+1.0
1,625,418	+				-0.6
1,625,418	+				-0.6
1,625,418	+				-0.0
1,625,419	-				+0.7
1,625,419	-				-0.8
1,625,419	-				-0.7
1,625,613	+		DZA65_RS07790	0.18	+0.1
1,625,614	-		DZA65_RS07790	0.19	+0.5
1,625,614	-		DZA65_RS07790	0.19	-2.0
1,625,614	-		DZA65_RS07790	0.19	-0.5
1,625,742	+		DZA65_RS07790	0.24	+0.9
1,625,742	+		DZA65_RS07790	0.24	-0.8
1,625,743	-		DZA65_RS07790	0.25	-1.0
1,625,793	+		DZA65_RS07790	0.27	-0.9
1,625,794	-		DZA65_RS07790	0.27	+1.1
1,625,794	-		DZA65_RS07790	0.27	+0.2
1,625,794	-		DZA65_RS07790	0.27	-1.7
1,625,818	-		DZA65_RS07790	0.28	+1.9
1,625,832	+		DZA65_RS07790	0.29	-0.1
1,625,832	+		DZA65_RS07790	0.29	+0.6
1,625,832	+		DZA65_RS07790	0.29	+1.1
1,625,832	+		DZA65_RS07790	0.29	-1.2
1,625,832	+		DZA65_RS07790	0.29	-0.7
1,625,833	-		DZA65_RS07790	0.29	-0.1
1,625,833	-		DZA65_RS07790	0.29	-0.1
1,625,833	-		DZA65_RS07790	0.29	+1.1
1,625,833	-		DZA65_RS07790	0.29	-1.2
1,625,833	-		DZA65_RS07790	0.29	-0.9
1,625,833	-		DZA65_RS07790	0.29	+0.1
1,625,834	+		DZA65_RS07790	0.29	-0.2
1,625,834	+		DZA65_RS07790	0.29	-0.7
1,625,834	+		DZA65_RS07790	0.29	-0.4
1,625,834	+		DZA65_RS07790	0.29	-1.8
1,625,835	-		DZA65_RS07790	0.29	-0.2
1,625,835	-		DZA65_RS07790	0.29	-0.4
1,625,883	+		DZA65_RS07790	0.31	+0.1
1,625,883	+		DZA65_RS07790	0.31	-0.7
1,625,883	+		DZA65_RS07790	0.31	+0.8
1,625,883	+		DZA65_RS07790	0.31	-0.3
1,625,883	+		DZA65_RS07790	0.31	+0.3
1,625,883	+		DZA65_RS07790	0.31	+0.6
1,625,883	+		DZA65_RS07790	0.31	-1.7
1,625,883	+		DZA65_RS07790	0.31	+1.0
1,625,884	-		DZA65_RS07790	0.31	-0.2
1,625,884	-		DZA65_RS07790	0.31	-0.3
1,625,884	-		DZA65_RS07790	0.31	-0.9
1,625,970	+		DZA65_RS07790	0.35	+0.8
1,625,971	-		DZA65_RS07790	0.35	-1.8
1,625,971	-		DZA65_RS07790	0.35	-0.4
1,625,971	-		DZA65_RS07790	0.35	-1.0
1,625,971	-		DZA65_RS07790	0.35	-0.7
1,625,971	-		DZA65_RS07790	0.35	-0.2
1,626,003	+		DZA65_RS07790	0.37	+0.9
1,626,003	+		DZA65_RS07790	0.37	+0.7
1,626,004	-		DZA65_RS07790	0.37	+0.1
1,626,004	-		DZA65_RS07790	0.37	+0.3
1,626,004	-		DZA65_RS07790	0.37	-0.8
1,626,004	-		DZA65_RS07790	0.37	+0.5
1,626,004	-		DZA65_RS07790	0.37	+1.1
1,626,004	-		DZA65_RS07790	0.37	+0.3
1,626,004	-		DZA65_RS07790	0.37	-1.0
1,626,004	-		DZA65_RS07790	0.37	+0.2
1,626,043	+		DZA65_RS07790	0.38	+0.9
1,626,043	+		DZA65_RS07790	0.38	-0.3
