Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06920

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,435,465	+				+0.0
1,435,467	+				+0.3
1,435,467	+				+1.3
1,435,467	+				+0.2
1,435,467	+				+0.7
1,435,467	+				-0.0
1,435,467	+				+0.7
1,435,467	+				+0.1
1,435,467	+				-1.7
1,435,467	+				-0.3
1,435,467	+				+0.1
1,435,471	+				-1.9
1,435,471	+				-0.1
1,435,471	+				+0.2
1,435,471	+				+1.8
1,435,480	+				-0.9
1,435,484	+				-0.6
1,435,484	+				-0.4
1,435,484	+				+0.7
1,435,485	-				+0.4
1,435,485	-				-2.6
1,435,485	-				-1.9
1,435,489	+				-0.0
1,435,489	+				-0.2
1,435,494	+				-1.9
1,435,494	+				-0.1
1,435,494	+				-1.1
1,435,498	+				-0.6
1,435,498	+				+1.0
1,435,498	+				-0.3
1,436,011	+				-0.6
1,436,012	-				-3.2
1,436,012	-				-0.1
1,436,013	+				-0.8
1,436,013	+				-0.1
1,436,013	+				-1.7
1,436,013	+				-1.9
1,436,013	+				-2.2
1,436,014	-				-1.1
1,436,014	-				-1.8
1,436,014	-				-3.5
1,436,014	-				-0.7
1,436,016	+				-0.7
1,436,016	+				+1.0
1,436,016	+				-2.4
1,436,016	+				+0.7
1,436,016	+				-0.4
1,436,016	+				+0.3
1,436,016	+				-0.6
1,436,016	+				-1.1
1,436,016	+				+0.1
1,436,017	-				-0.1
1,436,017	-				-1.0
1,436,017	-				-0.6
1,436,017	-				-0.6
1,436,036	+				-0.4
1,436,036	+				-1.0
1,436,080	+				-1.1
1,436,168	+		DZA65_RS06920	0.17	+0.9
1,436,169	-		DZA65_RS06920	0.17	+0.9
1,436,169	-		DZA65_RS06920	0.17	+0.3
1,436,191	+		DZA65_RS06920	0.20	-0.4
1,436,192	-		DZA65_RS06920	0.20	-0.6
1,436,192	-		DZA65_RS06920	0.20	-0.4
1,436,192	-		DZA65_RS06920	0.20	+0.1
1,436,192	-		DZA65_RS06920	0.20	+0.4
1,436,192	-		DZA65_RS06920	0.20	+0.1
1,436,192	-		DZA65_RS06920	0.20	+0.0
1,436,192	-		DZA65_RS06920	0.20	-2.7
1,436,192	-		DZA65_RS06920	0.20	+0.8
1,436,310	+		DZA65_RS06920	0.34	-0.4
1,436,310	+				+0.4
1,436,310	+		DZA65_RS06920	0.34	-0.3
1,436,310	+		DZA65_RS06920	0.34	-0.9
1,436,310	+				+0.0
1,436,311	-		DZA65_RS06920	0.34	-1.6
1,436,311	-		DZA65_RS06920	0.34	-0.1
1,436,311	-		DZA65_RS06920	0.34	-1.6
1,436,311	-		DZA65_RS06920	0.34	-1.5
1,436,496	+		DZA65_RS06920	0.57	-1.1
1,436,496	+		DZA65_RS06920	0.57	-0.3
1,436,496	+		DZA65_RS06920	0.57	+0.4
1,436,496	+		DZA65_RS06920	0.57	+0.7
1,436,497	-		DZA65_RS06920	0.57	+0.3
1,436,535	+		DZA65_RS06920	0.61	-0.3
1,436,536	-		DZA65_RS06920	0.62	-0.4
1,436,536	-		DZA65_RS06920	0.62	-0.3
1,436,578	-		DZA65_RS06920	0.67	+0.2
