Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07500 and DZA65_RS07505 overlap by 8 nucleotides DZA65_RS07505 and DZA65_RS07510 are separated by 2 nucleotides DZA65_RS07510 and DZA65_RS07515 overlap by 4 nucleotides
DZA65_RS07500: DZA65_RS07500 - GNAT family N-acetyltransferase, at 1,559,056 to 1,560,075
_RS07500
DZA65_RS07505: DZA65_RS07505 - Trm112 family protein, at 1,560,068 to 1,560,232
_RS07505
DZA65_RS07510: DZA65_RS07510 - class I SAM-dependent methyltransferase, at 1,560,235 to 1,561,062
_RS07510
DZA65_RS07515: DZA65_RS07515 - ATP-grasp domain-containing protein, at 1,561,059 to 1,562,255
_RS07515
Position (kb) 1560
1561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1559.094 kb on + strand at 1559.094 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.097 kb on + strand at 1559.098 kb on - strand at 1559.098 kb on - strand at 1559.098 kb on - strand at 1559.149 kb on + strand at 1559.187 kb on - strand, within DZA65_RS07500 at 1559.206 kb on + strand, within DZA65_RS07500 at 1559.207 kb on - strand, within DZA65_RS07500 at 1559.207 kb on - strand, within DZA65_RS07500 at 1559.207 kb on - strand, within DZA65_RS07500 at 1559.207 kb on - strand, within DZA65_RS07500 at 1559.254 kb on + strand, within DZA65_RS07500 at 1559.258 kb on + strand, within DZA65_RS07500 at 1559.285 kb on + strand, within DZA65_RS07500 at 1559.286 kb on - strand, within DZA65_RS07500 at 1559.286 kb on - strand, within DZA65_RS07500 at 1559.334 kb on - strand, within DZA65_RS07500 at 1559.424 kb on + strand, within DZA65_RS07500 at 1559.456 kb on - strand, within DZA65_RS07500 at 1559.456 kb on - strand, within DZA65_RS07500 at 1559.529 kb on + strand, within DZA65_RS07500 at 1559.529 kb on + strand, within DZA65_RS07500 at 1559.569 kb on - strand, within DZA65_RS07500 at 1559.785 kb on - strand, within DZA65_RS07500 at 1559.803 kb on - strand, within DZA65_RS07500 at 1559.815 kb on - strand, within DZA65_RS07500 at 1559.815 kb on - strand, within DZA65_RS07500 at 1559.846 kb on + strand, within DZA65_RS07500 at 1559.847 kb on - strand, within DZA65_RS07500 at 1559.847 kb on - strand, within DZA65_RS07500 at 1559.847 kb on - strand, within DZA65_RS07500 at 1559.847 kb on - strand, within DZA65_RS07500 at 1559.847 kb on - strand, within DZA65_RS07500 at 1559.896 kb on + strand, within DZA65_RS07500 at 1559.921 kb on - strand, within DZA65_RS07500 at 1559.941 kb on - strand, within DZA65_RS07500 at 1559.941 kb on - strand, within DZA65_RS07500 at 1559.944 kb on + strand, within DZA65_RS07500 at 1559.944 kb on + strand, within DZA65_RS07500 at 1559.944 kb on + strand, within DZA65_RS07500 at 1559.944 kb on + strand, within DZA65_RS07500 at 1559.945 kb on - strand, within DZA65_RS07500 at 