Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06545

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,359,268	+				-0.1
1,359,268	+				+0.5
1,359,271	+				-0.5
1,359,271	+				-1.3
1,359,271	+				-1.2
1,359,271	+				-1.1
1,359,271	+				+0.9
1,359,271	+				+0.3
1,359,272	-				+1.5
1,359,272	-				+0.1
1,359,272	-				-1.8
1,359,286	+				+2.1
1,359,286	+				-0.8
1,359,287	-				+1.1
1,359,287	-				-1.5
1,359,287	-				+0.1
1,359,287	-				-0.3
1,359,287	-				-0.5
1,359,287	-				-1.7
1,359,287	-				-1.5
1,359,287	-				+0.6
1,359,289	+				+0.0
1,359,289	+				+0.1
1,359,290	-				-0.8
1,359,290	-				-1.0
1,359,290	-				-0.1
1,359,290	-				-1.5
1,359,290	-				-1.1
1,359,304	+				-0.5
1,359,305	-				+0.4
1,359,305	-				-0.5
1,359,315	+				+0.5
1,359,316	-				-2.1
1,359,316	-				-2.5
1,359,366	-				+0.5
1,359,366	-				+1.0
1,359,381	+				+0.4
1,359,417	+				-0.7
1,359,448	+				+0.0
1,359,449	-				-0.3
1,359,449	-				+0.2
1,359,733	-				-0.1
1,359,733	-				+1.8
1,359,733	-				-2.1
1,359,736	-				-0.9
1,359,744	-				-0.4
1,359,744	-				-0.5
1,359,768	+				-1.5
1,359,769	-				+0.1
1,359,769	-				+0.3
1,359,769	-				-1.1
1,359,769	-				+1.7
1,359,773	-				-0.4
1,359,773	-				+0.5
1,359,773	-				-0.2
1,359,800	+				+0.1
1,359,800	+				+0.2
1,359,801	-				-0.1
1,359,801	-				+0.6
1,359,813	+				+0.1
1,359,814	-				-0.1
1,359,814	-				+0.8
1,359,814	-				+0.2
1,359,814	-				-0.1
1,359,820	+				-0.4
1,359,821	-				-1.3
1,359,821	-				+1.1
1,359,821	-				+0.4
1,359,877	+				+0.1
1,359,877	+				-0.9
1,359,878	-				-2.5
1,359,878	-				-1.8
1,359,899	+				-0.3
1,360,011	+		DZA65_RS06545	0.14	-0.6
1,360,011	+		DZA65_RS06545	0.14	-0.1
1,360,011	+		DZA65_RS06545	0.14	-1.6
1,360,012	-		DZA65_RS06545	0.14	-1.6
1,360,012	-		DZA65_RS06545	0.14	-0.4
1,360,033	+		DZA65_RS06545	0.16	+0.1
1,360,033	+		DZA65_RS06545	0.16	+0.8
1,360,033	+		DZA65_RS06545	0.16	-0.5
1,360,033	+		DZA65_RS06545	0.16	-0.8
1,360,033	+		DZA65_RS06545	0.16	+2.1
1,360,033	+		DZA65_RS06545	0.16	-1.4
1,360,033	+		DZA65_RS06545	0.16	-0.3
1,360,034	-		DZA65_RS06545	0.16	-0.9
1,360,034	-		DZA65_RS06545	0.16	-0.8
1,360,034	-		DZA65_RS06545	0.16	+1.5
1,360,034	-		DZA65_RS06545	0.16	-0.6
1,360,034	-		DZA65_RS06545	0.16	-2.2
1,360,034	-		DZA65_RS06545	0.16	-0.5
1,360,034	-		DZA65_RS06545	0.16	-1.8
1,360,034	-		DZA65_RS06545	0.16	+1.2
1,360,034	-		DZA65_RS06545	0.16	-0.1
1,360,034	-		DZA65_RS06545	0.16	-0.2
1,360,078	+		DZA65_RS06545	0.19	-0.2
1,360,078	+		DZA65_RS06545	0.19	-0.2
1,360,078	+		DZA65_RS06545	0.19	+0.5
1,360,078	+		DZA65_RS06545	0.19	-0.3
1,360,078	+				-0.5
1,360,078	+		DZA65_RS06545	0.19	-0.7
1,360,078	+		DZA65_RS06545	0.19	-1.8
1,360,078	+		DZA65_RS06545	0.19	+1.2