1,436,592	+		DZA65_RS06920	0.68	-1.4
1,436,592	+		DZA65_RS06920	0.68	-2.1
1,436,593	-		DZA65_RS06920	0.68	+0.2
1,436,606	+		DZA65_RS06920	0.70	+0.4
1,436,606	+		DZA65_RS06920	0.70	-0.6
1,436,606	+		DZA65_RS06920	0.70	-2.1
1,436,606	+		DZA65_RS06920	0.70	-1.1
1,436,607	-		DZA65_RS06920	0.70	-2.3
1,436,607	-		DZA65_RS06920	0.70	-1.0
1,436,610	+		DZA65_RS06920	0.71	-1.9
1,436,610	+		DZA65_RS06920	0.71	-0.0
1,436,611	-		DZA65_RS06920	0.71	+2.4
1,436,611	-		DZA65_RS06920	0.71	-0.4
1,436,611	-		DZA65_RS06920	0.71	-0.9
1,436,611	-		DZA65_RS06920	0.71	-0.5
1,436,631	+		DZA65_RS06920	0.73	-0.3
1,436,632	-		DZA65_RS06920	0.73	-0.6
1,436,661	+		DZA65_RS06920	0.77	-0.1
1,436,662	-		DZA65_RS06920	0.77	+0.6
1,436,665	-		DZA65_RS06920	0.77	-0.8
1,436,665	-		DZA65_RS06920	0.77	-0.5
1,436,665	-		DZA65_RS06920	0.77	-0.4
1,436,778	+				-0.2
1,436,778	+				-0.4
1,436,788	+				-1.1
1,436,789	-				-1.9
1,436,791	+				-0.5
1,436,792	-				-1.4
1,436,799	+				-1.9
1,436,808	-				+0.4
1,436,839	+				+0.1
1,436,839	+				+1.0
1,436,839	+				-0.9
1,436,839	+				+0.4
1,436,840	-				-0.6
1,436,850	+				-1.1
1,436,850	+				-1.1
1,436,850	+				-0.0
1,436,850	+				-0.1
1,436,850	+				-0.8
1,436,851	-				+1.0
1,436,851	-				-0.2
1,436,860	-				-0.6
1,436,915	+				+1.4
1,436,915	+				+0.4
1,436,916	-				-1.7
1,436,916	-				-3.1
1,436,923	+				-0.4
1,436,943	+				+0.1
1,436,944	-				+0.7
1,436,944	-				+0.4
1,436,963	+				-2.0
1,436,966	+				-0.8
1,436,967	-				+1.0
1,436,967	-				+0.0
1,436,969	+				+0.3
1,436,969	+				-2.7
1,436,972	+				-2.6
1,436,972	+				+2.6
1,436,972	+				-0.2
1,436,972	+				+1.4
1,436,972	+				-0.2
1,436,973	-				-0.9
1,436,973	-				-2.4
1,436,973	-				-0.8
1,436,973	-				+0.1
1,436,973	-				+0.4
1,436,973	-				-0.1
1,436,973	-				+0.3
1,436,973	-				-1.9
1,436,974	+				-0.1
1,436,974	+				+0.2
1,437,116	+				+0.3
1,437,116	+				+1.0
1,437,116	+				-2.6
1,437,116	+				+0.4
1,437,116	+				+0.9
1,437,116	+				+0.3
1,437,116	+				+0.8
1,437,117	-				-0.4
1,437,117	-				+0.6
1,437,121	+				-0.8
1,437,121	+				-0.3
1,437,122	-				-0.4
1,437,122	-				-2.1
1,437,122	-				-0.7
1,437,122	-				+0.7
1,437,212	+				+0.4
1,437,212	+				+0.4
1,437,212	+				+0.0
1,437,213	-				+0.4
1,437,213	-				+1.3
1,437,216	+				+0.9
1,437,216	+				-1.4
1,437,217	-				+1.2
1,437,217	-				+1.6
1,437,217	-				-0.9
1,437,244	+				-1.1