1560.003 kb on + strand at 1560.004 kb on - strand at 1560.004 kb on - strand at 1560.007 kb on - strand at 1560.025 kb on - strand at 1560.041 kb on - strand at 1560.073 kb on + strand at 1560.074 kb on - strand at 1560.074 kb on - strand at 1560.077 kb on - strand at 1560.096 kb on + strand, within DZA65_RS07505 at 1560.108 kb on + strand, within DZA65_RS07505 at 1560.109 kb on - strand, within DZA65_RS07505 at 1560.109 kb on - strand, within DZA65_RS07505 at 1560.118 kb on - strand, within DZA65_RS07505 at 1560.128 kb on + strand, within DZA65_RS07505 at 1560.128 kb on + strand, within DZA65_RS07505 at 1560.128 kb on + strand, within DZA65_RS07505 at 1560.129 kb on - strand, within DZA65_RS07505 at 1560.129 kb on - strand, within DZA65_RS07505 at 1560.129 kb on - strand, within DZA65_RS07505 at 1560.151 kb on + strand, within DZA65_RS07505 at 1560.152 kb on - strand, within DZA65_RS07505 at 1560.177 kb on - strand, within DZA65_RS07505 at 1560.244 kb on + strand at 1560.244 kb on + strand at 1560.245 kb on - strand at 1560.275 kb on - strand at 1560.279 kb on + strand at 1560.279 kb on + strand at 1560.280 kb on - strand at 1560.280 kb on - strand at 1560.280 kb on - strand at 1560.296 kb on + strand at 1560.301 kb on - strand at 1560.301 kb on - strand at 1560.319 kb on + strand, within DZA65_RS07510 at 1560.322 kb on - strand, within DZA65_RS07510 at 1560.322 kb on - strand, within DZA65_RS07510 at 1560.322 kb on - strand, within DZA65_RS07510 at 1560.388 kb on + strand, within DZA65_RS07510 at 1560.388 kb on + strand, within DZA65_RS07510 at 1560.388 kb on + strand, within DZA65_RS07510 at 1560.389 kb on - strand, within DZA65_RS07510 at 1560.389 kb on - strand, within DZA65_RS07510 at 1560.453 kb on - strand, within DZA65_RS07510 at 1560.495 kb on + strand, within DZA65_RS07510 at 1560.496 kb on - strand, within DZA65_RS07510 at 1560.501 kb on - strand, within DZA65_RS07510 at 1560.504 kb on - strand, within DZA65_RS07510 at 1560.519 kb on + strand, within DZA65_RS07510 at 1560.524 kb on + strand, within DZA65_RS07510 at 1560.525 kb on - strand, within DZA65_RS07510 at 1560.659 kb on + strand, within DZA65_RS07510 at 1560.669 kb on + strand, within DZA65_RS07510 at 1560.672 kb on + strand, within DZA65_RS07510 at 1560.672 kb on + strand, within DZA65_RS07510 at 1560.673 kb on - strand, within DZA65_RS07510 at 1560.719 kb on + strand, within DZA65_RS07510 at 1560.720 kb on - strand at 1560.720 kb on - strand, within DZA65_RS07510 at 1560.756 kb on + strand, within DZA65_RS07510 at 1560.757 kb on - strand, within DZA65_RS07510 at 1560.760 kb on - strand, within DZA65_RS07510 at 1560.808 kb on - strand, within DZA65_RS07510 at 1560.966 kb on + strand, within DZA65_RS07510 at 1560.988 