1,360,078	+		DZA65_RS06545	0.19	-1.8
1,360,079	-		DZA65_RS06545	0.19	+0.5
1,360,079	-		DZA65_RS06545	0.19	+0.1
1,360,079	-		DZA65_RS06545	0.19	+0.0
1,360,079	-		DZA65_RS06545	0.19	-0.9
1,360,079	-		DZA65_RS06545	0.19	+0.9
1,360,079	-		DZA65_RS06545	0.19	+1.2
1,360,079	-		DZA65_RS06545	0.19	-0.5
1,360,079	-		DZA65_RS06545	0.19	-1.1
1,360,079	-		DZA65_RS06545	0.19	-0.6
1,360,304	-		DZA65_RS06545	0.38	-0.0
1,360,418	+		DZA65_RS06545	0.47	-1.2
1,360,418	+		DZA65_RS06545	0.47	-1.8
1,360,420	+		DZA65_RS06545	0.48	-0.5
1,360,420	+		DZA65_RS06545	0.48	+0.5
1,360,420	+		DZA65_RS06545	0.48	-1.1
1,360,420	+		DZA65_RS06545	0.48	+0.2
1,360,421	-		DZA65_RS06545	0.48	-1.1
1,360,421	-		DZA65_RS06545	0.48	-0.8
1,360,421	-		DZA65_RS06545	0.48	-1.2
1,360,421	-		DZA65_RS06545	0.48	+0.7
1,360,430	-		DZA65_RS06545	0.48	-2.3
1,360,430	-		DZA65_RS06545	0.48	-0.5
1,360,492	+		DZA65_RS06545	0.54	+0.4
1,360,492	+				+0.5
1,360,493	-		DZA65_RS06545	0.54	+0.1
1,360,493	-		DZA65_RS06545	0.54	+0.5
1,360,493	-		DZA65_RS06545	0.54	-1.3
1,360,493	-		DZA65_RS06545	0.54	+0.2
1,360,493	-		DZA65_RS06545	0.54	-0.1
1,360,543	-		DZA65_RS06545	0.58	-0.9
1,360,557	-		DZA65_RS06545	0.59	+0.2
1,360,561	+		DZA65_RS06545	0.59	+0.1
1,360,562	-		DZA65_RS06545	0.59	-1.1
1,360,649	+		DZA65_RS06545	0.67	+1.8
1,360,658	+		DZA65_RS06545	0.67	-0.6
1,360,659	-		DZA65_RS06545	0.67	-1.5
1,360,659	-		DZA65_RS06545	0.67	+0.5
1,360,667	+		DZA65_RS06545	0.68	+0.3
1,360,667	+		DZA65_RS06545	0.68	+0.9
1,360,667	+		DZA65_RS06545	0.68	-2.7
1,360,667	+		DZA65_RS06545	0.68	-2.1
1,360,667	+		DZA65_RS06545	0.68	+0.5
1,360,668	-		DZA65_RS06545	0.68	-2.5
1,360,668	-		DZA65_RS06545	0.68	-0.5
1,360,668	-		DZA65_RS06545	0.68	+1.8
1,360,668	-		DZA65_RS06545	0.68	-0.2
1,360,668	-		DZA65_RS06545	0.68	-0.5
1,360,668	-		DZA65_RS06545	0.68	-1.1
1,360,668	-		DZA65_RS06545	0.68	-0.0
1,360,668	-		DZA65_RS06545	0.68	-2.1
1,360,668	-		DZA65_RS06545	0.68	-0.5
1,360,668	-		DZA65_RS06545	0.68	-0.1
1,360,668	-		DZA65_RS06545	0.68	+0.5
1,360,668	-		DZA65_RS06545	0.68	+0.5
1,360,668	-		DZA65_RS06545	0.68	+0.8
1,360,669	+		DZA65_RS06545	0.68	-1.3
1,360,669	+		DZA65_RS06545	0.68	+0.6
1,360,669	+		DZA65_RS06545	0.68	+0.0
1,360,669	+		DZA65_RS06545	0.68	-0.4
1,360,669	+		DZA65_RS06545	0.68	-1.9
1,360,669	+		DZA65_RS06545	0.68	-0.7
1,360,669	+		DZA65_RS06545	0.68	+1.3
1,360,670	-		DZA65_RS06545	0.68	+0.0
1,360,670	-		DZA65_RS06545	0.68	+0.2
1,360,670	-		DZA65_RS06545	0.68	-0.7
1,360,670	-		DZA65_RS06545	0.68	-1.1
1,360,670	-		DZA65_RS06545	0.68	+1.3
1,360,694	+		DZA65_RS06545	0.70	-0.2
1,360,751	+		DZA65_RS06545	0.75	-0.3
1,360,751	+		DZA65_RS06545	0.75	+1.5
1,360,751	+		DZA65_RS06545	0.75	+0.5
1,360,752	-		DZA65_RS06545	0.75	-1.1