1,626,171	+		DZA65_RS07790	0.44	+0.9
1,626,171	+		DZA65_RS07790	0.44	+1.3
1,626,171	+		DZA65_RS07790	0.44	+0.6
1,626,171	+		DZA65_RS07790	0.44	-0.0
1,626,172	-		DZA65_RS07790	0.44	+0.7
1,626,172	-		DZA65_RS07790	0.44	-1.7
1,626,172	-		DZA65_RS07790	0.44	-0.1
1,626,172	-		DZA65_RS07790	0.44	-0.7
1,626,172	-		DZA65_RS07790	0.44	+0.3
1,626,353	+		DZA65_RS07790	0.53	+0.2
1,626,353	+		DZA65_RS07790	0.53	-0.4
1,626,353	+		DZA65_RS07790	0.53	+1.0
1,626,353	+		DZA65_RS07790	0.53	-1.5
1,626,353	+		DZA65_RS07790	0.53	+0.8
1,626,353	+		DZA65_RS07790	0.53	-0.7
1,626,353	+		DZA65_RS07790	0.53	+1.1
1,626,353	+		DZA65_RS07790	0.53	-1.4
1,626,354	-		DZA65_RS07790	0.53	+1.3
1,626,354	-		DZA65_RS07790	0.53	-2.5
1,626,354	-		DZA65_RS07790	0.53	+0.3
1,626,354	-		DZA65_RS07790	0.53	+0.6
1,626,513	+		DZA65_RS07790	0.60	+0.0
1,626,514	-		DZA65_RS07790	0.60	-0.2
1,626,514	-		DZA65_RS07790	0.60	+1.9
1,626,514	-		DZA65_RS07790	0.60	+0.8
1,626,536	+		DZA65_RS07790	0.61	-0.2
1,626,536	+		DZA65_RS07790	0.61	-0.7
1,626,570	+		DZA65_RS07790	0.63	+0.7
1,626,571	-		DZA65_RS07790	0.63	-0.9
1,626,571	-		DZA65_RS07790	0.63	-1.2
1,626,571	-		DZA65_RS07790	0.63	+0.1
1,626,571	-		DZA65_RS07790	0.63	-1.0
1,626,571	-		DZA65_RS07790	0.63	-0.1
1,626,582	+		DZA65_RS07790	0.64	-0.9
1,626,582	+		DZA65_RS07790	0.64	-1.2
1,626,583	-		DZA65_RS07790	0.64	-0.2
1,626,583	-		DZA65_RS07790	0.64	+0.3
1,626,646	+		DZA65_RS07790	0.66	+0.1
1,626,646	+		DZA65_RS07790	0.66	-1.5
1,626,646	+		DZA65_RS07790	0.66	-0.9
1,626,647	-		DZA65_RS07790	0.67	-0.1
1,626,648	+		DZA65_RS07790	0.67	-0.2
1,626,648	+		DZA65_RS07790	0.67	-0.7
1,626,648	+		DZA65_RS07790	0.67	+0.3
1,626,648	+		DZA65_RS07790	0.67	-0.5
1,626,648	+		DZA65_RS07790	0.67	+3.2
1,626,648	+		DZA65_RS07790	0.67	+0.4
1,626,648	+		DZA65_RS07790	0.67	+0.3
1,626,648	+		DZA65_RS07790	0.67	-0.4
1,626,649	-		DZA65_RS07790	0.67	-0.6
1,626,649	-		DZA65_RS07790	0.67	-0.7
1,626,649	-				+0.3
1,626,649	-		DZA65_RS07790	0.67	-0.7
1,626,649	-		DZA65_RS07790	0.67	+1.9
1,626,649	-		DZA65_RS07790	0.67	-0.6
1,626,779	-		DZA65_RS07790	0.73	-0.2
1,626,844	-		DZA65_RS07790	0.76	-3.0
1,626,844	-		DZA65_RS07790	0.76	-1.5
1,626,855	-		DZA65_RS07790	0.76	+0.3
1,627,014	+		DZA65_RS07790	0.84	-2.0
1,627,014	+		DZA65_RS07790	0.84	+0.8
1,627,014	+		DZA65_RS07790	0.84	-0.5