kb on + strand at 1560.988 kb on + strand at 1560.988 kb on + strand at 1560.989 kb on - strand at 1560.989 kb on - strand at 1560.989 kb on - strand at 1560.989 kb on - strand at 1561.032 kb on + strand at 1561.032 kb on + strand at 1561.036 kb on + strand at 1561.039 kb on + strand at 1561.039 kb on + strand at 1561.040 kb on - strand at 1561.075 kb on + strand at 1561.075 kb on + strand at 1561.136 kb on - strand at 1561.136 kb on - strand at 1561.137 kb on + strand at 1561.142 kb on + strand at 1561.193 kb on + strand, within DZA65_RS07515 at 1561.193 kb on + strand, within DZA65_RS07515 at 1561.193 kb on + strand, within DZA65_RS07515 at 1561.194 kb on - strand, within DZA65_RS07515 at 1561.194 kb on - strand, within DZA65_RS07515 at 1561.197 kb on + strand, within DZA65_RS07515 at 1561.197 kb on + strand, within DZA65_RS07515 at 1561.197 kb on + strand, within DZA65_RS07515 at 1561.197 kb on + strand, within DZA65_RS07515 at 1561.198 kb on - strand, within DZA65_RS07515 at 1561.198 kb on - strand, within DZA65_RS07515 at 1561.229 kb on - strand, within DZA65_RS07515
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,559,094 + -3.2 1,559,094 + +0.8 1,559,097 + +1.4 1,559,097 + -0.5 1,559,097 + +1.4 1,559,097 + -0.2 1,559,097 + -0.3 1,559,097 + -1.0 1,559,097 + -1.2 1,559,097 + +0.7 1,559,097 + +1.5 1,559,098 - +0.1 1,559,098 - -1.6 1,559,098 - +1.2 1,559,149 + -0.6 1,559,187 - DZA65_RS07500 0.13 +0.5 1,559,206 + DZA65_RS07500 0.15 -0.2 1,559,207 - DZA65_RS07500 0.15 -0.6 1,559,207 - DZA65_RS07500 0.15 -0.3 1,559,207 - DZA65_RS07500 0.15 -0.3 1,559,207 - DZA65_RS07500 0.15 +0.8 1,559,254 + DZA65_RS07500 0.19 +0.4 1,559,258 + DZA65_RS07500 0.20 -0.5 1,559,285 + DZA65_RS07500 0.22 +0.8 1,559,286 - DZA65_RS07500 0.23 +0.1 1,559,286 - DZA65_RS07500 0.23 -1.0 1,559,334 - DZA65_RS07500 0.27 +0.1 1,559,424 + DZA65_RS07500 0.36 +1.6 1,559,456 - DZA65_RS07500 0.39 -0.6 1,559,456 - DZA65_RS07500 0.39 +0.4 1,559,529 + DZA65_RS07500 0.46 -0.2 1,559,529 + DZA65_RS07500 0.46 +0.4 1,559,569 - DZA65_RS07500 0.50 +0.1 1,559,785 - DZA65_RS07500 0.71 +0.4 1,559,803 - DZA65_RS07500 0.73 -0.1 1,559,815 - DZA65_RS07500 0.74 +1.5 1,559,815 - DZA65_RS07500 0.74 -0.2 1,559,846 + DZA65_RS07500 0.77 +0.7 1,559,847 - DZA65_RS07500 0.78 -0.1 1,559,847 - DZA65_RS07500 0.78 -0.5 1,559,847 - DZA65_RS07500 0.78 +1.2 1,559,847 - DZA65_RS07500 0.78 +0.9 1,559,847 - DZA65_RS07500 0.78 -0.3 1,559,896 + DZA65_RS07500 0.82 +2.6 1,559,921 - DZA65_RS07500 0.85 +1.3 1,559,941 - DZA65_RS07500 0.87 +0.6 1,559,941 - DZA65_RS07500 0.87 +0.0 1,559,944 + DZA65_RS07500 0.87 +0.4 1,559,944 + DZA65_RS07500 0.87 -1.2 1,559,944 + DZA65_RS07500 0.87 -0.6 1,559,944 + DZA65_RS07500 0.87 +0.4 1,559,945 - DZA65_RS07500 0.87 +0.4 