1,360,813	+		DZA65_RS06545	0.80	+0.2
1,360,813	+		DZA65_RS06545	0.80	+0.8
1,360,813	+		DZA65_RS06545	0.80	-1.6
1,360,813	+		DZA65_RS06545	0.80	-1.5
1,360,813	+		DZA65_RS06545	0.80	+1.4
1,360,813	+		DZA65_RS06545	0.80	+0.5
1,360,814	-		DZA65_RS06545	0.80	-1.8
1,360,814	-		DZA65_RS06545	0.80	-0.3
1,360,814	-		DZA65_RS06545	0.80	-1.0
1,360,814	-		DZA65_RS06545	0.80	-1.3
1,360,814	-		DZA65_RS06545	0.80	+1.5
1,360,814	-		DZA65_RS06545	0.80	-1.5
1,360,814	-		DZA65_RS06545	0.80	-0.7
1,360,814	-		DZA65_RS06545	0.80	-1.1
1,360,814	-		DZA65_RS06545	0.80	-0.3
1,360,879	-		DZA65_RS06545	0.85	-0.8
1,360,894	+		DZA65_RS06545	0.87	-0.6
1,360,894	+		DZA65_RS06545	0.87	-1.1
1,360,894	+				-1.8
1,360,895	-		DZA65_RS06545	0.87	+2.5
1,360,895	-		DZA65_RS06545	0.87	-1.6
1,360,895	-		DZA65_RS06545	0.87	+0.2
1,360,896	-		DZA65_RS06545	0.87	-2.1
1,360,909	+		DZA65_RS06545	0.88	-0.3
1,360,909	+		DZA65_RS06545	0.88	-1.5
1,360,909	+		DZA65_RS06545	0.88	-0.6
1,360,909	+		DZA65_RS06545	0.88	-1.5
1,360,910	-		DZA65_RS06545	0.88	-2.5
1,360,910	-		DZA65_RS06545	0.88	+0.6
1,360,910	-		DZA65_RS06545	0.88	-0.4
1,360,910	-		DZA65_RS06545	0.88	+1.1
1,360,910	-		DZA65_RS06545	0.88	-0.1
1,360,910	-		DZA65_RS06545	0.88	-1.3
1,360,958	+				+0.0
1,360,958	+				+0.5
1,360,958	+				-0.7
1,360,958	+				-0.1
1,360,958	+				-0.3
1,360,958	+				+0.2
1,360,958	+				-1.9
1,360,958	+				-0.1
1,360,959	-				+0.1
1,360,959	-				-2.5
1,361,018	+				-0.7
1,361,018	+				-0.8
1,361,018	+				+0.5
1,361,018	+				-1.1
1,361,019	-				-0.3
1,361,019	-				-2.1
1,361,019	-				-0.3
1,361,019	-				+0.3
1,361,019	-				-0.1
1,361,028	-				-0.5
1,361,028	-				-0.9
1,361,028	-				-0.2
1,361,043	+				+0.1
1,361,044	-				+1.0
1,361,079	+				-2.1
1,361,079	+				-1.8
1,361,080	-				+0.1
1,361,081	+				-1.8
1,361,081	+				+0.3
1,361,081	+				+0.7
1,361,081	+				-1.4
1,361,081	+				+0.5
1,361,081	+				-1.8
1,361,081	+				-0.1
1,361,082	-				-0.3
1,361,082	-				-0.1
1,361,082	-				+0.2
1,361,082	-				-0.1
1,361,082	-				+0.6
1,361,082	-				-0.1
1,361,082	-				-0.6
1,361,082	-				+0.5
1,361,103	+				-0.1
1,361,103	+				-1.3
1,361,103	+				+0.5
1,361,103	+				+1.2
1,361,104	-				-1.5
1,361,104	-				-1.2
1,361,104	-				+1.2
1,361,105	+				-2.3
1,361,105	+				+0.5
1,361,105	+				-1.1
1,361,105	+				+0.4
1,361,105	+				+2.1
1,361,105	+				+1.0
1,361,105	+				-0.7
1,361,106	-				-0.1
1,361,106	-				+0.1
1,361,137	+				+0.5
1,361,137	+				-0.3
1,361,137	+				-1.3
1,361,137	+				-0.8
1,361,137	+				+1.5
1,361,137	+				+0.7
1,361,137	+				-0.3
1,361,137	+				-0.4
1,361,137	+				-1.0
1,361,137	+				-1.4
1,361,137	+				-2.0
1,361,137	+				-1.5
1,361,138	-				+1.0
1,361,138	-				-2.1
1,361,138	-				-0.3