1,627,014	+		DZA65_RS07790	0.84	-2.2
1,627,014	+		DZA65_RS07790	0.84	-0.3
1,627,014	+		DZA65_RS07790	0.84	-0.5
1,627,014	+		DZA65_RS07790	0.84	-0.5
1,627,014	+		DZA65_RS07790	0.84	+0.1
1,627,014	+		DZA65_RS07790	0.84	-0.7
1,627,014	+		DZA65_RS07790	0.84	-0.3
1,627,014	+		DZA65_RS07790	0.84	-0.4
1,627,014	+		DZA65_RS07790	0.84	+1.9
1,627,014	+		DZA65_RS07790	0.84	-0.3
1,627,014	+		DZA65_RS07790	0.84	-1.7
1,627,014	+		DZA65_RS07790	0.84	-0.4
1,627,014	+		DZA65_RS07790	0.84	-0.1
1,627,015	-		DZA65_RS07790	0.84	+0.3
1,627,015	-		DZA65_RS07790	0.84	+0.5
1,627,015	-		DZA65_RS07790	0.84	+0.3
1,627,015	-		DZA65_RS07790	0.84	-0.3
1,627,015	-		DZA65_RS07790	0.84	+0.3
1,627,015	-		DZA65_RS07790	0.84	-0.3
1,627,015	-		DZA65_RS07790	0.84	-0.3
1,627,074	+		DZA65_RS07790	0.86	-0.4
1,627,074	+		DZA65_RS07790	0.86	-0.2
1,627,075	-		DZA65_RS07790	0.86	+0.3
1,627,075	-		DZA65_RS07790	0.86	-1.0
1,627,075	-		DZA65_RS07790	0.86	-0.1
1,627,230	+				+0.5
1,627,231	-				+0.1
1,627,238	+				-0.8
1,627,239	-				-0.5
1,627,338	+				-0.4
1,627,338	+				-1.5
1,627,339	-				+0.8
1,627,339	-				-0.5
1,627,448	+				+0.2
1,627,449	-				+0.9
1,627,449	-				+0.5
1,627,583	+		DZA65_RS07795	0.34	-0.0
1,627,583	+		DZA65_RS07795	0.34	+0.8
1,627,583	+		DZA65_RS07795	0.34	+1.2
1,627,623	-		DZA65_RS07795	0.41	+0.6
1,627,670	+		DZA65_RS07795	0.50	-0.4
1,627,703	+		DZA65_RS07795	0.56	+1.0
1,627,704	-		DZA65_RS07795	0.56	-0.2
1,627,719	+		DZA65_RS07795	0.59	-0.5
1,627,719	+		DZA65_RS07795	0.59	+1.3
1,627,719	+		DZA65_RS07795	0.59	+0.0
1,627,720	-		DZA65_RS07795	0.59	+0.7
1,627,907	+				+0.3
1,627,907	+				+0.7
1,627,907	+				+0.3
1,627,908	-				+0.2
1,627,908	-				-0.2
1,627,908	-				-0.1
1,627,908	-				+1.8
1,627,908	-				+1.2
1,627,926	+				+0.1
1,627,927	-				+0.3
1,627,975	+				-0.8
1,627,982	+				-1.1
1,627,983	-				-1.1
1,628,018	-				-0.5
1,628,020	-				-0.1
1,628,020	-				-0.5
1,628,020	-				+0.2
1,628,200	+				-0.4
1,628,200	+				-0.2
1,628,201	-				+2.3
1,628,211	+				-0.8
1,628,211	+				+0.3
1,628,211	+				-0.2
1,628,212	-				+0.1
1,628,254	+				-1.5
1,628,254	+				-1.2
1,628,254	+				+0.7
1,628,255	-				+0.3
1,628,255	-				+1.5
1,628,255	-				-0.1
1,628,255	-				-0.2
1,628,270	+				+2.1
1,628,271	-				+0.2
1,628,287	-				+0.3
1,628,297	-				+1.1
1,628,361	+				-0.5