1,560,003 + -0.9 1,560,004 - -0.9 1,560,004 - +0.4 1,560,007 - +1.0 1,560,025 - -2.6 1,560,041 - +0.7 1,560,073 + -1.0 1,560,074 - +0.2 1,560,074 - +1.7 1,560,077 - +0.5 1,560,096 + DZA65_RS07505 0.17 +0.4 1,560,108 + DZA65_RS07505 0.24 +0.3 1,560,109 - DZA65_RS07505 0.25 +1.0 1,560,109 - DZA65_RS07505 0.25 +1.5 1,560,118 - DZA65_RS07505 0.30 +0.8 1,560,128 + DZA65_RS07505 0.36 +0.0 1,560,128 + DZA65_RS07505 0.36 +0.4 1,560,128 + DZA65_RS07505 0.36 +1.7 1,560,129 - DZA65_RS07505 0.37 +0.4 1,560,129 - DZA65_RS07505 0.37 -0.1 1,560,129 - DZA65_RS07505 0.37 +1.0 1,560,151 + DZA65_RS07505 0.50 -0.4 1,560,152 - DZA65_RS07505 0.51 -0.1 1,560,177 - DZA65_RS07505 0.66 -0.2 1,560,244 + -0.5 1,560,244 + +0.4 1,560,245 - +0.4 1,560,275 - +0.0 1,560,279 + -1.2 1,560,279 + +0.4 1,560,280 - -0.7 1,560,280 - +1.4 1,560,280 - -1.2 1,560,296 + +0.4 1,560,301 - +0.2 1,560,301 - +0.2 1,560,319 + DZA65_RS07510 0.10 -0.5 1,560,322 - DZA65_RS07510 0.11 +1.8 1,560,322 - DZA65_RS07510 0.11 -0.2 1,560,322 - DZA65_RS07510 0.11 +0.1 1,560,388 + DZA65_RS07510 0.18 -0.5 1,560,388 + DZA65_RS07510 0.18 +0.6 1,560,388 + DZA65_RS07510 0.18 -0.3 1,560,389 - DZA65_RS07510 0.19 +0.2 1,560,389 - DZA65_RS07510 0.19 +1.7 1,560,453 - DZA65_RS07510 0.26 +0.0 1,560,495 + DZA65_RS07510 0.31 -0.5 1,560,496 - DZA65_RS07510 0.32 -0.3 1,560,501 - DZA65_RS07510 0.32 -1.0 1,560,504 - DZA65_RS07510 0.32 +1.5 1,560,519 + DZA65_RS07510 0.34 -1.4 1,560,524 + DZA65_RS07510 0.35 +1.1 1,560,525 - DZA65_RS07510 0.35 +0.6 1,560,659 + DZA65_RS07510 0.51 -0.4 1,560,669 + DZA65_RS07510 0.52 -0.0 1,560,672 + DZA65_RS07510 0.53 +0.2 1,560,672 + DZA65_RS07510 0.53 +0.4 1,560,673 - DZA65_RS07510 0.53 +0.0 1,560,719 + DZA65_RS07510 0.58 +1.0 1,560,720 - +0.4 1,560,720 - DZA65_RS07510 0.59 -0.4 1,560,756 + DZA65_RS07510 0.63 -0.6 1,560,757 - DZA65_RS07510 0.63 -0.6 1,560,760 - DZA65_RS07510 0.63 -0.2 1,560,808 - DZA65_RS07510 0.69 +0.4 1,560,966 + DZA65_RS07510 0.88 +0.2 1,560,988 + -0.2 1,560,988 + -2.1 1,560,988 + -0.5 1,560,989 - -0.5 1,560,989 - +2.0 1,560,989 - -0.3 1,560,989 - +0.4 1,561,032 + +1.5 1,561,032 + +0.2 1,561,036 + +2.2 1,561,039 + -0.9 1,561,039 + -0.9 1,561,040 - +1.3 1,561,075 + +0.2 1,561,075 + +0.6 1,561,136 - +0.0 1,561,136 - +0.0 1,561,137 + +1.2 1,561,142 + -0.7 1,561,193 + DZA65_RS07515 0.11 +0.0 1,561,193 + DZA65_RS07515 0.11 -0.4 1,561,193 + DZA65_RS07515 0.11 -0.3 1,561,194 - DZA65_RS07515 0.11 -0.1 1,561,194 - DZA65_RS07515 0.11 -1.2 1,561,197 + DZA65_RS07515 0.12 -0.1 1,561,197 + DZA65_RS07515 0.12 +0.1 1,561,197 + DZA65_RS07515 0.12 -0.4 1,561,197 + DZA65_RS07515 0.12 -0.8 1,561,198 - DZA65_RS07515 0.12 +0.3 1,561,198 - DZA65_RS07515 0.12 +0.9 1,561,229 - DZA65_RS07515 0.14 -0.3
Or see this region's nucleotide sequence