1,361,177	+				+1.2
1,361,186	+				-1.2
1,361,192	+				-0.3
1,361,192	+				-2.1
1,361,230	+				-0.1
1,361,230	+				+0.8
1,361,230	+				+0.5
1,361,230	+				+0.1
1,361,230	+				-0.5
1,361,230	+				+0.5
1,361,230	+				-0.1
1,361,230	+				+0.4
1,361,231	-				+0.4
1,361,231	-				-0.7
1,361,231	-				-2.1
1,361,231	-				+0.1
1,361,231	-				+1.0
1,361,231	-				+1.5
1,361,231	-				+0.0
1,361,260	+				-0.3
1,361,260	+				-0.9
1,361,261	-				-0.2
1,361,349	+				-1.9
1,361,351	+		DZA65_RS06550	0.10	+0.1
1,361,351	+		DZA65_RS06550	0.10	-0.6
1,361,351	+		DZA65_RS06550	0.10	-3.0
1,361,351	+		DZA65_RS06550	0.10	-0.2
1,361,351	+		DZA65_RS06550	0.10	-0.5
1,361,352	-		DZA65_RS06550	0.10	-2.1
1,361,352	-		DZA65_RS06550	0.10	+0.4
1,361,352	-		DZA65_RS06550	0.10	+1.2
1,361,374	+		DZA65_RS06550	0.12	+0.2
1,361,374	+		DZA65_RS06550	0.12	+2.3
1,361,546	-		DZA65_RS06550	0.27	+0.0
1,361,704	+		DZA65_RS06550	0.40	-0.5
1,361,705	-		DZA65_RS06550	0.40	-0.5
1,361,758	+		DZA65_RS06550	0.45	+0.1
1,361,759	-		DZA65_RS06550	0.45	-0.5
1,361,805	-		DZA65_RS06550	0.49	+0.2
1,361,920	+		DZA65_RS06550	0.59	+2.2
1,361,921	-		DZA65_RS06550	0.59	-0.3
1,361,921	-		DZA65_RS06550	0.59	-0.8
1,361,921	-		DZA65_RS06550	0.59	-1.2
1,361,921	-		DZA65_RS06550	0.59	+0.1
1,361,921	-		DZA65_RS06550	0.59	+0.5
1,361,935	+		DZA65_RS06550	0.60	+0.2
1,361,935	+		DZA65_RS06550	0.60	-1.1
1,361,936	-		DZA65_RS06550	0.60	+1.8
1,361,936	-		DZA65_RS06550	0.60	-2.1
1,361,983	+		DZA65_RS06550	0.64	-0.7
1,361,983	+		DZA65_RS06550	0.64	+0.8
1,361,983	+		DZA65_RS06550	0.64	+0.5
1,361,983	+		DZA65_RS06550	0.64	+0.8
1,361,983	+		DZA65_RS06550	0.64	+0.5
1,361,983	+		DZA65_RS06550	0.64	-1.1
1,361,983	+		DZA65_RS06550	0.64	+0.2
1,361,983	+		DZA65_RS06550	0.64	-0.1
1,361,983	+		DZA65_RS06550	0.64	+0.5
1,361,984	-		DZA65_RS06550	0.64	-1.2
1,361,984	-				+1.7
1,361,984	-		DZA65_RS06550	0.64	-0.5
1,361,984	-		DZA65_RS06550	0.64	+0.1
1,361,984	-				-0.1
1,361,984	-		DZA65_RS06550	0.64	-0.3
1,361,986	-		DZA65_RS06550	0.65	-0.7
1,361,986	-		DZA65_RS06550	0.65	+1.1
1,362,051	+		DZA65_RS06550	0.70	-0.4
1,362,051	+		DZA65_RS06550	0.70	-0.1
1,362,051	+		DZA65_RS06550	0.70	-1.0
1,362,051	+		DZA65_RS06550	0.70	+0.2
1,362,051	+		DZA65_RS06550	0.70	+0.6
1,362,051	+		DZA65_RS06550	0.70	+1.0
1,362,051	+		DZA65_RS06550	0.70	+0.1
1,362,051	+		DZA65_RS06550	0.70	-1.8
1,362,051	+		DZA65_RS06550	0.70	+0.5
1,362,051	+		DZA65_RS06550	0.70	-0.7
1,362,051	+		DZA65_RS06550	0.70	+0.2
1,362,052	-		DZA65_RS06550	0.70	-0.5
1,362,052	-		DZA65_RS06550	0.70	+0.3
1,362,052	-		DZA65_RS06550	0.70	+0.8
1,362,052	-				+0.1
1,362,052	-		DZA65_RS06550	0.70	-0.2
1,362,052	-		DZA65_RS06550	0.70	+0.5
1,362,052	-		DZA65_RS06550	0.70	-1.1