1,437,244	+				-2.1
1,437,244	+				+0.3
1,437,244	+				+1.4
1,437,244	+				-0.0
1,437,244	+				+0.9
1,437,244	+				-0.3
1,437,245	-				+0.2
1,437,245	-				+0.0
1,437,245	-				+2.6
1,437,245	-				-0.9
1,437,380	+				-1.1
1,437,384	+				+1.0
1,437,384	+				-0.0
1,437,385	-				+0.7
1,437,393	+				+0.8
1,437,393	+				+1.4
1,437,394	-				+0.4
1,437,394	-				-2.1
1,437,394	-				+1.9
1,437,394	-				+1.6
1,437,394	-				+1.0
1,437,394	-				+1.5
1,437,394	-				+0.0
1,437,394	-				-0.1
1,437,412	+				-0.2
1,437,412	+				+1.1
1,437,412	+				+0.9
1,437,413	-				+2.4
1,437,421	+				-1.4
1,437,422	-				+1.6
1,437,424	+				-1.2
1,437,424	+				+0.1
1,437,425	-				-0.1
1,437,425	-				+0.3
1,437,425	-				+0.0
1,437,425	-				-1.1
1,437,425	-				+0.9
1,437,425	-				+0.9
1,437,498	-				+0.8
1,437,506	+				+1.0
1,437,507	-				+0.4
1,437,517	+				-0.9
1,437,517	+				-1.1
1,437,518	-				-1.6
1,437,518	-				-1.1
1,437,518	-				+0.8
1,437,518	-				+1.4
1,437,519	+				+0.2
1,437,519	+				+0.8
1,437,519	+				+0.9
1,437,519	+				+0.5
1,437,519	+				+0.7
1,437,520	-				-0.4
1,437,520	-				+0.4
1,437,534	+				-0.4
1,437,544	+				-1.9
1,437,567	+				-2.6
1,437,567	+				-0.3
1,437,567	+				+0.3
1,437,567	+				-0.6
1,437,568	-				-0.4
1,437,568	-				-0.1
1,437,569	+				+0.7
1,437,569	+				-0.7
1,437,569	+				+0.0
1,437,569	+				+0.0
1,437,569	+				-0.6
1,437,569	+				-1.9
1,437,570	-				-0.5
1,437,570	-				-1.4
1,437,570	-				+0.3
1,437,570	-				+1.0
1,437,570	-				-1.9
1,437,570	-				+0.1
1,437,570	-				+0.7
1,437,570	-				+0.7
1,437,570	-				+0.6
1,437,572	+				-0.9
1,437,573	-				-1.8
1,437,573	-				-1.0
1,437,600	+				-0.6
1,437,638	-				+0.4
1,437,644	+				+0.6
1,437,644	+				-0.9
1,437,644	+				+0.0
1,437,644	+				-0.1
1,437,644	+				-0.1
1,437,645	-				+0.4
1,437,645	-				-0.6
1,437,645	-				+0.1
1,437,667	-				+0.8
1,437,722	+				+0.8
1,437,723	+				-1.6
1,437,724	-		DZA65_RS06940	0.10	-0.6
1,437,724	-		DZA65_RS06940	0.10	+0.9
1,437,735	+		DZA65_RS06940	0.12	+1.2
1,437,736	-		DZA65_RS06940	0.12	-2.4
1,437,749	+		DZA65_RS06940	0.14	+2.0
1,437,749	+		DZA65_RS06940	0.14	-0.3
1,437,766	-		DZA65_RS06940	0.16	+0.7
1,437,780	+		DZA65_RS06940	0.18	+0.4
1,437,781	-		DZA65_RS06940	0.18	-0.4
1,437,801	-		DZA65_RS06940	0.21	+0.3
1,437,801	-		DZA65_RS06940	0.21	+0.8
1,437,837	+		DZA65_RS06940	0.26	-0.1
1,437,837	+		DZA65_RS06940	0.26	-1.1