Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07530

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,563,065	-				-0.5
1,563,120	+		DZA65_RS07525	0.10	+0.1
1,563,120	+		DZA65_RS07525	0.10	+0.0
1,563,145	+		DZA65_RS07525	0.13	-0.2
1,563,321	+		DZA65_RS07525	0.31	+0.4
1,563,322	-		DZA65_RS07525	0.31	-0.1
1,563,373	-		DZA65_RS07525	0.36	+1.4
1,563,403	+		DZA65_RS07525	0.39	+0.6
1,563,403	+		DZA65_RS07525	0.39	+1.4
1,563,630	+		DZA65_RS07525	0.63	+0.5
1,563,699	+		DZA65_RS07525	0.70	-0.1
1,563,700	-		DZA65_RS07525	0.70	-1.4
1,563,745	+		DZA65_RS07525	0.74	+0.4
1,563,756	-		DZA65_RS07525	0.76	-1.2
1,563,786	-		DZA65_RS07525	0.79	+0.7
1,563,786	-		DZA65_RS07525	0.79	+0.2
1,563,805	+		DZA65_RS07525	0.81	+1.1
1,563,806	-		DZA65_RS07525	0.81	+2.6
1,563,806	-		DZA65_RS07525	0.81	+0.2
1,563,806	-		DZA65_RS07525	0.81	-2.0
1,563,806	-		DZA65_RS07525	0.81	-0.2
1,563,806	-		DZA65_RS07525	0.81	-2.1
1,563,808	+		DZA65_RS07525	0.81	-0.6
1,563,808	+		DZA65_RS07525	0.81	+0.9
1,563,808	+		DZA65_RS07525	0.81	+0.9
1,563,808	+		DZA65_RS07525	0.81	-1.0
1,563,808	+		DZA65_RS07525	0.81	-0.2
1,563,809	-		DZA65_RS07525	0.81	+0.7
1,563,809	-		DZA65_RS07525	0.81	+0.9
1,563,809	-		DZA65_RS07525	0.81	+0.7
1,563,809	-		DZA65_RS07525	0.81	-0.3
1,563,809	-		DZA65_RS07525	0.81	-2.1
1,563,809	-		DZA65_RS07525	0.81	+0.2
1,563,810	+		DZA65_RS07525	0.81	-0.4
1,563,810	+		DZA65_RS07525	0.81	-0.6
1,563,811	-		DZA65_RS07525	0.81	-0.4
1,563,844	-		DZA65_RS07525	0.85	-2.4
1,563,913	+				-3.0
1,563,913	+				+0.1
1,563,913	+				-1.6
1,563,914	-				-0.2
1,563,914	-				+0.7
1,563,914	-				+0.2
1,563,914	-				+0.5
1,563,914	-				-0.9
1,563,933	+				-0.2
1,563,933	+				-0.8
1,563,933	+				+0.2
1,563,933	+				+1.3
1,563,933	+				+0.1
1,563,933	+				-1.1
1,563,934	-				-0.8
1,563,934	-				+0.0
1,563,949	+				-1.8
1,563,949	+				-0.1
1,563,989	+				-0.1
1,564,009	-				-1.0
1,564,009	-				-0.3
1,564,027	+				-0.3
1,564,027	+				-0.3
1,564,030	+				-0.2
1,564,030	+				-1.2
1,564,031	-				-0.4
1,564,031	-				-0.7
1,564,031	-				-0.1
1,564,031	-				-1.6
1,564,031	-				-0.2
1,564,031	-				-1.6
1,564,031	-				-1.6
1,564,036	+				-0.2
1,564,036	+				-1.0
1,564,037	-				+1.0
1,564,037	-				+0.4
1,564,037	-				-1.4
1,564,037	-				-0.4
1,564,085	+		DZA65_RS07530	0.23	+0.2
1,564,089	+		DZA65_RS07530	0.25	-0.4
1,564,089	+		DZA65_RS07530	0.25	+0.6
1,564,090	-		DZA65_RS07530	0.26	+0.7
1,564,090	-		DZA65_RS07530	0.26	-0.8
1,564,119	+		DZA65_RS07530	0.39	-1.1
1,564,119	+		DZA65_RS07530	0.39	+0.6
1,564,120	-		DZA65_RS07530	0.39	-0.4
1,564,136	+		DZA65_RS07530	0.46	+0.4
1,564,136	+		DZA65_RS07530	0.46	-0.9
1,564,184	+		DZA65_RS07530	0.68	-2.0
1,564,184	+		DZA65_RS07530	0.68	+0.1
1,564,184	+		DZA65_RS07530	0.68	+3.4
1,564,205	-		DZA65_RS07530	0.77	-0.9
1,564,264	-				-1.6
1,564,348	+				-0.3
1,564,348	+				-1.8
1,564,349	-				+0.6
1,564,349	-				-1.1
1,564,349	-				-1.9
1,564,350	+				-0.9
1,564,350	+				-0.5
1,564,350	+				+0.7
1,564,350	+				+0.2
1,564,350	+				-1.1
1,564,350	+				-0.6
1,564,350	+				+1.4
1,564,350	+				+0.8
1,564,350	+				-0.6
1,564,350	+				+0.2
1,564,350	+				-2.6
1,564,350	+				+0.4
1,564,350	+				+1.4
1,564,350	+				+1.4
1,564,351	-				-0.6
1,564,351	-				-0.3
1,564,351	-				+0.4
1,564,351	-				+1.1
1,564,351	-				+1.3
1,564,351	-				+0.1
1,564,351	-				+0.9
1,564,351	-				+0.1
1,564,351	-				-2.8
1,564,351	-				-0.1
1,564,351	-				-1.6
1,564,351	-				-0.1
1,564,356	-				-0.2
1,564,356	-				-1.4
1,564,361	+				-0.6
1,564,361	+				+0.4
1,564,361	+				+0.8
1,564,361	+				+0.5
1,564,362	-				-0.5
1,564,362	-				+0.9
1,564,363	+				-0.2
1,564,364	-				-0.4
1,564,364	-				-0.2
1,564,370	+				-2.0
1,564,371	-				-0.6
1,564,451	+				+1.5
1,564,451	+				-0.6
1,564,452	-				+0.4
1,564,452	-				+0.4
1,564,452	-				+0.4
1,564,468	+				-0.3
1,564,468	+				-0.4
1,564,468	+				+1.2
1,564,469	-				+0.2
1,564,469	-				+1.9
1,564,469	-				+0.2
1,564,472	+				+0.8
1,564,472	+				-0.6
1,564,478	-				+0.4
1,564,504	+				+0.0
1,564,505	-				+0.8
1,564,505	-				+0.9
1,564,505	-				+0.4
1,564,511	+				-1.1
1,564,523	-				-0.1
1,564,578	+				-1.0
1,564,657	+				+0.6
1,564,657	+				+1.4
1,564,657	+				+0.4
1,564,657	+				+0.4
1,564,658	-				-0.5
1,564,712	+				+1.5
1,564,713	-				+0.4
1,564,714	+				+0.2
1,564,714	+				-0.6
1,564,731	+				+0.2
1,564,732	-				+0.9
1,564,732	-				+0.2
1,564,768	-				-1.4
1,564,783	-				+0.9
1,564,791	-				+0.2
1,564,798	+				-0.1
1,564,798	+				+0.4
1,564,798	+				+0.4
1,564,798	+				+0.5
1,564,798	+				-0.0
1,564,798	+				+0.4
1,564,800	+				-0.6
1,564,848	-				-1.2
1,564,886	+				+0.8
1,564,886	+				+0.7
1,564,887	-				+0.2
1,564,887	-				-0.3
1,564,887	-				-0.1
1,564,887	-				+0.8
1,564,887	-				-1.2
1,564,887	-				+0.4
1,564,899	-				-0.2
1,564,946	+				+1.5
1,564,947	-				-0.0
1,564,985	+		DZA65_RS07535	0.10	-1.6
1,564,986	-		DZA65_RS07535	0.10	+0.2
1,564,987	+		DZA65_RS07535	0.10	-0.3
1,564,987	+		DZA65_RS07535	0.10	+1.2
1,564,988	-		DZA65_RS07535	0.10	+0.2
1,565,069	+		DZA65_RS07535	0.12	-1.9
1,565,072	+		DZA65_RS07535	0.12	+1.0
1,565,072	+		DZA65_RS07535	0.12	+0.7
1,565,118	+		DZA65_RS07535	0.13	+0.7
1,565,127	+		DZA65_RS07535	0.13	+1.6
1,565,128	-		DZA65_RS07535	0.13	-0.8
1,565,207	+		DZA65_RS07535	0.14	+0.0
1,565,236	+		DZA65_RS07535	0.15	+1.8
1,565,236	+		DZA65_RS07535	0.15	-1.1
1,565,236	+		DZA65_RS07535	0.15	-0.5
1,565,237	-		DZA65_RS07535	0.15	+1.2
1,565,248	+		DZA65_RS07535	0.15	-2.2